BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00010312
         (742 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002309173.1| predicted protein [Populus trichocarpa] gi|2...   271   1e-70
ref|XP_003623530.1| Pentatricopeptide repeat-containing protein ...   270   2e-70
ref|XP_003533674.1| PREDICTED: pentatricopeptide repeat-containi...   263   4e-68
ref|XP_002265961.1| PREDICTED: pentatricopeptide repeat-containi...   256   3e-66
ref|XP_002533822.1| pentatricopeptide repeat-containing protein,...   256   4e-66

>ref|XP_002309173.1| predicted protein [Populus trichocarpa] gi|222855149|gb|EEE92696.1|
           predicted protein [Populus trichocarpa]
          Length = 506

 Score =  271 bits (692), Expect = 1e-70
 Identities = 131/246 (53%), Positives = 186/246 (75%)
 Frame = -3

Query: 740 QVLLKSWGMNIRLEESTFKILITALCKLKKIGYAIEILDSMSEYGYDPDSTLYSRILSAM 561
           ++LLKS  MNIR+EESTF++LITALC+++K+G+AIE+L+ M   G+  ++ +YS +LS +
Sbjct: 170 EILLKSQVMNIRVEESTFQVLITALCRVRKVGFAIEMLNCMVNDGFIVNAEIYSLLLSCL 229

Query: 560 CKLRDVSSVEVWGFLEEMRAKGFTPNEVDYANVVSFLVKVGKGMDALDLMEQMKLDRIKP 381
           C+ +D +  EV GFLE++R  GF P  VDY+NV+ FLVK  +G+DAL ++  MK DRIKP
Sbjct: 230 CEQKDATKFEVIGFLEQLRKLGFFPGMVDYSNVIRFLVKGKRGLDALHVLNHMKSDRIKP 289

Query: 380 DVVVYTCVLDGVITAGDFDKAEEVFDEMLVLGVVPDVHTYNVYLKGLCMQNSFEAGFKLV 201
           D+  YT VL GVI   D+ KA+E+FDE+LV G+VPD +TYNVY+ GLC QN+ +AG K+V
Sbjct: 290 DIFCYTMVLHGVIEDKDYLKADELFDELLVFGLVPDAYTYNVYINGLCKQNNVQAGIKMV 349

Query: 200 ACMEELGCKPDVSTYNTLMGALCKVGKVTIAKELLTKMRLKGLQGNLHSYSILINGSMCE 21
           A MEELGCKP++ TYN L+  LCKVG+++ A EL+ +M LKG+  N+ +Y I+I+G    
Sbjct: 350 ASMEELGCKPNLITYNMLVKQLCKVGELSKAGELVREMGLKGIGLNMQTYRIMIDGLASN 409

Query: 20  GEVGEA 3
           G++ EA
Sbjct: 410 GKIVEA 415



 Score = 60.8 bits (146), Expect = 3e-07
 Identities = 43/167 (25%), Positives = 82/167 (49%), Gaps = 1/167 (0%)
 Frame = -3

Query: 641 AIEILDSMSEYGYDPDSTLYSRILSAMCKLRDVSS-VEVWGFLEEMRAKGFTPNEVDYAN 465
           A E+ D +  +G  PD+  Y+  ++ +CK  +V + +++   +EE+  K   PN + Y  
Sbjct: 310 ADELFDELLVFGLVPDAYTYNVYINGLCKQNNVQAGIKMVASMEELGCK---PNLITYNM 366

Query: 464 VVSFLVKVGKGMDALDLMEQMKLDRIKPDVVVYTCVLDGVITAGDFDKAEEVFDEMLVLG 285
           +V  L KVG+   A +L+ +M L  I  ++  Y  ++DG+ + G   +A  +F+E L  G
Sbjct: 367 LVKQLCKVGELSKAGELVREMGLKGIGLNMQTYRIMIDGLASNGKIVEACGLFEEALDKG 426

Query: 284 VVPDVHTYNVYLKGLCMQNSFEAGFKLVACMEELGCKPDVSTYNTLM 144
           +      ++  + GLC ++      KL+  M      P    +  L+
Sbjct: 427 LCTQSLMFDEIICGLCHRDLSCKALKLLEKMVGKNVSPGARAWKALL 473


>ref|XP_003623530.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355498545|gb|AES79748.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 653

