BLASTX nr result
ID: Coptis23_contig00010367
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00010367
(1224 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003634850.1| PREDICTED: 50S ribosomal protein L4-like [Vi... 435 e-119
ref|XP_002518422.1| 50S ribosomal protein L4, putative [Ricinus ... 429 e-118
ref|XP_004134779.1| PREDICTED: 50S ribosomal protein L4-like [Cu... 427 e-117
emb|CAN77922.1| hypothetical protein VITISV_027648 [Vitis vinifera] 425 e-116
ref|NP_565463.1| large subunit ribosomal protein L4 [Arabidopsis... 424 e-116
>ref|XP_003634850.1| PREDICTED: 50S ribosomal protein L4-like [Vitis vinifera]
gi|297741766|emb|CBI32995.3| unnamed protein product
[Vitis vinifera]
Length = 315
Score = 435 bits (1118), Expect = e-119
Identities = 227/322 (70%), Positives = 257/322 (79%), Gaps = 23/322 (7%)
Frame = -2
Query: 1133 MAVSLSRKILLRSFG----------------------SLSGLNNSRGIVHRSFESRTSSS 1020
MAVS+SR+ LLR+FG +L GL + G+ +T SS
Sbjct: 1 MAVSISRR-LLRTFGPSRVFGHCNSPMIMCPLFRTSDALCGLVSQDGLFSTDSSCKTGSS 59
Query: 1019 EGGVLSFFARRIFCTST-LTPQSCEGAIPQELLMKQSVLAPDRTQGGYEDLIIPVTNFHY 843
F + R T+T LTP+S A P ELL ++VL P+RT G Y+DL+IPVTNFH
Sbjct: 60 ------FLSSRSLSTTTILTPESSGVAFPPELLSTKTVLTPERTPGHYQDLVIPVTNFHN 113
Query: 842 EDKGFMVLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKSISEVSGTGRKPWNQKGTG 663
EDKGFMVLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTK+ISEVSGTGRKPW QKGTG
Sbjct: 114 EDKGFMVLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWRQKGTG 173
Query: 662 RARHGSLRGPQFRHGAVMHGPKPRSHAFKLQKKVRRLGLKVALSARAAEGKLLIFEDLEV 483
RARHG+LRGPQFR GA+MHGPKPRSHA KL KKVRRLGLK+ALSAR AEGKLL+F+DLEV
Sbjct: 174 RARHGTLRGPQFRGGAIMHGPKPRSHAIKLNKKVRRLGLKIALSARTAEGKLLVFDDLEV 233
Query: 482 PTHKTKNVVNYVSQLESTKKLLVVDGGPINEKLKLATQNLHYVNVLPSIGLNVYSILLHD 303
P+HKTKN+VNYV ++E+TKKLL+VDGGPI EKLKLATQNLHYVNVLPSIGLNVYSILLHD
Sbjct: 234 PSHKTKNIVNYVKEMENTKKLLLVDGGPITEKLKLATQNLHYVNVLPSIGLNVYSILLHD 293
Query: 302 TLLMTRDAVNRIVERMHTPINR 237
TL+M+RDAVN+IVERMHTPINR
Sbjct: 294 TLVMSRDAVNKIVERMHTPINR 315
>ref|XP_002518422.1| 50S ribosomal protein L4, putative [Ricinus communis]
gi|223542267|gb|EEF43809.1| 50S ribosomal protein L4,
putative [Ricinus communis]
Length = 294
Score = 429 bits (1102), Expect = e-118
Identities = 222/302 (73%), Positives = 252/302 (83%), Gaps = 3/302 (0%)
Frame = -2
Query: 1133 MAVSLSRKILLRSFGSLSGLNNSRGIVHRSFESRTSSS---EGGVLSFFARRIFCTSTLT 963
MAVS+SR+IL RSF SL L H+SF + SS + G S R++ TS LT
Sbjct: 1 MAVSISRRIL-RSFRSLPSLT------HQSFRASHESSSFIKNGAASLACRKL-STSILT 52
Query: 962 PQSCEGAIPQELLMKQSVLAPDRTQGGYEDLIIPVTNFHYEDKGFMVLAGDVFDVPIRKD 783
P S + A P +LL +++L P+R G +EDL+IPVTNF EDKGFMVLAGDVFDVPI+K
