BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00010211
         (1167 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, I...   227   4e-57
ref|NP_001238044.1| uncharacterized protein LOC100499667 [Glycin...   220   5e-55
gb|ACF06443.1| DNA-directed RNA polymerases II 24 kDa polypeptid...   220   5e-55
ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|2...   220   6e-55
gb|AFK38034.1| unknown [Lotus japonicus]                              219   1e-54

>ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1 isoform 1 [Vitis vinifera]
           gi|225445172|ref|XP_002284110.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC1 isoform 2
           [Vitis vinifera]
          Length = 206

 Score =  227 bits (579), Expect = 4e-57
 Identities = 125/221 (56%), Positives = 161/221 (72%), Gaps = 1/221 (0%)
 Frame = +3

Query: 27  SGEQDEVSRLFKIRRTVMQMLRDRGYEVDEETDINMSRTQFIEQF-QGGKREDLFIHKTK 203
           S  ++E+SRLF+IR+TVMQML+DRGY V +  +INM++ QF+ +F +  KREDL I+K K
Sbjct: 2   SASEEEISRLFRIRKTVMQMLKDRGYFVGD-FEINMTKHQFVSKFGENMKREDLVINKAK 60

Query: 204 APPDPAKEDYEDRLRDPSSDQIFVFFPDEPKKIGVKIMKACFARMSSENVFRAILVSQKA 383
                         R  SSDQI+VFFP+E +K+GVK MK    RM SENVFRAILV Q+ 
Sbjct: 61  --------------RTDSSDQIYVFFPEE-QKVGVKTMKTYTNRMKSENVFRAILVVQQN 105

Query: 384 LTPPANQAVKEMSSKFHLEAFVDEELVVNINYHCLVPKHNVLSTKEKKALLHKYSLKETQ 563
           LTP A   + E+S+KFHLE F + EL+VNI  H LVP+H VL+++EKK LL +Y++KETQ
Sbjct: 106 LTPFARTCINEISTKFHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQ 165

Query: 564 LPRMKISDPIAKYHGLKCGQVVKITRKSVTAETYDTYRFVV 686
           LPR+++SDPIA+Y GLK GQVVKI R S TA  Y TYR+VV
Sbjct: 166 LPRIQVSDPIARYFGLKRGQVVKIIRPSETAGRYITYRYVV 206


>ref|NP_001238044.1| uncharacterized protein LOC100499667 [Glycine max]
           gi|255625665|gb|ACU13177.1| unknown [Glycine max]
          Length = 206

 Score =  220 bits (561), Expect = 5e-55
 Identities = 121/218 (55%), Positives = 159/218 (72%), Gaps = 1/218 (0%)
 Frame = +3

Query: 36  QDEVSRLFKIRRTVMQMLRDRGYEVDEETDINMSRTQFIEQF-QGGKREDLFIHKTKAPP 212
           ++E+ RL++IR+TVMQMLRDRG+ V +  +INMS+ +F  ++ +  KREDL I+K+K   
Sbjct: 5   EEEMGRLYRIRKTVMQMLRDRGFLVGD-FEINMSKHEFKSKYGEHMKREDLVINKSK--- 60

Query: 213 DPAKEDYEDRLRDPSSDQIFVFFPDEPKKIGVKIMKACFARMSSENVFRAILVSQKALTP 392
                      +D S DQI+VFFPDEPK +GVK MK    RM+SENV+RAILV+Q  LTP
Sbjct: 61  -----------KDNSGDQIYVFFPDEPK-VGVKTMKTYTNRMNSENVYRAILVTQTNLTP 108

Query: 393 PANQAVKEMSSKFHLEAFVDEELVVNINYHCLVPKHNVLSTKEKKALLHKYSLKETQLPR 572
            A   + E+SSKFHLE F + EL+VNI  H LVP+H VL+  EKK LL +Y++KETQLPR
Sbjct: 109 FARTCISEISSKFHLEVFQEAELLVNIKEHELVPEHQVLTDAEKKTLLERYTVKETQLPR 168

Query: 573 MKISDPIAKYHGLKCGQVVKITRKSVTAETYDTYRFVV 686
           ++++DP+A+Y+GLK GQVVKI R S TA  Y TYRFVV
Sbjct: 169 IQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFVV 206


>gb|ACF06443.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Elaeis
           guineensis]
          Length = 204

 Score =  220 bits (561), Expect = 5e-55
 Identities = 124/218 (56%), Positives = 161/218 (73%), Gaps = 1/218 (0%)
 Frame = +3

Query: 36  QDEVSRLFKIRRTVMQMLRDRGYEVDEETDINMSRTQFIEQF-QGGKREDLFIHKTKAPP 212
           +D++SRLF+IRRTVMQMLRDRGY V  + +INM++ QF+E+F +G KREDL I+K K   
Sbjct: 3   EDDISRLFRIRRTVMQMLRDRGYLV-LDLEINMNKLQFLEKFGEGVKREDLVINKAKKN- 60