 Score =  270 bits (690), Expect = 2e-70
 Identities = 132/248 (53%), Positives = 186/248 (75%), Gaps = 3/248 (1%)
 Frame = -3

Query: 737 VLLKSWGMNIRLEESTFKILITALCKLKKIGYAIEILDSMSEYGYDPDSTLYSRILSAMC 558
           +LLKS  M IRLEES+F +LI ALC++K++ YAI++++ M E GY  D  + S I+S++C
Sbjct: 170 ILLKSRDMKIRLEESSFWVLIKALCRIKRVDYAIKMMNCMVEDGYCLDDKICSLIISSLC 229

Query: 557 KLRDVSSVE---VWGFLEEMRAKGFTPNEVDYANVVSFLVKVGKGMDALDLMEQMKLDRI 387
           +  D++SVE   VWG    MR  GF P  +D  N++ FLVK GKGMDAL+++ Q+K D I
Sbjct: 230 EQNDLTSVEALVVWG---NMRKLGFCPGVMDCTNMIRFLVKEGKGMDALEILNQLKEDGI 286

Query: 386 KPDVVVYTCVLDGVITAGDFDKAEEVFDEMLVLGVVPDVHTYNVYLKGLCMQNSFEAGFK 207
           KPD+V YT VL G++  GD+ K +E+FDE+LVLG+VPDV+TYNVY+ GLC QN+F+   K
Sbjct: 287 KPDIVCYTIVLSGIVKEGDYVKLDELFDEILVLGLVPDVYTYNVYINGLCKQNNFDEALK 346

Query: 206 LVACMEELGCKPDVSTYNTLMGALCKVGKVTIAKELLTKMRLKGLQGNLHSYSILINGSM 27
           +V  ME+LGCKP+V TYNTL+GALC  G +  AK ++ +MRLKG++ NLH+Y I+++G +
Sbjct: 347 IVVSMEKLGCKPNVVTYNTLLGALCMSGDLGKAKRVMKEMRLKGVELNLHTYRIMLDGLV 406

Query: 26  CEGEVGEA 3
            +GE+GEA
Sbjct: 407 GKGEIGEA 414


>ref|XP_003533674.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420,
           mitochondrial-like [Glycine max]
          Length = 499

 Score =  263 bits (671), Expect = 4e-68
 Identities = 125/246 (50%), Positives = 180/246 (73%)
 Frame = -3

Query: 740 QVLLKSWGMNIRLEESTFKILITALCKLKKIGYAIEILDSMSEYGYDPDSTLYSRILSAM 561
           ++LLKS  MNIR+EESTF++LI ALC++K++GYAI++L+ M E GY  D  + S ++SA+
Sbjct: 175 EILLKSQHMNIRVEESTFRVLIRALCRIKRVGYAIKMLNFMVEDGYGLDEKICSLVISAL 234

Query: 560 CKLRDVSSVEVWGFLEEMRAKGFTPNEVDYANVVSFLVKVGKGMDALDLMEQMKLDRIKP 381
           C+ +D++S E      +MR  GF P  +DY N++ FLVK G+GMDALD++ Q K D IK 
Sbjct: 235 CEQKDLTSAEALVVWRDMRKLGFCPGVMDYTNMIRFLVKEGRGMDALDILNQQKQDGIKL 294

Query: 380 DVVVYTCVLDGVITAGDFDKAEEVFDEMLVLGVVPDVHTYNVYLKGLCMQNSFEAGFKLV 201
           DVV YT VL G++  G++   +E+FDEMLV+G++PD +TYNVY+ GLC QN+     ++V
Sbjct: 295 DVVSYTMVLSGIVAEGEYVMLDELFDEMLVIGLIPDAYTYNVYINGLCKQNNVAEALQIV 354

Query: 200 ACMEELGCKPDVSTYNTLMGALCKVGKVTIAKELLTKMRLKGLQGNLHSYSILINGSMCE 21
           A MEELGCKP+V TYNTL+GAL   G    A+EL+ +M  KG+  NLH+Y I+++G + +
Sbjct: 355 ASMEELGCKPNVVTYNTLLGALSVAGDFVKARELMKEMGWKGVGLNLHTYRIVLDGLVGK 414

Query: 20  GEVGEA 3
           GE+GE+
Sbjct: 415 GEIGES 420


>ref|XP_002265961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420,
           mitochondrial-like [Vitis vinifera]
          Length = 505

