BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00010396
         (2239 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003542763.1| PREDICTED: RNA polymerase II C-terminal doma...   363   1e-97
ref|XP_003529311.1| PREDICTED: RNA polymerase II C-terminal doma...   362   2e-97
ref|XP_002305017.1| predicted protein [Populus trichocarpa] gi|2...   358   3e-96
ref|XP_003545893.1| PREDICTED: RNA polymerase II C-terminal doma...   355   4e-95
ref|XP_002519032.1| double-stranded RNA binding protein, putativ...   354   5e-95

>ref|XP_003542763.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
            1-like [Glycine max]
          Length = 960

 Score =  363 bits (932), Expect = 1e-97
 Identities = 204/426 (47%), Positives = 270/426 (63%), Gaps = 24/426 (5%)
 Frame = +3

Query: 3    REEGEVPESELDPDTRRRLLILQHGQDNRDQILSEPPFPTRPTPQVSVPPLQVPIPPTVN 182
            REEGEVPESELDPDTRRRLLILQHGQD RD   +EPPFP R   Q S P  +VP     +
Sbjct: 535  REEGEVPESELDPDTRRRLLILQHGQDTRDHASAEPPFPVRHPVQASAP--RVP-----S 587

Query: 183  PRGGWPSLEEKGGSRQLNQALPKPVQKELPLESEPKHFDKHRARHPPFFRPVESPVSSDR 362
             RG W  +EE+ GS+ LN+ +PK    E P++S P   +K R  HP FF  VES +SSDR
Sbjct: 588  SRGVWFPVEEEIGSQPLNRVVPK----EFPVDSGPLGIEKPRLHHPSFFNKVESSISSDR 643

Query: 363  YLYEN-QRLA---HRKDDRLRPNHSFPKHRSFSGEDIPLDPPLSNN-------------G 491
             L+++ QRL    + +DDR R NH    +RSFSG+DIP     S++              
Sbjct: 644  ILHDSHQRLPKEMYHRDDRPRLNHMLSSYRSFSGDDIPFSRSSSSHRDLDSESGHSVLHA 703

Query: 492  EHPAGVLQNIARKCRTMVEFKPALVSSTELQFSVEVWFTGEKIGEGIGKTRREAQFQAAD 671
            + P  VL  IA KC T V+F  +LV+STEL+FS+E WF+G+KIG G G+TR+EAQ +AA 
Sbjct: 704  DTPVAVLHEIALKCGTKVDFMSSLVASTELKFSLEAWFSGKKIGHGFGRTRKEAQNKAAK 763

Query: 672  HALRNLANKYLSNVLPDPISAYGDLNMLPNMKENGFLGDTKSSGYHTPIKEDLVQIFKPE 851
             ++ +LA+ YLS+   +P S YGD++  PN+ +NG++G   S G     KED        
Sbjct: 764  DSIEHLADIYLSSAKDEPGSTYGDVSGFPNVNDNGYMGIASSLGNQPLSKEDSASFSSAS 823

Query: 852  SSRFSDPRPEGSKRLTSSVSALKELCTVEGLSLVF-------QDHSVLEEEFHAQVEIGG 1010
             SR  DPR + SKR   S+SALKELC +EGL + F         +SV ++E HAQVEI G
Sbjct: 824  PSRALDPRLDVSKRSMGSISALKELCMMEGLGVNFLSTPAPVSTNSVQKDEVHAQVEIDG 883

Query: 1011 RVLGKGVGLTWDEAKMLASEEALGSLKAMIAQGAQNHAESPRSLDVLSSKRQKLDFPQVL 1190
            ++ GKG+GLTWDEAKM A+E+ALG+L++ + Q  Q    SPR     S+KR K ++P+ +
Sbjct: 884  KIFGKGIGLTWDEAKMQAAEKALGNLRSKLGQSIQKMQSSPRPHQGFSNKRLKQEYPRTM 943

Query: 1191 QRIPSS 1208
            QR+PSS
Sbjct: 944  QRMPSS 949


>ref|XP_003529311.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
            1-like [Glycine max]
          Length = 954

 Score =  362 bits (930), Expect = 2e-97
 Identities = 203/426 (47%), Positives = 269/426 (63%), Gaps = 24/426 (5%)
 Frame = +3

Query: 3    REEGEVPESELDPDTRRRLLILQHGQDNRDQILSEPPFPTRPTPQVSVPPLQVPIPPTVN 182
            REEGEVPESELDPDTRRRLLILQHGQD RD   +EPPFP R        P+Q   P   +
Sbjct: 529  REEGEVPESELDPDTRRRLLILQHGQDTRDHASAEPPFPVRH-------PVQTSAPHVPS 581