Sbjct: 53 PGSSDDAFPSDLLSTKTLLTPEREIGLHEDLVIPVTNFLNEDKGFMVLAGDVFDVPIKKH 112
Query: 782 IVHRVVRWQLAKRQQGTHSTKSISEVSGTGRKPWNQKGTGRARHGSLRGPQFRHGAVMHG 603
I+HRVVRWQLAKRQQGTHSTK+ISEVSGTG+KP+ QKGTGRARHG+LRGPQFR GA MHG
Sbjct: 113 IIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPYRQKGTGRARHGTLRGPQFRGGATMHG 172
Query: 602 PKPRSHAFKLQKKVRRLGLKVALSARAAEGKLLIFEDLEVPTHKTKNVVNYVSQLESTKK 423
PKPRSHA K KKVRRLGLK+AL+ARAAEGKLL+FEDLE+PTHKTKN+VNYV Q+E TKK
Sbjct: 173 PKPRSHAIKCNKKVRRLGLKIALTARAAEGKLLVFEDLEIPTHKTKNIVNYVKQMEETKK 232
Query: 422 LLVVDGGPINEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLLMTRDAVNRIVERMHTPI 243
LL+VDGGPINEKLKLA QNLHYVNVLPSIGLNVYSILLHDTL+M+RDAVNRIVERMHTPI
Sbjct: 233 LLLVDGGPINEKLKLAAQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVNRIVERMHTPI 292
Query: 242 NR 237
NR
Sbjct: 293 NR 294
>ref|XP_004134779.1| PREDICTED: 50S ribosomal protein L4-like [Cucumis sativus]
gi|449531047|ref|XP_004172499.1| PREDICTED: 50S ribosomal
protein L4-like [Cucumis sativus]
Length = 315
Score = 427 bits (1099), Expect = e-117
Identities = 226/316 (71%), Positives = 256/316 (81%), Gaps = 17/316 (5%)
Frame = -2
Query: 1133 MAVSLSRKILLRSFGSLS--GLNNSRGIVHRSFE------------SRTSSSEGGVL--- 1005
MA+S+SR+ LLRS GSLS G NS + RSF S T +S +L
Sbjct: 1 MAISVSRR-LLRSVGSLSTFGQCNSSCTMSRSFSNPHEIYGHVSGSSSTFASRSTLLKAG 59
Query: 1004 SFFARRIFCTSTLTPQSCEGAIPQELLMKQSVLAPDRTQGGYEDLIIPVTNFHYEDKGFM 825
SF A R FCTS LTP+S A P ELL + V + +R G Y+DL+IPVTNF EDKGFM
Sbjct: 60 SFLASRGFCTSILTPESSNNAFPSELLSAKPVASEERKIGLYQDLMIPVTNFENEDKGFM 119
Query: 824 VLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKSISEVSGTGRKPWNQKGTGRARHGS 645
VLAGDVFD+PIRKDI+HRVVRWQLAKRQQGTHSTK+ISEVSGTGRKPW QKGTGRARHG+
Sbjct: 120 VLAGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWKQKGTGRARHGT 179
Query: 644 LRGPQFRHGAVMHGPKPRSHAFKLQKKVRRLGLKVALSARAAEGKLLIFEDLEVPTHKTK 465
LRGPQFR GA MHGPKPRSHAFKL KKVRRLGL +ALSAR AEGKLL+F++L+V THKTK
Sbjct: 180 LRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTK 239
Query: 464 NVVNYVSQLESTKKLLVVDGGPINEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLLMTR 285
N+V YVS++E+TKK+L+VDGGPI+EKLKLATQNLHYVNVLPSIGLNVYSILLHDTL+M+R
Sbjct: 240 NMVKYVSKMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSR 299
Query: 284 DAVNRIVERMHTPINR 237
DAV RIV RMHTPINR
Sbjct: 300 DAVERIVTRMHTPINR 315
>emb|CAN77922.1| hypothetical protein VITISV_027648 [Vitis vinifera]
Length = 278
Score = 425 bits (1092), Expect = e-116
Identities = 219/300 (73%), Positives = 248/300 (82%), Gaps = 1/300 (0%)
Frame = -2
Query: 1133 MAVSLSRKILLRSFGSLSGLNNSRGIVHRSFESRTSSSEGGVLSFFARRIFCTST-LTPQ 957
MAVS+SR+ LL +FG SR + S SF + R T+T LTP+
