BLASTX nr result
ID: Coptis23_contig00010297
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis23_contig00010297 (1342 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002285479.1| PREDICTED: uncharacterized RNA-binding prote... 548 e-153 emb|CBI16387.3| unnamed protein product [Vitis vinifera] 536 e-150 ref|XP_003632115.1| PREDICTED: uncharacterized RNA-binding prote... 528 e-147 ref|XP_003597428.1| RNA-binding protein [Medicago truncatula] gi... 489 e-136 ref|XP_004152401.1| PREDICTED: polyadenylate-binding protein RBP... 488 e-135 >ref|XP_002285479.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like isoform 1 [Vitis vinifera] Length = 447 Score = 548 bits (1412), Expect = e-153 Identities = 273/377 (72%), Positives = 302/377 (80%), Gaps = 2/377 (0%) Frame = +2 Query: 2 IIRNKITQQPEGYGFVEFASHGAAERVLQTYNGTLMPGTDQPFRLNWASFGIGERRPDAG 181 IIRNKIT QPEGYGFVEF SH AAER+LQ YNGT MPGT+Q FRLNWASFGIGERRPDAG Sbjct: 72 IIRNKITGQPEGYGFVEFVSHAAAERILQAYNGTQMPGTEQTFRLNWASFGIGERRPDAG 131 Query: 182 PEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADEMERNR 361 PEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGR+KGYGFVKF+DEMERNR Sbjct: 132 PEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYGFVKFSDEMERNR 191 Query: 362 AMSEMNGVYCSSRPMRISAATPKKATGFQQPY--TAPKVYPTPAFGTAAVQPFPAVDNDI 535 AM+EMNGVYCS+RPMRISAATPKK TGFQQ Y A +YP PA+ T +Q PA DNDI Sbjct: 192 AMTEMNGVYCSTRPMRISAATPKKTTGFQQQYAAAAKALYPAPAYTTPPLQALPA-DNDI 250 Query: 536 TNTTIFVGGLDPNVTEEELRQIFAQFGDLVYAKTIPGKGCGFVQFGTRQSAEAAIQRLNG 715 NTTIFVG LDPNVTEEEL+QIF+QFG+LVY K G+GCGFVQFGTR SAE AIQR+ G Sbjct: 251 NNTTIFVGNLDPNVTEEELKQIFSQFGELVYVKIPAGRGCGFVQFGTRTSAEEAIQRMQG 310 Query: 716 TMIGQQTVRLSWGRNMTAKQDQPGAWAQPADPNQWSXXXXXXXXXXXXXXXXXXPDPSLX 895 T+IGQ VR+SWGR+ TAKQD PG+W Q ADP+QWS DPSL Sbjct: 311 TVIGQLVVRISWGRSPTAKQDLPGSWGQQADPSQWSSAYYGYGQGYDAYPYGATQDPSLY 370 Query: 896 XXXXXXXXXXXXXXXEGMQEMVAMAGAVPSVEQKEELYDPLATPDVDKLNSAYLAVHGSA 1075 EG+Q++ AMAGAVP+VEQ++ELYDPLATPDVDKLN+AYLAVHGSA Sbjct: 371 AYGAYAGYLQYPQQAEGVQDLAAMAGAVPAVEQRDELYDPLATPDVDKLNAAYLAVHGSA 430 Query: 1076 MVGRTLWLKTSALYQQA 1126 ++GR+LWLKTS Q A Sbjct: 431 ILGRSLWLKTSPFSQMA 447 Score = 57.4 bits (137), Expect = 8e-06 Identities = 54/216 (25%), Positives = 85/216 (39%), Gaps = 9/216 (4%) Frame = +2 Query: 191 SIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADEMERNRAMS 370 ++++GDL V + L F A V K++ + TG+ +GYGFV+F R + Sbjct: 42 TLWIGDLQYWVDENYLHSCF-AHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQ 100 Query: 371 