BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00010041
         (771 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002526000.1| cleavage and polyadenylation specificity fac...   123   4e-26
ref|XP_003529221.1| PREDICTED: E3 ubiquitin protein ligase RIE1-...   119   5e-25
ref|XP_002312464.1| predicted protein [Populus trichocarpa] gi|2...   115   1e-23
gb|ABK96450.1| unknown [Populus trichocarpa x Populus deltoides]      115   1e-23
gb|AEW07558.1| Pinus taeda anonymous locus 0_5075_01 genomic seq...   115   1e-23

>ref|XP_002526000.1| cleavage and polyadenylation specificity factor, putative [Ricinus
           communis] gi|223534732|gb|EEF36424.1| cleavage and
           polyadenylation specificity factor, putative [Ricinus
           communis]
          Length = 963

 Score =  123 bits (309), Expect = 4e-26
 Identities = 61/103 (59%), Positives = 71/103 (68%)
 Frame = -2

Query: 701 SEEGVPLLRPRDVRPXXXXXXXXXXXXXXXXGPSNMVRETAAVQLEERRADWGYSKPVVA 522
           SE   PLL PR   P                GPS +VRETAA++LEERRADWGYSKPVVA
Sbjct: 609 SESHAPLLHPRQEAPRAASLAMLLGRVTGRRGPSMLVRETAALELEERRADWGYSKPVVA 668

Query: 521 LDIAWNLAFTVVSIVMLSSTLGERPNTPIRVWIGGYALQCVIH 393
           LD+ WN AF VVSI ML  ++ E+PNTPIR+WI GYALQC++H
Sbjct: 669 LDMVWNTAFVVVSITMLILSVKEKPNTPIRIWICGYALQCLVH 711



 Score = 92.0 bits (227), Expect = 1e-16
 Identities = 42/65 (64%), Positives = 45/65 (69%)
 Frame = -2

Query: 197 TGNRSSIAKRCESINTMASFFWWIVGFYWIVSGGDILLHNAPRLYWLXXXXXXXXXXXXX 18
           T NRSS+ KRCES+NTMASF WWIVGFYW+VSGGD LL NAP LYWL             
Sbjct: 768 TSNRSSVIKRCESVNTMASFLWWIVGFYWVVSGGDELLQNAPHLYWLAVVFLAFDVFFAI 827

Query: 17  FCVAL 3
           FCV L
Sbjct: 828 FCVVL 832


>ref|XP_003529221.1| PREDICTED: E3 ubiquitin protein ligase RIE1-like [Glycine max]
          Length = 352

 Score =  119 bits (299), Expect = 5e-25
 Identities = 62/103 (60%), Positives = 71/103 (68%), Gaps = 1/103 (0%)
 Frame = -2

Query: 698 EEGVPLLRP-RDVRPXXXXXXXXXXXXXXXXGPSNMVRETAAVQLEERRADWGYSKPVVA 522
           E   PLLRP  D                   GPS +VRETAA +LEERRADWGYSKPVVA
Sbjct: 13  ESHAPLLRPLTDASRAPVPTLALLLGRAGRRGPSMLVRETAARELEERRADWGYSKPVVA 72

Query: 521 LDIAWNLAFTVVSIVMLSSTLGERPNTPIRVWIGGYALQCVIH 393
           LD++WN+AF VV+ VML+ T  ERPNTPIRVWI GYALQC++H
Sbjct: 73  LDMSWNMAFVVVTAVMLACTTAERPNTPIRVWIVGYALQCLVH 115



 Score = 77.0 bits (188), Expect = 4e-12
 Identities = 35/60 (58%), Positives = 39/60 (65%)
 Frame = -2

Query: 182 SIAKRCESINTMASFFWWIVGFYWIVSGGDILLHNAPRLYWLXXXXXXXXXXXXXFCVAL 3
           S  KRCE +NT  SF WWIVGFYW+VSGG+ILL +APRLYWL             FCV L
Sbjct: 162 SFTKRCELLNTGVSFLWWIVGFYWVVSGGNILLQDAPRLYWLVVVFLAFDVFFAIFCVVL 221


