BLASTX nr result
ID: Coptis23_contig00010115
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00010115
(1944 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002331320.1| f-box family protein [Populus trichocarpa] g... 132 4e-28
ref|XP_002331319.1| f-box family protein [Populus trichocarpa] g... 130 2e-27
ref|XP_002331322.1| predicted protein [Populus trichocarpa] gi|2... 125 5e-26
ref|XP_002331321.1| predicted protein [Populus trichocarpa] gi|2... 124 7e-26
emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera] 123 2e-25
>ref|XP_002331320.1| f-box family protein [Populus trichocarpa]
gi|222873903|gb|EEF11034.1| f-box family protein [Populus
trichocarpa]
Length = 453
Score = 132 bits (331), Expect = 4e-28
Identities = 106/343 (30%), Positives = 167/343 (48%), Gaps = 29/343 (8%)
Frame = -2
Query: 1544 DRISSLPEEVLHHILSFLDMSQIIQTSLLSKRWRYIWVSLPYLNFNDLAWKS-------S 1386
DRIS+LP +LHHILSF+D Q++QT +LSKRW +W S PYL+FN + S
Sbjct: 35 DRISTLPNVLLHHILSFVDAVQVVQTCVLSKRWMNVWKSHPYLDFNFETFSSLINSDYYD 94
Query: 1385 GESKCFIDFVHNVLLYRDNSPVYKFCLDCFICDRDRSEDRICSMVIAAVRKNTQEVHVNI 1206
+ F DF+++VL+ R+N +K LD RD + S++ AV+ + +E+ +N
Sbjct: 95 DDMNNFTDFIYHVLVRRNNVKAFKLSLD---TRRDCQYSVVESLIYYAVKHHVEEISINT 151
Query: 1205 RQQEI-VELPHSVFVSE-IRVFTLHTDFPVQLPNSVGTAAHLKTLKLVSAKLPKGDLNGE 1032
++ + LP F E +R L D + LP S+G + LKTL L A+ + +G+
Sbjct: 152 AHWDVPIVLPRCFFDCESLRSLKLKVDGGLALPKSLGLQS-LKTLHLGGAQ----NFDGK 206
Query: 1031 LVLSCPVLETLLLHNCESKHLNVFTISAFVLKNL-VVNHSYFPEASPCKIKICTPNLSAL 855
+ SCP LE L + + + F I A LK+L ++N Y CK+ + P L++
Sbjct: 207 IFSSCPNLENLTIEDICLNVIENFNIHALSLKSLEILNWRYNRIKQGCKVMLVAPKLTSF 266
Query: 854 RLECDMYKDYSLEKLSSL--VSAKLQ-----------------FSLSLEGNAQRVCRILE 732
+ + + +S L+SL V+ LQ S E +++
Sbjct: 267 KFDGNTPLFWSDVNLTSLDDVNVVLQRYHHSHNYPFYVVEDEYISEEDETEQGLGLNLIK 326
Query: 731 GLYSVTTLTWTTDSGHWLKAFLASPGVLDRLHKPFHNLKYLML 603
L+ + T S + ++ P LD+ PF NLKYL L
Sbjct: 327 MLHQFCSAKSLTLSMNIIEILSEVPAALDKHPSPFSNLKYLKL 369
>ref|XP_002331319.1| f-box family protein [Populus trichocarpa]
gi|222873902|gb|EEF11033.1| f-box family protein [Populus
trichocarpa]
Length = 453
Score = 130 bits (326), Expect = 2e-27
Identities = 107/343 (31%), Positives = 167/343 (48%), Gaps = 29/343 (8%)
Frame = -2
Query: 1544 DRISSLPEEVLHHILSFLDMSQIIQTSLLSKRWRYIWVSLPYLNFNDLAWKS-------S 1386
DRIS+LP +LHHILSF+D Q++QT +LSKRW +W S PYL+FN + S
Sbjct: 35 DRISTLPNVLLHHILSFVDAVQVVQTCVLSKRWMNVWKSHPYLDFNFETFSSLINSDYYD 94
Query: 1385 GESKCFIDFVHNVLLYRDNSPVYKFCLDCFICDRDRSEDRICSMVIAAVRKNTQEVHVNI 1206
