BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00010405
         (1751 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...    72   4e-10
gb|AAS55787.1| hypothetical protein [Oryza sativa Japonica Group...    71   1e-09
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    68   9e-09
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta...    68   9e-09
dbj|BAB08714.1| non-LTR retroelement reverse transcriptase-like ...    68   9e-09

>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1374

 Score = 72.4 bits (176), Expect = 4e-10
 Identities = 38/113 (33%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
 Frame = -1

Query: 335 MISWNCRGMGSKETVLNLRSLVKQFNPNVLFLVETK-----LMYVKKSFKYPQVFAVDPV 171
           ++SWNC+G+G+  TV +LR +   + P V+FL ETK     L  V     +  +  V+P+
Sbjct: 3   ILSWNCQGVGNTPTVRHLREIRGLYFPEVIFLCETKKRRNYLENVVGHLGFFDLHTVEPI 62

Query: 170 GQSGGIAVLYKDNISFQVIDGCKHAISGTFINYLTNVSWHVSFIYGEPIAHKR 12
           G+SGG+A+++KD++  +V+   K  I    I    +  ++++ IYGEP+  +R
Sbjct: 63  GKSGGLALMWKDSVQIKVLQSDKRLIDALLI--WQDKEFYLTCIYGEPVQAER 113


>gb|AAS55787.1| hypothetical protein [Oryza sativa Japonica Group]
           gi|54291856|gb|AAV32224.1| hypothetical protein [Oryza
           sativa Japonica Group]
          Length = 1936

 Score = 70.9 bits (172), Expect = 1e-09
 Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
 Frame = -1

Query: 344 GAMM-ISWNCRGMGSKETVLNLRSLVKQFNPNVLFLVET-----KLMYVKKSFKYPQVFA 183
           GAM  ++WNCRG+G+  TV +LR+L+++    ++FL ET     K+  +++   +     
Sbjct: 634 GAMSCLAWNCRGLGNTATVQDLRALIQKAGSQLVFLCETRQSVEKMSRLRRKLAFRGFVG 693

Query: 182 VDPVGQSGGIAVLYKDNISFQVIDGCKHAISGTFINYLTNVSWHVSFIYGEPIAHKR 12
           V   G+SGG+A+ + +++S  V D  K  I            WH++F+YGEP    R
Sbjct: 694 VSSEGKSGGLALYWDESVSVDVKDINKRYIDAYVRLSPDEPQWHITFVYGEPRVENR 750


>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
           (fragment)
          Length = 1365

 Score = 67.8 bits (164), Expect = 9e-09
 Identities = 37/113 (32%), Positives = 64/113 (56%), Gaps = 5/113 (4%)
 Frame = -1

Query: 335 MISWNCRGMGSKETVLNLRSLVKQFNPNVLFLVETKLM--YVKKSF---KYPQVFAVDPV 171
           +ISWNC+G+ +  T+  L+ + K   P++LFL+ETK    +V K F    Y  +  V+P 
Sbjct: 2   VISWNCQGLRNPWTIRYLKEMKKDHFPDILFLMETKNSQDFVYKVFCWLGYDFIHTVEPE 61

Query: 170 GQSGGIAVLYKDNISFQVIDGCKHAISGTFINYLTNVSWHVSFIYGEPIAHKR 12
           G+SGG+A+ +K ++  + +   K+ +     +   N  W +S +YG P+ H R
Sbjct: 62  GRSGGLAIFWKSHLEIEFLYADKNLMDLQVSS--RNKVWFISCVYGLPVTHMR 112


>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1225

 Score = 67.8 bits (164), Expect = 9e-09
 Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
 Frame = -1

Query: 335 MISWNCRGMGSKETVLNLRSLVKQFNPNVLFLVETK-----LMYVKKSFKYPQVFAVDPV 171
           +ISWNC+G+G K T   L  + + ++P  LFL ETK     L  V+ S  +  +  V+P+
Sbjct: 3   LISWNCQGVGPKTTSRRLEEMCRMYSPGFLFLSETKNDLVYLQNVQVSLGFDCLKTVEPI 62

Query: 170 GQSGGIAVLYKDNISFQVIDGCKHAISGTFINYLTNVSWHVSFIYGEPIAHKRRAV 3
           G SGG+A+ Y  +   + I  C   I    I  +      ++F+YG+P+   R  V
Sbjct: 63  GNSGGLALFYSRDYPVKFIYVCDRLIDIETI--IDGNRVFITFVYGDPVVQYRELV 116


>dbj|BAB08714.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 1197

 Score = 67.8 bits (164), Expect = 9e-09
 Identities = 37/115 (32%), Positives = 67/115 (58%), Gaps = 6/115 (5%)
 Frame = -1

Query: 332 ISWNCRGMGSKETVLNLRSLVKQFNPNVLFLVET----KLMYVKKSF-KYPQVFAVDPVG 168
           +SWNC+G+G+ +TV  +R ++K+ +P+V+FL+ET    +++  K  F K    F V P G
Sbjct: 1   MSWNCQGIGNPKTVRRVREILKKLSPDVIFLMETMNQDEVVLKKLDFLKRYNHFLVSPSG 60

Query: 167 Q-SGGIAVLYKDNISFQVIDGCKHAISGTFINYLTNVSWHVSFIYGEPIAHKRRA 6
           Q  GG+A+ +K ++   ++  C + I          +S+  +++YGEP   K+ A
Sbjct: 61  QGKGGLALFWKHDVEMAIVSSCDNFIDARV--SFKRISFLATYVYGEPEQSKKGA 113