Sbjct: 1 MAVSISRR-LLXTFGP----------------SRLTGS-----SFLSSRSLSTTTMLTPE 38
Query: 956 SCEGAIPQELLMKQSVLAPDRTQGGYEDLIIPVTNFHYEDKGFMVLAGDVFDVPIRKDIV 777
S A P ELL ++VL P+RT G Y+DL+IPVTNFH EDKGFM LAGDVFDVPIRKDIV
Sbjct: 39 SSGVAFPPELLSTKTVLTPERTPGHYQDLVIPVTNFHNEDKGFMXLAGDVFDVPIRKDIV 98
Query: 776 HRVVRWQLAKRQQGTHSTKSISEVSGTGRKPWNQKGTGRARHGSLRGPQFRHGAVMHGPK 597
HRVVRWQLAKRQQGTHSTK+ISEVSGTG+KPW QKGTGRARHG+LRGPQFR GA+MHGPK
Sbjct: 99 HRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGAIMHGPK 158
Query: 596 PRSHAFKLQKKVRRLGLKVALSARAAEGKLLIFEDLEVPTHKTKNVVNYVSQLESTKKLL 417
PRSHA KL KKVRRLGLK+ALSAR AEGKLL+F+DLEVP+HKTKN+VNYV ++E+ KKLL
Sbjct: 159 PRSHAIKLNKKVRRLGLKIALSARTAEGKLLVFDDLEVPSHKTKNIVNYVKEMENXKKLL 218
Query: 416 VVDGGPINEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLLMTRDAVNRIVERMHTPINR 237
+VDGGPI EKLKLATQNLHYVNVLPSIGLNVYSILLHDTL+M+R+AVN+IVERMHTPINR
Sbjct: 219 LVDGGPITEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRBAVNKIVERMHTPINR 278
>ref|NP_565463.1| large subunit ribosomal protein L4 [Arabidopsis thaliana]
gi|18252969|gb|AAL62411.1| 50S ribosomal protein L4
[Arabidopsis thaliana] gi|20197568|gb|AAD24390.2| 50S
ribosomal protein L4 [Arabidopsis thaliana]
gi|25084070|gb|AAN72167.1| 50S ribosomal protein L4
[Arabidopsis thaliana] gi|330251866|gb|AEC06960.1| large
subunit ribosomal protein L4 [Arabidopsis thaliana]
Length = 300
Score = 424 bits (1090), Expect = e-116
Identities = 215/305 (70%), Positives = 253/305 (82%), Gaps = 6/305 (1%)
Frame = -2
Query: 1133 MAVSLSRKILLRSFGSLSGL------NNSRGIVHRSFESRTSSSEGGVLSFFARRIFCTS 972
MA S+SR+I R+FGS S L N S S T+ + G ++ + R TS
Sbjct: 1 MAASISRRIF-RTFGSFSALGRSSSPNLSANTSGNGLASLTNDLKYG-MALLSNRKLSTS 58
Query: 971 TLTPQSCEGAIPQELLMKQSVLAPDRTQGGYEDLIIPVTNFHYEDKGFMVLAGDVFDVPI 792
LTP + + P +LL K++VL PDRT G Y+DL+IPVTNF E+KGFMVLAGDVFDVPI
Sbjct: 59 ILTP---DDSFPSDLLTKKTVLTPDRTIGQYQDLVIPVTNFQNEEKGFMVLAGDVFDVPI 115
Query: 791 RKDIVHRVVRWQLAKRQQGTHSTKSISEVSGTGRKPWNQKGTGRARHGSLRGPQFRHGAV 612
RKDI+H VVRWQLAKRQQGTHSTK++SEVSGTGRKPWNQKGTGRARHG+LRGPQFR G V
Sbjct: 116 RKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRKPWNQKGTGRARHGTLRGPQFRGGCV 175
Query: 611 MHGPKPRSHAFKLQKKVRRLGLKVALSARAAEGKLLIFEDLEVPTHKTKNVVNYVSQLES 432
MHGPKPRSHA K+ K+VRRLGLK+AL+ARAAEGKLL+F+DL +PTHKTKN+VNY +Q+E+
Sbjct: 176 MHGPKPRSHAIKMNKQVRRLGLKIALTARAAEGKLLVFDDLGLPTHKTKNIVNYYNQMEN 235
Query: 431 TKKLLVVDGGPINEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLLMTRDAVNRIVERMH 252
TKK+LVV+GGPI+EKLKLATQNLHYVN++PSIGLNVYSILLHDTLLM+RDAVN+IVERMH
Sbjct: 236 TKKVLVVEGGPIDEKLKLATQNLHYVNIIPSIGLNVYSILLHDTLLMSRDAVNKIVERMH 295
Query: 251 TPINR 237
TPINR
Sbjct: 296 TPINR 300