E F DF+++VL+ R N K LD RD + S++ AV+ + +E+ VN
Sbjct: 95 DEVNNFTDFIYHVLVRRHNLKAVKISLDIL---RDTRCSLVESLIYYAVKHHVEEISVNT 151
Query: 1205 RQQEI-VELPHSVFVSE-IRVFTLHTDFPVQLPNSVGTAAHLKTLKLVSAKLPKGDLNGE 1032
++ + LP F E +R L D + LP S+G + LKTL L A+ + +G+
Sbjct: 152 AHWDMPIVLPRCFFDCESLRSLKLKVDGGIALPKSLGLQS-LKTLHLGGAR----NFDGK 206
Query: 1031 LVLSCPVLETLLLHNCESKHLNVFTISAFVLKNL-VVNHSYFPEASPCKIKICTPNLSAL 855
+ +CP LE L + + + F I A LK+L ++N Y CK+ + P L++
Sbjct: 207 IFSTCPNLENLKIEDIYLNTIENFNIHALNLKSLEILNWRYGRIMRGCKVMLFAPKLTSF 266
Query: 854 RLECDMYKDYSLEKLSSL-----VSAKLQFS------------LSLEGNAQR--VCRILE 732
+ + +S L+SL V + Q S +S E ++ +++
Sbjct: 267 KFYGNTPLFWSEVNLTSLDDVNVVLQRYQHSHNYPFYVVEDEYISEEDETEQGLGLNLIK 326
Query: 731 GLYSVTTLTWTTDSGHWLKAFLASPGVLDRLHKPFHNLKYLML 603
L+ + T S + ++ P LD+ PF NLKYL L
Sbjct: 327 MLHQFCSAKSLTLSMNIIEILSEVPAALDKHPSPFSNLKYLKL 369
>ref|XP_002331322.1| predicted protein [Populus trichocarpa] gi|222873905|gb|EEF11036.1|
predicted protein [Populus trichocarpa]
Length = 335
Score = 125 bits (313), Expect = 5e-26
Identities = 88/258 (34%), Positives = 136/258 (52%), Gaps = 10/258 (3%)
Frame = -2
Query: 1544 DRISSLPEEVLHHILSFLDMSQIIQTSLLSKRWRYIWVSLPYLNFNDLAWKS-------S 1386
DRIS+LP +LHHILSFLD Q++QT +LSKRW +W S PYL+FN + S
Sbjct: 16 DRISTLPNVLLHHILSFLDAVQVVQTCVLSKRWMNVWKSHPYLDFNFETFSSLISSYYYD 75
Query: 1385 GESKCFIDFVHNVLLYRDNSPVYKFCLDCFICDRDRSEDRICSMVIAAVRKNTQEVHVNI 1206
+ F DF+ +VL+ R+N +K LD RD + S++ AV+ + +E+ +N
Sbjct: 76 DDMNNFTDFISHVLVRRNNVKAFKLSLD---TRRDCQYSVVESLIYYAVKHHVEEISINT 132
Query: 1205 RQQEI-VELPHSVFVSE-IRVFTLHTDFPVQLPNSVGTAAHLKTLKLVSAKLPKGDLNGE 1032
++ + LP F E +R L D + LP S+G + LKTL L A+ + +G+
Sbjct: 133 AHWDVPIVLPRCFFDCESLRSLKLKVDGGLALPKSLGLQS-LKTLHLGGAQ----NFDGK 187
Query: 1031 LVLSCPVLETLLLHNCESKHLNVFTISAFVLKNL-VVNHSYFPEASPCKIKICTPNLSAL 855
+ SCP LE L + + + F I A LK+L ++N Y CK+ + P L++
Sbjct: 188 IFSSCPNLENLTIEDICLNVIENFNIHALSLKSLEILNWRYNRIKQGCKVMLVAPKLTSF 247
Query: 854 RLECDMYKDYSLEKLSSL 801
+ + +S L+SL
Sbjct: 248 KFYGNTPLFWSEVNLTSL 265
>ref|XP_002331321.1| predicted protein [Populus trichocarpa] gi|222873904|gb|EEF11035.1|
predicted protein [Populus trichocarpa]
Length = 378
Score = 124 bits (312), Expect = 7e-26
Identities = 105/343 (30%), Positives = 168/343 (48%), Gaps = 29/343 (8%)
Frame = -2
Query: 1544 DRISSLPEEVLHHILSFLDMSQIIQTSLLSKRWRYIWVSLPYLNFNDLAWKS-------S 1386
DRIS+LP +LH ILSF+D Q++QT +LSKRW +W S PYL+FN + S
Sbjct: 16 DRISTLPNVLLHRILSFVDAVQVVQTCVLSKRWMNVWKSHPYLDFNFETFSSLINSDYYE 75
