BLASTX nr result

ID: Coptis23_contig00010148 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00010148
         (276 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002525811.1| LysM domain GPI-anchored protein 2 precursor...    67   1e-09
ref|XP_002278742.1| PREDICTED: lysM domain-containing GPI-anchor...    64   2e-08
emb|CAN68930.1| hypothetical protein VITISV_040617 [Vitis vinifera]    62   5e-08
ref|XP_002313676.1| predicted protein [Populus trichocarpa] gi|2...    59   3e-07
dbj|BAE71282.1| putative receptor-like GPI-anchored protein 2 [T...    57   1e-06

>ref|XP_002525811.1| LysM domain GPI-anchored protein 2 precursor, putative [Ricinus
           communis] gi|223534898|gb|EEF36585.1| LysM domain
           GPI-anchored protein 2 precursor, putative [Ricinus
           communis]
          Length = 361

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 39/84 (46%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
 Frame = +2

Query: 2   NNMTLQCEPSPKEVKLAKWSQCPSTQCKLVSPVTLTLGNTLN-GC-VQACAYAGYYNQTI 175
           NN  LQCEPS   +  + WS CP  +C       L++GN+ N GC    CAYAG+ NQTI
Sbjct: 256 NNWILQCEPSGLTIANSTWSTCPPMKCDGAD--NLSIGNSTNAGCNTTTCAYAGFSNQTI 313

Query: 176 LTTPMTVSGCQTGGAGQPSGNDAS 247
           LT   TVS C     G  S N AS
Sbjct: 314 LTALATVSTCPASTPGSGSDNYAS 337


>ref|XP_002278742.1| PREDICTED: lysM domain-containing GPI-anchored protein 2 [Vitis
           vinifera] gi|297744534|emb|CBI37796.3| unnamed protein
           product [Vitis vinifera]
          Length = 357

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 42/93 (45%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
 Frame = +2

Query: 2   NNMTLQCEPSPKEVKLAKWSQCPSTQCKLVSPVTLTLGNTLN-GCVQA-CAYAGYYNQTI 175
           NN TLQCEPS  ++KL+  + CPS QC+  S   L +GN+ + GC +  CAYAGY +Q I
Sbjct: 257 NNWTLQCEPS--QLKLSNRT-CPSMQCEGSS---LYIGNSTSAGCNRTTCAYAGYTSQMI 310

Query: 176 LTTPMTVSGCQTGGAGQPSGNDASKISLRGWCW 274
           LTT +  + C        + NDA KI L+ W W
Sbjct: 311 LTTLVEGNACS-------ASNDAQKIGLQVWSW 336


>emb|CAN68930.1| hypothetical protein VITISV_040617 [Vitis vinifera]
          Length = 414

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 42/93 (45%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
 Frame = +2

Query: 2   NNMTLQCEPSPKEVKLAKWSQCPSTQCKLVSPVTLTLGNTLN-GCVQA-CAYAGYYNQTI 175
           NN TLQCEPS  ++KL+  + CPS QC+  S   L +GN+ + GC Q  CAY GY +Q I
Sbjct: 246 NNWTLQCEPS--QLKLSNRT-CPSMQCEGSS---LYIGNSTSAGCNQTTCAYXGYTSQMI 299

Query: 176 LTTPMTVSGCQTGGAGQPSGNDASKISLRGWCW 274
           LTT +  + C        + NDA KI L+ W W
Sbjct: 300 LTTLVEENTCS-------ARNDAQKIGLQVWSW 325


>ref|XP_002313676.1| predicted protein [Populus trichocarpa] gi|222850084|gb|EEE87631.1|
           predicted protein [Populus trichocarpa]
          Length = 351

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 38/88 (43%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
 Frame = +2

Query: 2   NNMTLQCEPSPKEVKLAKWSQCPSTQCKLVSPVTLTLGN-TLNGC-VQACAYAGYYNQTI 175
           NN TLQCEPS K  K + WS CP+ QC+      LT+GN T +GC    CAYAG+     
Sbjct: 253 NNWTLQCEPSGK--KPSSWSACPAMQCE---GGLLTIGNTTTSGCNTTTCAYAGFSGDQN 307

Query: 176 LTTPMTVSGCQTGGAGQPSGNDASKISL 259
           + T +       GG+    GN AS+I L
Sbjct: 308 IFTALATQSTSPGGS---PGNFASRIGL 332


>dbj|BAE71282.1| putative receptor-like GPI-anchored protein 2 [Trifolium pratense]
          Length = 365

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
 Frame = +2

Query: 2   NNMTLQCEPSPKEVKLAKWSQCPSTQCKLVSPVTLTLGNT--LNGCVQ-ACAYAGYYNQT 172
           NN  LQCEPS  +  +  WS CPS +C      ++ +GNT   + C +  C Y+GY +  
Sbjct: 258 NNFMLQCEPS-NQKPINNWSVCPSARCS----ASVLIGNTTSTDSCNRTVCDYSGYTSSN 312

Query: 173 ILTTPMTVSGC----QTGGAGQPSGNDASKISLRGWCW 274
           I T  +T + C     +GG    SG  AS+  L GW W
Sbjct: 313 ISTVLVTQNACAVTPSSGGGDSDSG--ASRSILNGWVW 348


Top