BLASTX nr result

ID: Coptis23_contig00010260 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00010260
         (497 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002517034.1| conserved hypothetical protein [Ricinus comm...   106   2e-21
ref|XP_002314658.1| predicted protein [Populus trichocarpa] gi|2...   102   3e-20
ref|NP_567436.1| uncharacterized protein [Arabidopsis thaliana] ...   100   9e-20
ref|XP_002894402.1| hypothetical protein ARALYDRAFT_892302 [Arab...   100   9e-20
ref|XP_003518966.1| PREDICTED: uncharacterized protein LOC100500...   100   2e-19

>ref|XP_002517034.1| conserved hypothetical protein [Ricinus communis]
           gi|223543669|gb|EEF45197.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 76

 Score =  106 bits (264), Expect = 2e-21
 Identities = 47/59 (79%), Positives = 56/59 (94%)
 Frame = +3

Query: 27  MSSLGTSKGLLEIAKFGLYVSVPLVLMYYFANNTKNMKKFMGNRSYVVYPPEALRPPSP 203
           MSSLGTSKG+LEIAKFG+YV+VP++LMY FANNTKN++KFMGN+SY+VYPPE  RPPSP
Sbjct: 1   MSSLGTSKGILEIAKFGVYVTVPIILMYTFANNTKNLQKFMGNKSYIVYPPEGPRPPSP 59


>ref|XP_002314658.1| predicted protein [Populus trichocarpa] gi|222863698|gb|EEF00829.1|
           predicted protein [Populus trichocarpa]
          Length = 76

 Score =  102 bits (254), Expect = 3e-20
 Identities = 46/59 (77%), Positives = 56/59 (94%)
 Frame = +3

Query: 27  MSSLGTSKGLLEIAKFGLYVSVPLVLMYYFANNTKNMKKFMGNRSYVVYPPEALRPPSP 203
           MSSLGTSKG+LEIAKFG+YV+VP+VLMY FANNTKN++KFMGNRSY+V+P + +RPPSP
Sbjct: 1   MSSLGTSKGILEIAKFGVYVTVPVVLMYAFANNTKNLQKFMGNRSYIVFPSKIVRPPSP 59


>ref|NP_567436.1| uncharacterized protein [Arabidopsis thaliana]
           gi|21593737|gb|AAM65704.1| unknown [Arabidopsis
           thaliana] gi|26450874|dbj|BAC42544.1| unknown protein
           [Arabidopsis thaliana] gi|88010872|gb|ABD38866.1|
           At4g14615 [Arabidopsis thaliana]
           gi|332658066|gb|AEE83466.1| uncharacterized protein
           [Arabidopsis thaliana]
          Length = 76

 Score =  100 bits (250), Expect = 9e-20
 Identities = 47/59 (79%), Positives = 54/59 (91%)
 Frame = +3

Query: 27  MSSLGTSKGLLEIAKFGLYVSVPLVLMYYFANNTKNMKKFMGNRSYVVYPPEALRPPSP 203
           MSS+GTSKG+LEI KFG+YV+VP+VLMY FANN+ N+KKFMGNRSYVVYP EA RPPSP
Sbjct: 1   MSSVGTSKGVLEIVKFGVYVAVPIVLMYTFANNSTNIKKFMGNRSYVVYPEEAPRPPSP 59


>ref|XP_002894402.1| hypothetical protein ARALYDRAFT_892302 [Arabidopsis lyrata subsp.
           lyrata] gi|297340244|gb|EFH70661.1| hypothetical protein
           ARALYDRAFT_892302 [Arabidopsis lyrata subsp. lyrata]
          Length = 78

 Score =  100 bits (250), Expect = 9e-20
 Identities = 47/59 (79%), Positives = 54/59 (91%)
 Frame = +3

Query: 27  MSSLGTSKGLLEIAKFGLYVSVPLVLMYYFANNTKNMKKFMGNRSYVVYPPEALRPPSP 203
           MSS+GTSKG+LEIAKFG+YV+VP+VLMY FANN+ N+KKFMGN SYVVYP EA RPPSP
Sbjct: 1   MSSVGTSKGILEIAKFGVYVAVPIVLMYTFANNSTNIKKFMGNHSYVVYPKEAPRPPSP 59


>ref|XP_003518966.1| PREDICTED: uncharacterized protein LOC100500641 [Glycine max]
           gi|255630837|gb|ACU15781.1| unknown [Glycine max]
          Length = 76

 Score = 99.8 bits (247), Expect = 2e-19
 Identities = 44/59 (74%), Positives = 54/59 (91%)
 Frame = +3

Query: 27  MSSLGTSKGLLEIAKFGLYVSVPLVLMYYFANNTKNMKKFMGNRSYVVYPPEALRPPSP 203
           MSSLGTSKG+LEIAKFG+YV+VP++LMY FANN  N++KFMG+RSY+ YPPEA +PPSP
Sbjct: 1   MSSLGTSKGILEIAKFGVYVTVPIILMYTFANNPSNLRKFMGHRSYIEYPPEAEKPPSP 59


Top