BLASTX nr result

ID: Coptis23_contig00010044 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00010044
         (473 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN79213.1| hypothetical protein VITISV_025939 [Vitis vinifera]   140   1e-31
ref|XP_004138695.1| PREDICTED: U2 snRNP-associated SURP motif-co...   133   1e-29
emb|CBI21155.3| unnamed protein product [Vitis vinifera]              131   7e-29
ref|XP_002308714.1| predicted protein [Populus trichocarpa] gi|2...   127   7e-28
ref|XP_002324341.1| predicted protein [Populus trichocarpa] gi|2...   125   3e-27

>emb|CAN79213.1| hypothetical protein VITISV_025939 [Vitis vinifera]
          Length = 1384

 Score =  140 bits (353), Expect = 1e-31
 Identities = 74/125 (59%), Positives = 82/125 (65%), Gaps = 1/125 (0%)
 Frame = +3

Query: 102  SGWKRNGVDAKGLQGKSSASLAPTLPIPQPELKAFTSKGKSDPVLPVSKWAREDDGSDEE 281
            SGW R G D    QGK S  LAPT+PIPQPELKAFT+KGK+DPVLP SKWAREDD SD+E
Sbjct: 875  SGWNRYGEDEIQSQGKGSVPLAPTIPIPQPELKAFTNKGKTDPVLPASKWAREDDDSDDE 934

Query: 282  NKRXXXXXXXXXXXXXXXXXXXXPNKGDDVEVTTEVGTLSQPDSG-MNEEQRQKLRRLEV 458
             KR                    P K D++E  TE    SQPDSG MNEE RQKLRRLEV
Sbjct: 935  QKRSARGLGLSYSSSGSENAGDGPXKADEMEFATESSIPSQPDSGMMNEEHRQKLRRLEV 994

Query: 459  AVMEY 473
            A++EY
Sbjct: 995  ALIEY 999


>ref|XP_004138695.1| PREDICTED: U2 snRNP-associated SURP motif-containing protein-like
            [Cucumis sativus] gi|449493301|ref|XP_004159248.1|
            PREDICTED: U2 snRNP-associated SURP motif-containing
            protein-like [Cucumis sativus]
          Length = 961

 Score =  133 bits (335), Expect = 1e-29
 Identities = 68/128 (53%), Positives = 79/128 (61%)
 Frame = +3

Query: 90   PLMSSGWKRNGVDAKGLQGKSSASLAPTLPIPQPELKAFTSKGKSDPVLPVSKWAREDDG 269
            P  +SGW R G D    Q   S  LA TL IPQPELK F   GK+DPVLP SKWAREDD 
Sbjct: 708  PAETSGWSRFGDDEADFQRMGSVPLAQTLSIPQPELKGFIKSGKNDPVLPASKWAREDDE 767

Query: 270  SDEENKRXXXXXXXXXXXXXXXXXXXXPNKGDDVEVTTEVGTLSQPDSGMNEEQRQKLRR 449
            SD E K                     P+K D++E+TTE+  L QPDSG+NEEQRQKLRR
Sbjct: 768  SDSEQKGGTRGLGLSYSSSGSENAGDGPSKADEMEITTELSALMQPDSGLNEEQRQKLRR 827

Query: 450  LEVAVMEY 473
            +EVA++EY
Sbjct: 828  VEVALIEY 835


>emb|CBI21155.3| unnamed protein product [Vitis vinifera]
          Length = 941

 Score =  131 bits (329), Expect = 7e-29
 Identities = 68/112 (60%), Positives = 77/112 (68%), Gaps = 1/112 (0%)
 Frame = +3

Query: 141  QGKSSASLAPTLPIPQPELKAFTSKGKSDPVLPVSKWAREDDGSDEENKRXXXXXXXXXX 320
            QGK S  LAPT+PIPQPELKAFT+KGK+DPVLP SKWAREDD SD+E KR          
Sbjct: 705  QGKGSVPLAPTIPIPQPELKAFTNKGKTDPVLPASKWAREDDDSDDEQKRSARGLGLSYS 764

Query: 321  XXXXXXXXXXPNKGDDVEVTTEVGTLSQPDSG-MNEEQRQKLRRLEVAVMEY 473
                      P+K D++E  TE    SQPDSG MNEE RQKLRRLEVA++EY
Sbjct: 765  SSGSENAGDGPSKADEMEFATESSIPSQPDSGMMNEEHRQKLRRLEVALIEY 816


>ref|XP_002308714.1| predicted protein [Populus trichocarpa] gi|222854690|gb|EEE92237.1|
            predicted protein [Populus trichocarpa]
          Length = 988

 Score =  127 bits (320), Expect = 7e-28
 Identities = 68/136 (50%), Positives = 81/136 (59%)
 Frame = +3

Query: 66   RDANHGIEPLMSSGWKRNGVDAKGLQGKSSASLAPTLPIPQPELKAFTSKGKSDPVLPVS 245
            R+ N    P+  +GW   G D    Q K S SL  TLPIPQPELKAF  K K+DPVLP S
Sbjct: 713  REVNVDPGPVGLTGWNIYGEDDTPSQNKRSVSLVSTLPIPQPELKAFAKKEKNDPVLPAS 772

Query: 246  KWAREDDGSDEENKRXXXXXXXXXXXXXXXXXXXXPNKGDDVEVTTEVGTLSQPDSGMNE 425
            KWAR+DD SD+E KR                      K D++E  T+    +QP+SGMNE
Sbjct: 773  KWARDDDESDDEQKRSVRDLGLSYSSSGSENAGDGQGKEDEMEFATDASIPTQPESGMNE 832

Query: 426  EQRQKLRRLEVAVMEY 473
            EQRQKLRRLEVA++EY
Sbjct: 833  EQRQKLRRLEVALIEY 848


>ref|XP_002324341.1| predicted protein [Populus trichocarpa] gi|222865775|gb|EEF02906.1|
            predicted protein [Populus trichocarpa]
          Length = 955

 Score =  125 bits (315), Expect = 3e-27
 Identities = 67/134 (50%), Positives = 80/134 (59%)
 Frame = +3

Query: 72   ANHGIEPLMSSGWKRNGVDAKGLQGKSSASLAPTLPIPQPELKAFTSKGKSDPVLPVSKW 251
            A    +P+ S+GW   G D    Q K S S+A TL I QPELKAF  K K+DPVLP SKW
Sbjct: 689  AQSNSKPVGSTGWNVYGEDEMPSQNKGSVSVASTLLIKQPELKAFAKKEKNDPVLPASKW 748

Query: 252  AREDDGSDEENKRXXXXXXXXXXXXXXXXXXXXPNKGDDVEVTTEVGTLSQPDSGMNEEQ 431
            AR+DD SD+E KR                      K D++E  T+    +QPDSGMNEEQ
Sbjct: 749  ARDDDESDDEQKRSARDLGLSYSSSGSENAGDGQGKADEMEFATDANIPTQPDSGMNEEQ 808

Query: 432  RQKLRRLEVAVMEY 473
            RQKLRRLEVA++EY
Sbjct: 809  RQKLRRLEVALIEY 822


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