 Score =  256 bits (654), Expect = 3e-66
 Identities = 128/246 (52%), Positives = 174/246 (70%)
 Frame = -3

Query: 740 QVLLKSWGMNIRLEESTFKILITALCKLKKIGYAIEILDSMSEYGYDPDSTLYSRILSAM 561
           Q+LLKS  MNIRLEES+F+IL+ ALC++KK  YAI IL+ M   GY  D+ + S ILS++
Sbjct: 170 QILLKSQAMNIRLEESSFRILVAALCRIKKHNYAIRILNYMLNDGYAVDAKMCSIILSSL 229

Query: 560 CKLRDVSSVEVWGFLEEMRAKGFTPNEVDYANVVSFLVKVGKGMDALDLMEQMKLDRIKP 381
           C+ + +S  EV  F+EEMR  GF P  VD  NV+ FLVK G  MDAL + +QMK D IKP
Sbjct: 230 CEQKGLSGDEVLRFMEEMRKLGFYPGRVDCNNVIRFLVKEGMVMDALGVFDQMKTDGIKP 289

Query: 380 DVVVYTCVLDGVITAGDFDKAEEVFDEMLVLGVVPDVHTYNVYLKGLCMQNSFEAGFKLV 201
           D V YT +L+GV   GD++KA+++FDEMLVLGVVPD+H YNVY+  LC QN+ E G +++
Sbjct: 290 DTVSYTMILNGVTADGDYEKADDLFDEMLVLGVVPDIHAYNVYINSLCKQNNIEEGVRML 349

Query: 200 ACMEELGCKPDVSTYNTLMGALCKVGKVTIAKELLTKMRLKGLQGNLHSYSILINGSMCE 21
           A M ELGCKPD  TYN L+  + KV  +   +EL  +M L+G+Q N  +Y I+++G + +
Sbjct: 350 ASMRELGCKPDYVTYNMLLEGMSKVRDLGGMRELAREMELEGVQWNWETYRIMLDGLVGK 409

Query: 20  GEVGEA 3
           GE+ E+
Sbjct: 410 GEIDES 415


>ref|XP_002533822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223526239|gb|EEF28557.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 373

 Score =  256 bits (653), Expect = 4e-66
 Identities = 125/246 (50%), Positives = 179/246 (72%)
 Frame = -3

Query: 740 QVLLKSWGMNIRLEESTFKILITALCKLKKIGYAIEILDSMSEYGYDPDSTLYSRILSAM 561
           +VLLKS  MNIR+EES+F++LI ALC + K+GYA+E+ + M   G+  DS + S +LS++
Sbjct: 42  EVLLKSQDMNIRMEESSFRLLINALCSINKVGYAVEMFNCMINDGFSVDSKICSLLLSSL 101

Query: 560 CKLRDVSSVEVWGFLEEMRAKGFTPNEVDYANVVSFLVKVGKGMDALDLMEQMKLDRIKP 381
           C   D+SS EV  FL E+R  GF P   DY+ V++FLV+ G GM+AL+++ QMKLD IKP
Sbjct: 102 CYQADISSSEVMRFLGELRKFGFCPGIKDYSKVINFLVRRGMGMEALNVLNQMKLDGIKP 161

Query: 380 DVVVYTCVLDGVITAGDFDKAEEVFDEMLVLGVVPDVHTYNVYLKGLCMQNSFEAGFKLV 201
           D+V YT VL+GVI  G + KA+E+FDE+LV G+VPDV+TYNVY+ GLC QN+ EAG ++V
Sbjct: 162 DIVCYTTVLNGVIANGVYSKADELFDELLVFGLVPDVYTYNVYIYGLCKQNNVEAGIEMV 221

Query: 200 ACMEELGCKPDVSTYNTLMGALCKVGKVTIAKELLTKMRLKGLQGNLHSYSILINGSMCE 21
             MEELGCKP++ TYN L+  LCK G+ + A++L+  M  KG+   + +Y ++I+G    
Sbjct: 222 TSMEELGCKPNLITYNILLEDLCKNGEDSRARDLVRDMGSKGIGLGMQTYKVMIHGLTSG 281

Query: 20  GEVGEA 3
           G++ +A
Sbjct: 282 GKIVKA 287