Query: 1385 GESKCFIDFVHNVLLYRDNSPVYKFCLDCFICDRDRSEDRICSMVIAAVRKNTQEVHVNI 1206
E F DF++ VL+ R+N K LD +C R + S++ AV+ + +E+ ++
Sbjct: 76 DEMVNFTDFINQVLVRRNNFKAIKISLD--LCGHTR-YSLVESLIYYAVKHHAEEICIDT 132
Query: 1205 RQQEI-VELPHSVFVSE-IRVFTLHTDFPVQLPNSVGTAAHLKTLKLVSAKLPKGDLNGE 1032
+++ + LP F E +R L D + LP S+G + LKTL L A+ + +G+
Sbjct: 133 ACRDVPIVLPRCFFNCESLRSLKLRIDGGIALPKSLGLPS-LKTLHLGGAQ----NFDGK 187
Query: 1031 LVLSCPVLETLLLHNCESKHLNVFTISAFVLKNL-VVNHSYFPEASPCKIKICTPNLSAL 855
+ SCP LE L + + + F I A LK+L ++N Y CK+ + P L++
Sbjct: 188 IFSSCPNLENLTIEDICLNTIENFNIHALNLKSLEILNWRYSRIMRGCKVMLFAPKLTSF 247
Query: 854 RLECDMYKDYSLEKLSSL--VSAKLQ----------------FSLSLEGNAQRVC-RILE 732
+ + + +S L+SL V+ LQ + + Q C +L+
Sbjct: 248 KFDGNTPLFWSEVNLTSLDDVNVVLQRYYYRHDYQFYVDEDEYISGEDETKQGFCLDLLK 307
Query: 731 GLYSVTTLTWTTDSGHWLKAFLASPGVLDRLHKPFHNLKYLML 603
L+ + T S + ++ P L++ PF NLKYL L
Sbjct: 308 MLHQFCSAKSLTLSMNIIEVLSKVPAALNKHPSPFSNLKYLKL 350
>emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera]
Length = 607
Score = 123 bits (309), Expect = 2e-25
Identities = 122/423 (28%), Positives = 189/423 (44%), Gaps = 26/423 (6%)
Frame = -2
Query: 1544 DRISSLPEEVLHHILSFLDMSQIIQTSLLSKRWRYIWVSLPYLNFNDLAWKSSG-----E 1380
D IS+LP+E+L HILSFL + TS+LSKRWRY+W S+P L+F+D W + E
Sbjct: 10 DIISNLPDELLCHILSFLPTKFAVGTSILSKRWRYLWASVPILDFDDELWLNPSTLVELE 69
Query: 1379 SK--CFIDFVHNVLLYRDNSPVYKFCLDCFICDRDRSEDRICSMVIAAVRKNTQEVHVNI 1206
+ F +FV VL + + S + KF L RD + D + S + A+ + QE+ +++
Sbjct: 70 ERIIMFQNFVDGVLRHSEVSCIKKFRLGY----RDNNLDSVYSWICIALERRVQELDLHL 125
Query: 1205 RQQEIVELPHSVFVSE-IRVFTLHTDFPVQLPNSVGTAAHLKTLKLVSAKLPKGDLNGEL 1029
VELP F+ + + V L + +P +V + LK L L S + D +L
Sbjct: 126 LIDWRVELPPMFFICKTLVVVKLSCALFLDIPTTVWLPS-LKALHLKSVEYSDDDSIQKL 184
Query: 1028 VLSCPVLETLLLHNCESKHLNVFTISAFVLKNLVV-------NHSYFPEASPCKIKICTP 870
+ CPVLE L++ E + V +S LK L + H Y E K+ + P
Sbjct: 185 LSGCPVLEELVIEREERDNQWVVNVSNPSLKILRIFFFTDGFAHPYEQEDQDYKVVVDAP 244
Query: 869 NLSALRLECDMYKDYSLEKLSSLVSAKLQFSLSLE--------GNAQRVCRILEGLYSVT 714
NL L + + KDY ++ L SLV A + E G I E L ++
Sbjct: 245 NLEYLSITDYLSKDYFVKDLPSLVKAFIDVEQDSEEFEESPHNGGISYHGPIYELLGRIS 304
Query: 713 TLTWTTDSGHWLKAFLASPGVLDRLHKPFHNLKYLMLCKYNAFYLNEVVRFLGFFPYLKT 534
+ + +G L + + G D FHN+ L F + + FL P L+
Sbjct: 305 NVKCLSLTGVTLDSLSGTIG--DYKLPTFHNMTRLEFLFIGGFNWDFLPNFLHSSPNLEA 362
Query: 533 LSLQMAQGQYRSGNDEQFSL---ACILHQLRYVEIHNLQGCXXXXXXXXXXXKNAMALKK 363
L ++ L AC++ L+ +EI + G KNA L++
Sbjct: 363 LVIETGYTNELIPEGWLMPLQVPACLVLHLKEIEIRRIVGEDYELEAVEYLLKNAEVLQQ 422
Query: 362 ITI 354
+TI
Sbjct: 423 MTI 425