Query: 183  PRGGWPSLEEKGGSRQLNQALPKPVQKELPLESEPKHFDKHRARHPPFFRPVESPVSSDR 362
             RG W   EE+ GS+ LN+ +PK    E P++S P    K R  HP FF  VES +SSDR
Sbjct: 582  SRGVWFPAEEEIGSQPLNRVVPK----EFPVDSGPLGIAKPRPHHPSFFSKVESSISSDR 637

Query: 363  YLYEN-QRLA---HRKDDRLRPNHSFPKHRSFSGEDIPLDPPLSNN-------------G 491
             L+++ QRL    + +DDR R NH    +RSFSG+DIP     S++              
Sbjct: 638  ILHDSHQRLPKEMYHRDDRPRLNHMLSSYRSFSGDDIPFSRSFSSHRDLDSESGHSVLHA 697

Query: 492  EHPAGVLQNIARKCRTMVEFKPALVSSTELQFSVEVWFTGEKIGEGIGKTRREAQFQAAD 671
            + P  VLQ IA KC T V+F  +LV+STELQFS+E WF+G+KIG  +G+TR+EAQ +AA+
Sbjct: 698  DTPVAVLQEIALKCGTKVDFISSLVASTELQFSMEAWFSGKKIGHRVGRTRKEAQNKAAE 757

Query: 672  HALRNLANKYLSNVLPDPISAYGDLNMLPNMKENGFLGDTKSSGYHTPIKEDLVQIFKPE 851
             ++++LA+ YLS+   +P S YGD++  PN+ ++G++G   S G     KED        
Sbjct: 758  DSIKHLADIYLSSAKDEPGSTYGDVSGFPNVNDSGYMGIASSLGNQPLSKEDSASFSTAS 817

Query: 852  SSRFSDPRPEGSKRLTSSVSALKELCTVEGLSLVF-------QDHSVLEEEFHAQVEIGG 1010
             SR  DPR + SKR   S+S+LKELC +EGL + F         +SV ++E HAQVEI G
Sbjct: 818  PSRVLDPRLDVSKRSMGSISSLKELCMMEGLDVNFLSAPAPVSTNSVQKDEVHAQVEIDG 877

Query: 1011 RVLGKGVGLTWDEAKMLASEEALGSLKAMIAQGAQNHAESPRSLDVLSSKRQKLDFPQVL 1190
            +V GKG+GLTWDEAKM A+E+ALGSL++ + Q  Q    SPR     S+KR K ++P+ +
Sbjct: 878  KVFGKGIGLTWDEAKMQAAEKALGSLRSKLGQSIQKRQSSPRPHQGFSNKRLKQEYPRPM 937

Query: 1191 QRIPSS 1208
            QR+PSS
Sbjct: 938  QRMPSS 943


>ref|XP_002305017.1| predicted protein [Populus trichocarpa] gi|222847981|gb|EEE85528.1|
            predicted protein [Populus trichocarpa]
          Length = 967

 Score =  358 bits (920), Expect = 3e-96
 Identities = 209/426 (49%), Positives = 263/426 (61%), Gaps = 24/426 (5%)
 Frame = +3

Query: 3    REEGEVPESELDPDTRRRLLILQHGQDNRDQILSEPPFPTRPTPQVSVPPLQVPIPPTVN 182
            REEGEVPESELDPDTRRRLLILQHG D+RD   SE PFP RP+ QVS P +Q        
Sbjct: 555  REEGEVPESELDPDTRRRLLILQHGHDSRDNAPSESPFPARPSTQVSAPRVQSV------ 608

Query: 183  PRGGWPSLEEKGGSRQLNQALPKPVQKELPLESEPKHFDKHRARHPPFFRPVESPVSSDR 362
              G W  +EE+   RQLN+       +E PL+S+P + +KHR  HP FF  VES + SDR
Sbjct: 609  --GSWVPVEEEMSPRQLNRT-----PREFPLDSDPMNIEKHRTHHPSFFHKVESNIPSDR 661

Query: 363  YLYENQRL---AHRKDDRLRPNHSFPKHRSFSGEDIPLDPPLSNNG------------EH 497
             ++ENQR    A  +DDR++ NHS   + SF GE  PL    SN              E 
Sbjct: 662  MIHENQRQPKEATYRDDRMKLNHSTSNYPSFQGE-CPLSRSSSNRDLDLESERAFSSTET 720