EMNGVYCSSRPMRISAATPKKATGFQQPYTAPKVYPTPAFGTAAVQPFPAVDNDITNTTI 550 NG G ++P P+ +I Sbjct: 101 AYNGTQMPGTEQTFRLNWASFGIGERRPDAGPE------------------------HSI 136 Query: 551 FVGGLDPNVTEEELRQIF-AQFGDLVYAKTIPG------KGCGFVQFGTRQSAEAAIQRL 709 FVG L P+VT+ L++ F AQ+ + AK + KG GFV+F A+ + Sbjct: 137 FVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYGFVKFSDEMERNRAMTEM 196 Query: 710 NGTMIGQQTVRLSWG--RNMTAKQDQPGAWAQPADP 811 NG + +R+S + T Q Q A A+ P Sbjct: 197 NGVYCSTRPMRISAATPKKTTGFQQQYAAAAKALYP 232 >emb|CBI16387.3| unnamed protein product [Vitis vinifera] Length = 445 Score = 536 bits (1380), Expect = e-150 Identities = 270/377 (71%), Positives = 298/377 (79%), Gaps = 2/377 (0%) Frame = +2 Query: 2 IIRNKITQQPEGYGFVEFASHGAAERVLQTYNGTLMPGTDQPFRLNWASFGIGERRPDAG 181 IIRNKIT QPEGYGFVEF SH AAER+LQ YNGT MPGT+Q FRLNWASFGIGERRPDAG Sbjct: 72 IIRNKITGQPEGYGFVEFVSHAAAERILQAYNGTQMPGTEQTFRLNWASFGIGERRPDAG 131 Query: 182 PEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADEMERNR 361 PEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGR+KGYGFVKF+DEMERNR Sbjct: 132 PEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYGFVKFSDEMERNR 191 Query: 362 AMSEMNGVYCSSRPMRISAATPKKATGFQQPY--TAPKVYPTPAFGTAAVQPFPAVDNDI 535 AM+EMNGVYCS+RPMRISAATPKK TGFQQ Y A +YP PA+ T +Q PA DNDI Sbjct: 192 AMTEMNGVYCSTRPMRISAATPKKTTGFQQQYAAAAKALYPAPAYTTPPLQALPA-DNDI 250 Query: 536 TNTTIFVGGLDPNVTEEELRQIFAQFGDLVYAKTIPGKGCGFVQFGTRQSAEAAIQRLNG 715 NTTIFVG LDPNVTEEEL+QIF+QFG+LVY K G+GCGFVQFGTR SAE AIQR+ G Sbjct: 251 NNTTIFVGNLDPNVTEEELKQIFSQFGELVYVKIPAGRGCGFVQFGTRTSAEEAIQRMQG 310 Query: 716 TMIGQQTVRLSWGRNMTAKQDQPGAWAQPADPNQWSXXXXXXXXXXXXXXXXXXPDPSLX 895 T+IGQ VR+SWGR+ TAKQD PG+W Q ADP+QWS DPSL Sbjct: 311 TVIGQLVVRISWGRSPTAKQDLPGSWGQQADPSQWSSAYYGYGQGYDAYPYGATQDPSL- 369 Query: 896 XXXXXXXXXXXXXXXEGMQEMVAMAGAVPSVEQKEELYDPLATPDVDKLNSAYLAVHGSA 1075 + + AMAGAVP+VEQ++ELYDPLATPDVDKLN+AYLAVHGSA Sbjct: 370 -YAYGAYAGYLQYPQQARYYLAAMAGAVPAVEQRDELYDPLATPDVDKLNAAYLAVHGSA 428 Query: 1076 MVGRTLWLKTSALYQQA 1126 ++GR+LWLKTS Q A Sbjct: 429 ILGRSLWLKTSPFSQMA 445 Score = 57.4 bits (137), Expect = 8e-06 Identities = 54/216 (25%), Positives = 85/216 (39%), Gaps = 9/216 (4%) Frame = +2 Query: 191 SIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADEMERNRAMS 370 ++++GDL V + L F A V K++ + TG+ +GYGFV+F R + Sbjct: 42 TLWIGDLQYWVDENYLHSCF-AHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQ 100 Query: 371 EMNGVYCSSRPMRISAATPKKATGFQQPYTAPKVYPTPAFGTAAVQPFPAVDNDITNTTI 550 NG G ++P P+ +I Sbjct: 101 AYNGTQMPGTEQTFRLNWASFGIGERRPDAGPE------------------------HSI 136 Query: 551 FVGGLDPNVTEEELRQIF-AQFGDLVYAKTIPG------KGCGFVQFGTRQSAEAAIQRL 709 FVG L P+VT+ L++ F AQ+ + AK + KG GFV+F A+ + Sbjct: 137 FVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYGFVKFSDEMERNRAMTEM 196 Query: 710 NGTMIGQQTVRLSWG--RNMTAKQDQPGAWAQPADP 811 NG + +R+S + T Q Q A A+ P Sbjct: 197 NGVYCSTRPMRISAATPKKTTGFQQQYAAAAKALYP 232 >ref|XP_003632115.