BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00010302
         (239 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263359.1| PREDICTED: small nuclear ribonucleoprotein-a...   130   8e-29
ref|XP_002332199.1| predicted protein [Populus trichocarpa] gi|2...   127   7e-28
ref|XP_002317685.1| predicted protein [Populus trichocarpa] gi|2...   127   7e-28
gb|ABK93409.1| unknown [Populus trichocarpa]                          127   7e-28
ref|NP_193777.1| small nuclear ribonucleoprotein associated prot...   126   2e-27

>ref|XP_002263359.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B'
           [Vitis vinifera] gi|147774905|emb|CAN61706.1|
           hypothetical protein VITISV_001610 [Vitis vinifera]
          Length = 276

 Score =  130 bits (328), Expect = 8e-29
 Identities = 62/64 (96%), Positives = 64/64 (100%)
 Frame = +2

Query: 2   MSMSKSSKMLQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNE 181
           MSMSKSSKMLQYINYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNE
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNE 60

Query: 182 ERED 193
           ERE+
Sbjct: 61  EREE 64


>ref|XP_002332199.1| predicted protein [Populus trichocarpa] gi|222875306|gb|EEF12437.1|
           predicted protein [Populus trichocarpa]
          Length = 289

 Score =  127 bits (320), Expect = 7e-28
 Identities = 63/65 (96%), Positives = 64/65 (98%), Gaps = 1/65 (1%)
 Frame = +2

Query: 2   MSMSKSSKMLQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK-N 178
           MSMSKSSKMLQYINYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKGKK N
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60

Query: 179 EERED 193
           EERED
Sbjct: 61  EERED 65


>ref|XP_002317685.1| predicted protein [Populus trichocarpa] gi|222860750|gb|EEE98297.1|
           predicted protein [Populus trichocarpa]
          Length = 250

 Score =  127 bits (320), Expect = 7e-28
 Identities = 63/65 (96%), Positives = 64/65 (98%), Gaps = 1/65 (1%)
 Frame = +2

Query: 2   MSMSKSSKMLQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK-N 178
           MSMSKSSKMLQYINYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKGKK N
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60

Query: 179 EERED 193
           EERED
Sbjct: 61  EERED 65


>gb|ABK93409.1| unknown [Populus trichocarpa]
          Length = 286

 Score =  127 bits (320), Expect = 7e-28
 Identities = 63/65 (96%), Positives = 64/65 (98%), Gaps = 1/65 (1%)
 Frame = +2

Query: 2   MSMSKSSKMLQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK-N 178
           MSMSKSSKMLQYINYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKGKK N
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60

Query: 179 EERED 193
           EERED
Sbjct: 61  EERED 65


>ref|NP_193777.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
           thaliana] gi|30685110|ref|NP_849414.1| small nuclear
           ribonucleoprotein associated protein B [Arabidopsis
           thaliana] gi|79325195|ref|NP_001031682.1| small nuclear
           ribonucleoprotein associated protein B [Arabidopsis
           thaliana] gi|238480869|ref|NP_001154258.1| small nuclear
           ribonucleoprotein associated protein B [Arabidopsis
           thaliana] gi|5262167|emb|CAB45810.1| putative snRNP
           protein [Arabidopsis thaliana]
           gi|7268840|emb|CAB79044.1| putative snRNP protein
           [Arabidopsis thaliana] gi|28393634|gb|AAO42236.1|
           putative snRNP protein [Arabidopsis thaliana]
           gi|28827492|gb|AAO50590.1| putative snRNP protein
           [Arabidopsis thaliana] gi|222423490|dbj|BAH19715.1|
           AT4G20440 [Arabidopsis thaliana]
           gi|332658930|gb|AEE84330.1| small nuclear
           ribonucleoprotein associated protein B [Arabidopsis
           thaliana] gi|332658931|gb|AEE84331.1| small nuclear
           ribonucleoprotein associated protein B [Arabidopsis
           thaliana] gi|332658932|gb|AEE84332.1| small nuclear
           ribonucleoprotein associated protein B [Arabidopsis
           thaliana] gi|332658933|gb|AEE84333.1| small nuclear
           ribonucleoprotein associated protein B [Arabidopsis
           thaliana]
          Length = 257

 Score =  126 bits (316), Expect = 2e-27
 Identities = 62/65 (95%), Positives = 64/65 (98%), Gaps = 1/65 (1%)
 Frame = +2

Query: 2   MSMSKSSKMLQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK-N 178
           MSMSKSSKMLQ+INYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKGKK N
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60

Query: 179 EERED 193
           EERED
Sbjct: 61  EERED 65