>ref|XP_002312464.1| predicted protein [Populus trichocarpa] gi|222852284|gb|EEE89831.1|
           predicted protein [Populus trichocarpa]
          Length = 351

 Score =  115 bits (288), Expect = 1e-23
 Identities = 60/111 (54%), Positives = 71/111 (63%), Gaps = 5/111 (4%)
 Frame = -2

Query: 710 SIGSEEGVPLLRPRDVRPXXXXXXXXXXXXXXXXG-----PSNMVRETAAVQLEERRADW 546
           S  +E   PLLRPR   P                      PS +VRETAA +L+ERRADW
Sbjct: 2   STENEPHAPLLRPRQDPPTSPTSRQTTLSALLGRATGRRGPSMLVRETAARELDERRADW 61

Query: 545 GYSKPVVALDIAWNLAFTVVSIVMLSSTLGERPNTPIRVWIGGYALQCVIH 393
           GYSKPVV+LD+ WN AF VVS+ ML  T+ ERPNTPIR+WI GYALQC++H
Sbjct: 62  GYSKPVVSLDMMWNAAFVVVSVTMLLVTVKERPNTPIRIWICGYALQCLVH 112



 Score = 87.8 bits (216), Expect = 2e-15
 Identities = 38/62 (61%), Positives = 43/62 (69%)
 Frame = -2

Query: 188 RSSIAKRCESINTMASFFWWIVGFYWIVSGGDILLHNAPRLYWLXXXXXXXXXXXXXFCV 9
           RSS+ KRCES+NTM SF WW+VGFYW+VSGGD+LL NAP LYWL             FCV
Sbjct: 159 RSSVTKRCESVNTMVSFLWWMVGFYWVVSGGDVLLQNAPHLYWLAVVFLAFDVFFAIFCV 218

Query: 8   AL 3
            L
Sbjct: 219 VL 220


>gb|ABK96450.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 218

 Score =  115 bits (288), Expect = 1e-23
 Identities = 60/111 (54%), Positives = 71/111 (63%), Gaps = 5/111 (4%)
 Frame = -2

Query: 710 SIGSEEGVPLLRPRDVRPXXXXXXXXXXXXXXXXG-----PSNMVRETAAVQLEERRADW 546
           S  +E   PLLRPR   P                      PS +VRETAA +L+ERRADW
Sbjct: 2   STENEPHAPLLRPRQDPPTSPTSRQTTLSALLGRATGRRGPSMLVRETAARELDERRADW 61

Query: 545 GYSKPVVALDIAWNLAFTVVSIVMLSSTLGERPNTPIRVWIGGYALQCVIH 393
           GYSKPVV+LD+ WN AF VVS+ ML  T+ ERPNTPIR+WI GYALQC++H
Sbjct: 62  GYSKPVVSLDMMWNAAFVVVSVTMLLVTVKERPNTPIRIWICGYALQCLVH 112



 Score = 87.0 bits (214), Expect = 4e-15
 Identities = 34/43 (79%), Positives = 39/43 (90%)
 Frame = -2

Query: 188 RSSIAKRCESINTMASFFWWIVGFYWIVSGGDILLHNAPRLYW 60
           RSS+ KRCES+NTM SF WW+VGFYW+VSGGD+LL NAPRLYW
Sbjct: 159 RSSVTKRCESVNTMVSFLWWMVGFYWVVSGGDVLLQNAPRLYW 201


>gb|AEW07558.1| Pinus taeda anonymous locus 0_5075_01 genomic sequence
          Length = 130

 Score =  115 bits (287), Expect = 1e-23
 Identities = 51/71 (71%), Positives = 61/71 (85%)
 Frame = -2

Query: 605 PSNMVRETAAVQLEERRADWGYSKPVVALDIAWNLAFTVVSIVMLSSTLGERPNTPIRVW 426
           PS +VRE AA QLEER++DW YSKPVV LDI WNL+F VVS+V+LSSTL ERP TP+R+W
Sbjct: 49  PSMLVRENAAQQLEERQSDWAYSKPVVILDILWNLSFVVVSVVILSSTLDERPTTPLRIW 108

Query: 425 IGGYALQCVIH 393
           I GYALQC++H
Sbjct: 109 IAGYALQCILH 119