Query: 213 DPAKEDYEDRLRDPSSDQIFVFFPDEPKKIGVKIMKACFARMSSENVFRAILVSQKALTP 392
           DPA             DQI+VFFP++ K +GVK +K    RM +ENV R ILV Q+ALTP
Sbjct: 61  DPA-------------DQIYVFFPNDAK-VGVKQIKQYVERMKAENVTRGILVVQQALTP 106

Query: 393 PANQAVKEMSSKFHLEAFVDEELVVNINYHCLVPKHNVLSTKEKKALLHKYSLKETQLPR 572
            A Q++ E+S K+ LE F D EL+VNI  H LVP+H VL+++EKK LL +Y+LKETQLPR
Sbjct: 107 FARQSLAEVSQKYMLEVFQDTELLVNIKEHVLVPEHQVLTSEEKKTLLERYTLKETQLPR 166

Query: 573 MKISDPIAKYHGLKCGQVVKITRKSVTAETYDTYRFVV 686
           ++++DPIA+Y+GLK GQVVKI R S TA  Y TYR+VV
Sbjct: 167 IQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 204


>ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|222873254|gb|EEF10385.1|
           predicted protein [Populus trichocarpa]
          Length = 206

 Score =  220 bits (560), Expect = 6e-55
 Identities = 122/218 (55%), Positives = 156/218 (71%), Gaps = 1/218 (0%)
 Frame = +3

Query: 36  QDEVSRLFKIRRTVMQMLRDRGYEVDEETDINMSRTQFIEQFQGG-KREDLFIHKTKAPP 212
           ++E+ RL +IR+TVMQML+DRGY V +  +I M+R QF  ++    KREDL I+KTK   
Sbjct: 5   EEEIKRLLRIRKTVMQMLKDRGYFVGD-FEIKMTREQFESKYGNNMKREDLVINKTK--- 60

Query: 213 DPAKEDYEDRLRDPSSDQIFVFFPDEPKKIGVKIMKACFARMSSENVFRAILVSQKALTP 392
                      R+ SSDQI+VFFP+E K +GVK MK    RM SENVFRAILV Q+ LTP
Sbjct: 61  -----------RNDSSDQIYVFFPEEAK-VGVKTMKTYTNRMKSENVFRAILVVQQNLTP 108

Query: 393 PANQAVKEMSSKFHLEAFVDEELVVNINYHCLVPKHNVLSTKEKKALLHKYSLKETQLPR 572
            A   + E+S+KFHLE F + EL+VNI  H LVP+H VLS +EKK LL +Y++KETQLPR
Sbjct: 109 FARTCINEISTKFHLEVFQEAELLVNIKEHVLVPEHQVLSNEEKKTLLERYTVKETQLPR 168

Query: 573 MKISDPIAKYHGLKCGQVVKITRKSVTAETYDTYRFVV 686
           ++I+DPIA+Y+GLK GQVVKI R S TA  Y TYR+V+
Sbjct: 169 IQITDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVI 206


>gb|AFK38034.1| unknown [Lotus japonicus]
          Length = 206

 Score =  219 bits (557), Expect = 1e-54
 Identities = 122/218 (55%), Positives = 155/218 (71%), Gaps = 1/218 (0%)
 Frame = +3

Query: 36  QDEVSRLFKIRRTVMQMLRDRGYEVDEETDINMSRTQFIEQFQGG-KREDLFIHKTKAPP 212
           ++++++L +IR+TVMQMLRDR Y V +  +INMSR +F  ++    KREDL I+KTK   
Sbjct: 5   EEDITKLHRIRKTVMQMLRDRNYLVGD-FEINMSRHEFKTKYGDNMKREDLTINKTK--- 60

Query: 213 DPAKEDYEDRLRDPSSDQIFVFFPDEPKKIGVKIMKACFARMSSENVFRAILVSQKALTP 392
                      +D  SDQI+VFFPDEPK +GVK MK    RM+SENVFRAILV Q  LTP
Sbjct: 61  -----------KDGPSDQIYVFFPDEPK-VGVKTMKTYTNRMNSENVFRAILVCQSNLTP 108

Query: 393 PANQAVKEMSSKFHLEAFVDEELVVNINYHCLVPKHNVLSTKEKKALLHKYSLKETQLPR 572
            A   + EMSSKF LE F + EL+VNI  H LVP+H +L+  EKK LL +Y++KETQLPR
Sbjct: 109 FAKTCISEMSSKFQLEVFQEAELLVNIKEHVLVPEHQILNETEKKTLLERYTVKETQLPR 168

Query: 573 MKISDPIAKYHGLKCGQVVKITRKSVTAETYDTYRFVV 686
           ++I+DP+A+Y+GLK GQVVKI R S TA  Y TYRFVV
Sbjct: 169 IQITDPVARYYGLKRGQVVKIIRPSETAGRYITYRFVV 206