Query: 498  PAGVLQNIARKCRTMVEFKPALVSSTELQFSVEVWFTGEKIGEGIGKTRREAQFQAADHA 677
            P  VLQ IA KC T VEF+PAL+++++LQFS+E WF GEK+GEG GKTRREAQ QAA+ +
Sbjct: 721  PVEVLQEIAMKCGTKVEFRPALIATSDLQFSIETWFVGEKVGEGTGKTRREAQRQAAEGS 780

Query: 678  LRNLANKYLSNVLPDPISAYGDLNML--PNMKENGFLGDTKSSGYHTPIK-EDLVQIFKP 848
            ++ LA K           +Y D++    P+  +NGFLGD  S G    +K E++      
Sbjct: 781  IKKLAGKI----------SYHDISYYSYPSANDNGFLGDMNSFGNQPLLKDENITYSATS 830

Query: 849  ESSRFSDPRPEGSKRLTSSVSALKELCTVEGLSLVF------QDHSVLEEEFHAQVEIGG 1010
            E SR  D R EGSK+   SV+ALKE C  EGL + F        +S+  EE HAQVEI G
Sbjct: 831  EPSRLLDQRLEGSKKSMGSVTALKEFCMTEGLGVNFLAQTPLSTNSIPGEEVHAQVEIDG 890

Query: 1011 RVLGKGVGLTWDEAKMLASEEALGSLKAMIAQGAQNHAESPRSLDVLSSKRQKLDFPQVL 1190
            +VLGKG+GLTWDEAKM A+E+ALGSL+ M  Q       SPR +  + +KR K +FP+VL
Sbjct: 891  QVLGKGIGLTWDEAKMQAAEKALGSLRTMFGQYTPKRQGSPRLMQGMPNKRLKQEFPRVL 950

Query: 1191 QRIPSS 1208
            QR+PSS
Sbjct: 951  QRMPSS 956


>ref|XP_003545893.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
            1-like [Glycine max]
          Length = 958

 Score =  355 bits (910), Expect = 4e-95
 Identities = 206/426 (48%), Positives = 261/426 (61%), Gaps = 24/426 (5%)
 Frame = +3

Query: 3    REEGEVPESELDPDTRRRLLILQHGQDNRDQILSEPPFPTRPTPQVSVPPLQVPIPPTVN 182
            REEGEVPESELD DTRRRLLILQHGQD R+   SEPP P R   QVS P        +V 
Sbjct: 534  REEGEVPESELDLDTRRRLLILQHGQDTREHTSSEPPLPVRHPTQVSAP--------SVP 585

Query: 183  PRGGWPSLEEKGGSRQLNQALPKPVQKELPLESEPKHFDKHRARHPPFFRPVESPVSSDR 362
             R GW S+EE+ G +QLNQ +PK    E P+ SEP H +K   RHP  F  V+  VSSDR
Sbjct: 586  SRRGWFSVEEEMGPQQLNQLVPK----EFPVGSEPLHIEKRWPRHPSLFSKVDDSVSSDR 641

Query: 363  YLYEN-QRL---AHRKDDRLRPNHSFPKHRSFSGEDIPLDPPLSNNGEHP---------- 500
              +E+ QRL    H +DD  R + S   + SF G+DIPL     +N +            
Sbjct: 642  VFHESHQRLPKEVHHRDDHSRLSQSLSSYHSFPGDDIPLSGSSYSNRDFDSESGRSLFHA 701

Query: 501  ---AGVLQNIARKCRTMVEFKPALVSSTELQFSVEVWFTGEKIGEGIGKTRREAQFQAAD 671
               AGVLQ IA KC T VEF  +LV+ST LQFS+E WF G+K+GEG G+TRREAQ +AA+
Sbjct: 702  DITAGVLQEIALKCGTKVEFLSSLVASTALQFSIEAWFAGKKVGEGFGRTRREAQNKAAE 761

Query: 672  HALRNLANKYLSNVLPDPISAYGDLNMLPNMKENGFLGDTKSSGYHTPIKEDLVQIFKPE 851
             +++ LA+ Y+S+   D  S YGD++       NGF+    S G     KE +      +
Sbjct: 762  CSIKQLADIYMSHAKDDSGSTYGDVSGFHGSNNNGFVSSGNSLGNQLLPKESVSFSTSSD 821