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like isoform 2 [Vitis vinifera] Length = 438 Score = 528 bits (1359), Expect = e-147 Identities = 268/377 (71%), Positives = 296/377 (78%), Gaps = 2/377 (0%) Frame = +2 Query: 2 IIRNKITQQPEGYGFVEFASHGAAERVLQTYNGTLMPGTDQPFRLNWASFGIGERRPDAG 181 IIRNKIT QPEGYGFVEF SH AAER+LQ YNGT MPGT+Q FRLNWASFGIGERRPDAG Sbjct: 72 IIRNKITGQPEGYGFVEFVSHAAAERILQAYNGTQMPGTEQTFRLNWASFGIGERRPDAG 131 Query: 182 PEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADEMERNR 361 PEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGR+KGYGFVKF+DEMERNR Sbjct: 132 PEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYGFVKFSDEMERNR 191 Query: 362 AMSEMNGVYCSSRPMRISAATPKKATGFQQPY--TAPKVYPTPAFGTAAVQPFPAVDNDI 535 AM+EMNGVYCS+RPMRISAATPKK TGFQQ Y A +YP PA+ T +Q PA DNDI Sbjct: 192 AMTEMNGVYCSTRPMRISAATPKKTTGFQQQYAAAAKALYPAPAYTTPPLQALPA-DNDI 250 Query: 536 TNTTIFVGGLDPNVTEEELRQIFAQFGDLVYAKTIPGKGCGFVQFGTRQSAEAAIQRLNG 715 NTTIFVG LDPNVTEEEL+QIF+QFG+LVY K G+GCGFVQFGTR SAE AIQR+ G Sbjct: 251 NNTTIFVGNLDPNVTEEELKQIFSQFGELVYVKIPAGRGCGFVQFGTRTSAEEAIQRMQG 310 Query: 716 TMIGQQTVRLSWGRNMTAKQDQPGAWAQPADPNQWSXXXXXXXXXXXXXXXXXXPDPSLX 895 T+IGQ VR+SWGR+ TAKQ ADP+QWS DPSL Sbjct: 311 TVIGQLVVRISWGRSPTAKQ---------ADPSQWSSAYYGYGQGYDAYPYGATQDPSLY 361 Query: 896 XXXXXXXXXXXXXXXEGMQEMVAMAGAVPSVEQKEELYDPLATPDVDKLNSAYLAVHGSA 1075 EG+Q++ AMAGAVP+VEQ++ELYDPLATPDVDKLN+AYLAVHGSA Sbjct: 362 AYGAYAGYLQYPQQAEGVQDLAAMAGAVPAVEQRDELYDPLATPDVDKLNAAYLAVHGSA 421 Query: 1076 MVGRTLWLKTSALYQQA 1126 ++GR+LWLKTS Q A Sbjct: 422 ILGRSLWLKTSPFSQMA 438 Score = 57.4 bits (137), Expect = 8e-06 Identities = 54/216 (25%), Positives = 85/216 (39%), Gaps = 9/216 (4%) Frame = +2 Query: 191 SIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADEMERNRAMS 370 ++++GDL V + L F A V K++ + TG+ +GYGFV+F R + Sbjct: 42 TLWIGDLQYWVDENYLHSCF-AHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQ 100 Query: 371 EMNGVYCSSRPMRISAATPKKATGFQQPYTAPKVYPTPAFGTAAVQPFPAVDNDITNTTI 550 NG G ++P P+ +I Sbjct: 101 AYNGTQMPGTEQTFRLNWASFGIGERRPDAGPE------------------------HSI 136 Query: 551 FVGGLDPNVTEEELRQIF-AQFGDLVYAKTIPG------KGCGFVQFGTRQSAEAAIQRL 709 FVG L P+VT+ L++ F AQ+ + AK + KG GFV+F A+ + Sbjct: 137 FVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYGFVKFSDEMERNRAMTEM 196 Query: 710 NGTMIGQQTVRLSWG--RNMTAKQDQPGAWAQPADP 811 NG + +R+S + T Q Q A A+ P Sbjct: 197 NGVYCSTRPMRISAATPKKTTGFQQQYAAAAKALYP 232 >ref|XP_003597428.1| RNA-binding protein [Medicago truncatula] gi|355486476|gb|AES67679.1| RNA-binding protein [Medicago truncatula] Length = 428 Score = 489 bits (1260), Expect = e-136 Identities = 252/386 (65%), Positives = 289/386 (74%), Gaps = 11/386 (2%) Frame = +2 Query: 2 IIRNKITQQPEGYGFVEFASHGAAERVLQTYNGTLMPGTDQPFRLNWASFGIGERRPDAG 181 IIRNKIT QPEGYGF+EF SH AAERVLQTYNGT MPGT+Q FRLNWASFGIGERRPDAG Sbjct: 46 IIRNKITGQPEGYGFIEFVSHSAAERVLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAG 105 Query: 182 PEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADEMERNR 361 P+HSIFVGDLAPDVTDYLLQETFR Y SVRGAKVVTDPNTGRSKGYGFVKF+DE ERNR Sbjct: 106 PDHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNR 165 Query: 362 AMSEMNGVYCSSRPMRISAATPKKATGFQQ-PYTA-------PK-VYPTPAFGTAAVQPF 514 AMSEMNGVYCS+RPMRISAATPKK TG+QQ PY A PK +YP PA+ TA V Sbjct: 166 AMSEMNGVYCSTRPMRISAATPKKTTGYQQNPYAAVVAAAPVPKAIYPVPAYTTAPVNTV 225 Query: 515 PAVDNDITNTTIFVGGLDPNVTEEELRQIFAQFGDLVYAKTIPGKGCGFVQFGTRQSAEA 694 P + D+ NTTI+VG LD NV+EEEL+Q F QFG++V K PGK CGFVQFG R SAE Sbjct: 226 PP-EYDVNNTTIYVGNLDLNVSEEELKQNFLQFGEIVSVKVHPGKACGFVQFGARASAEE 284 Query: 695 AIQRLNGTMIGQQTVRLSWGRNMTAKQDQPGAWAQPADPNQWSXXXXXXXXXXXXXXXXX 874 AIQ++ G ++GQQ +R+SWGR TA+QD PG W Q D +QWS Sbjct: 285 AIQKMQGKILGQQVIRVSWGRPQTARQDVPGGWGQQVDQSQWSAYYGYGQPGYEAYAYGA 344 Query: 875 XPDPSLXXXXXXXXXXXXXXXXEGMQEMVAMAGAVPSVEQKEELYDPLATPDVDKLNSAY 1054 DPS+ EG Q++ AM +VP++EQ+EELYDPLA PDVDKLN+AY Sbjct: 345 AQDPSMYAYAGYASYAQYPQQVEGAQDVSAM--SVPTLEQREELYDPLAMPDVDKLNAAY 402 Query: 1055 LAVHGSAMVGRTLWLKT--SALYQQA 1126 L+VHG+A++GR+LW KT S+L QQA Sbjct: 403 LSVHGNAILGRSLWHKTHSSSLQQQA 428 Score = 57.8 bits (138), Expect = 6e-06 Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 9/216 (4%) Frame = +2 Query: 191 SIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADEMERNRAMS 370 ++++GDL V + L F + V K++ + TG+ +GYGF++F R + Sbjct: 16 TLWIGDLQYWVDENYLTHCF-SHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQ 74 Query: 371 EMNGVYCSSRPMRISAATPKKATGFQQPYTAPKVYPTPAFGTAAVQPFPAVDNDITNTTI 550 NG + G +Q + +FG +P D+ +I Sbjct: 75 TYNGT---------------QMPGTEQTFR----LNWASFGIGERRPDAGPDH-----SI 110 Query: 551 FVGGLDPNVTEEELRQIF-AQFGDLVYAKTIP------GKGCGFVQFGTRQSAEAAIQRL 709 FVG L P+VT+ L++ F +G + AK + KG GFV+F A+ + Sbjct: 111 FVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEM 170 Query: 710 NGTMIGQQTVRLSWG--RNMTAKQDQPGAWAQPADP 811 NG + +R+S + T Q P A A P Sbjct: 171 NGVYCSTRPMRISAATPKKTTGYQQNPYAAVVAAAP 206 >ref|XP_004152401.1| PREDICTED: polyadenylate-binding protein RBP47B'-like [Cucumis sativus] Length = 422 Score = 488 bits (1255), Expect = e-135 Identities = 255/375 (68%), Positives = 279/375 (74%), Gaps = 1/375 (0%) Frame = +2 Query: 2 IIRNKITQQPEGYGFVEFASHGAAERVLQTYNGTLMPGTDQPFRLNWASFGIGERRPDAG 181 IIRNKIT QPEGYGFVEF SH AAER+LQTYNGT MPGT+Q FRLNWASFGIGERRPDAG Sbjct: 51 IIRNKITGQPEGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAG 110 Query: 182 PEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADEMERNR 361 PEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADE ERNR Sbjct: 111 PEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNR 170 Query: 362 AMSEMNGVYCSSRPMRISAATPKKATGFQQPYTAPK-VYPTPAFGTAAVQPFPAVDNDIT 538 AMSEMNGVYCS+RPMRISAATPKK G QQ Y+ K +YP PA+ T +V PA D D Sbjct: 171 AMSEMNGVYCSTRPMRISAATPKKTIGVQQQYSLGKAMYPVPAY-TTSVPVLPA-DYDAN 228 Query: 539 NTTIFVGGLDPNVTEEELRQIFAQFGDLVYAKTIPGKGCGFVQFGTRQSAEAAIQRLNGT 718 NTTIFVG LDPN+TEEEL+Q F QFG++ Y K GKGCGFVQFGTR SAE AIQ++ G Sbjct: 229 NTTIFVGNLDPNITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGK 288 Query: 719 MIGQQTVRLSWGRNMTAKQDQPGAWAQPADPNQWSXXXXXXXXXXXXXXXXXXPDPSLXX 898 +IGQQ VR SWGRN AKQD W Q DPNQWS DPSL Sbjct: 289 IIGQQVVRTSWGRNPAAKQDLT-TWGQQVDPNQWS-AYYGYGGTYDAYGYGVVQDPSLYG 346 Query: 899 XXXXXXXXXXXXXXEGMQEMVAMAGAVPSVEQKEELYDPLATPDVDKLNSAYLAVHGSAM 1078 +G+Q++ +AGAVPSVEQ EE D L TPDVD LN AYL+ H SA+ Sbjct: 347 YGAYSGYASYPQQVDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAI 406 Query: 1079 VGRTLWLKTSALYQQ 1123 +G LWL TS+L +Q Sbjct: 407 LGWPLWLTTSSLVRQ 421 Score = 57.4 bits (137), Expect = 8e-06 Identities = 48/193 (24%), Positives = 77/193 (39%), Gaps = 7/193 (3%) Frame = +2 Query: 191 SIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADEMERNRAMS 370 ++++GDL V + L F A V K++ + TG+ +GYGFV+F R + Sbjct: 21 TLWIGDLQYWVDESYLNSCF-AHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQ 79 Query: 371 EMNGVYCSSRPMRISAATPKKATGFQQPYTAPKVYPTPAFGTAAVQPFPAVDNDITNTTI 550 NG G ++P P+ +I Sbjct: 80 TYNGTQMPGTEQTFRLNWASFGIGERRPDAGPE------------------------HSI 115 Query: 551 FVGGLDPNVTEEELRQIF-AQFGDLVYAKTIP------GKGCGFVQFGTRQSAEAAIQRL 709 FVG L P+VT+ L++ F AQ+ + AK + KG GFV+F A+ + Sbjct: 116 FVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEM 175 Query: 710 NGTMIGQQTVRLS 748 NG + +R+S Sbjct: 176 NGVYCSTRPMRIS 188