Query: 852  SSRFSDPRPEGSKRLTSSVSALKELCTVEGLSLVFQD-------HSVLEEEFHAQVEIGG 1010
            SSR SDPR E SKR T S+SALKE C +EGL+  FQ        H   ++E HAQVEI G
Sbjct: 822  SSRVSDPRLEVSKRSTDSISALKEFCMMEGLAANFQSSPAPASTHFAQKDEVHAQVEIDG 881

Query: 1011 RVLGKGVGLTWDEAKMLASEEALGSLKAMIAQGAQNHAESPRSLDVLSSKRQKLDFPQVL 1190
            ++ GKG GLTW+EAKM A+++AL SL+ M  QG +    SPRS+  L++KR K ++P+ L
Sbjct: 882  QIFGKGFGLTWEEAKMQAAKKALESLRTMFNQGTRKRHGSPRSMQGLANKRLKQEYPRTL 941

Query: 1191 QRIPSS 1208
            QRIP S
Sbjct: 942  QRIPYS 947


>ref|XP_002519032.1| double-stranded RNA binding protein, putative [Ricinus communis]
            gi|223541695|gb|EEF43243.1| double-stranded RNA binding
            protein, putative [Ricinus communis]
          Length = 978

 Score =  354 bits (909), Expect = 5e-95
 Identities = 207/427 (48%), Positives = 264/427 (61%), Gaps = 25/427 (5%)
 Frame = +3

Query: 3    REEGEVPESELDPDTRRRLLILQHGQDNRDQILSEPPFPTRPTP--QVSVPPLQVPIPPT 176
            REEGEVPESELDPDTRRRLLILQHGQD RD   SE PFP RP+   QVSVP +Q      
Sbjct: 553  REEGEVPESELDPDTRRRLLILQHGQDLRDPAPSESPFPVRPSNSMQVSVPRVQ------ 606

Query: 177  VNPRGGWPSLEEKGGSRQLNQALPKPVQKELPLESEPKHFDKHRARHPPFFRPVESPVSS 356
               RG W  +EE+   RQLN+A    V +E P+++EP H DKHR  HP FF  VES + S
Sbjct: 607  --SRGNWVPVEEEMSPRQLNRA----VTREFPMDTEPMHIDKHRPHHPSFFPKVESSIPS 660

Query: 357  DRYLYENQRL---AHRKDDRLRPNHSFPKHRSFSGEDIPLDPPLSNN------------- 488
            +R  +ENQRL   A  KDDRLR N +   ++S SGE+  L    S+N             
Sbjct: 661  ERMPHENQRLPKVAPYKDDRLRLNQTMSNYQSLSGEENSLSRSSSSNRDLDVESDRAVSS 720

Query: 489  GEHPAGVLQNIARKCRTMVEFKPALVSSTELQFSVEVWFTGEKIGEGIGKTRREAQFQAA 668
             E P  VL  I+ KC   VEFK +LV+S +LQFSVE WF GE++GEG G+TRREAQ  AA
Sbjct: 721  AETPVRVLHEISMKCGAKVEFKHSLVNSRDLQFSVEAWFAGERVGEGFGRTRREAQSVAA 780

Query: 669  DHALRNLANKYLSNVLPDPISAYGDLNMLPNMKENGFLGDTKSSGYHTPIKEDLVQIF-K 845
            + +++NLAN Y+S   PD  + +GD +   +  +NGFLG   S G     K++++     
Sbjct: 781  EASIKNLANIYISRAKPDNGALHGDASKYSSANDNGFLGHVNSFGSQPLPKDEILSYSDS 840

Query: 846  PESSRFSDPRPEGSKRLTSSVSALKELCTVEGLSLVF------QDHSVLEEEFHAQVEIG 1007
             E S   DPR E SK+  SSV+ALKE C +EGL + F        +SV   E HAQVEI 
Sbjct: 841  SEQSGLLDPRLESSKKSMSSVNALKEFCMMEGLGVNFLAQTPLSSNSVQNAEVHAQVEID 900

Query: 1008 GRVLGKGVGLTWDEAKMLASEEALGSLKAMIAQGAQNHAESPRSLDVLSSKRQKLDFPQV 1187
            G+V+GKG+G T+DEAKM A+E+ALGSL+    +       SPR +  + +K  K +FP+V
Sbjct: 901  GQVMGKGIGSTFDEAKMQAAEKALGSLRTTFGRFPPKRQGSPRPVPGMPNKHLKPEFPRV 960

Query: 1188 LQRIPSS 1208
            LQR+PSS
Sbjct: 961  LQRMPSS 967