BLASTX nr result

ID: Coptis23_contig00010011 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00010011
         (561 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002323530.1| predicted protein [Populus trichocarpa] gi|2...   139   3e-31
ref|NP_190966.1| bifunctional inhibitor/lipid-transfer protein/s...   138   5e-31
ref|XP_002524256.1| lipid binding protein, putative [Ricinus com...   137   1e-30
gb|AAM65889.1| unknown [Arabidopsis thaliana]                         137   2e-30
ref|XP_002877950.1| protease inhibitor/seed storage/lipid transf...   136   3e-30

>ref|XP_002323530.1| predicted protein [Populus trichocarpa] gi|222868160|gb|EEF05291.1|
           predicted protein [Populus trichocarpa]
          Length = 116

 Score =  139 bits (350), Expect = 3e-31
 Identities = 70/114 (61%), Positives = 82/114 (71%)
 Frame = -1

Query: 558 MKYICILGLLVIIGFAGMERADGKGECGKESPDNVAFKLXXXXXXXXXXXXAVSNGCCSQ 379
           +K+I +LGLLV++  AG   AD  GECGK SPDN A KL            AVS+ CC Q
Sbjct: 5   LKFIGLLGLLVLLSVAG--GADAAGECGKSSPDNEAMKLAPCAEAAQDEKAAVSDSCCLQ 62

Query: 378 IKIMGQNPSCLCAVLLSNTAKMAGVDLATAITIPKRCNLANRPVGMKCGDYTLP 217
           +K MGQ PSCLCAV+LS+TAK +GV + TAITIPKRCN+ANRPVG KCG YTLP
Sbjct: 63  VKRMGQKPSCLCAVMLSDTAKASGVKIETAITIPKRCNIANRPVGYKCGGYTLP 116


>ref|NP_190966.1| bifunctional inhibitor/lipid-transfer protein/seed storage 2S
           albumin-like protein [Arabidopsis thaliana]
           gi|30693968|ref|NP_850700.1| bifunctional
           inhibitor/lipid-transfer protein/seed storage 2S
           albumin-like protein [Arabidopsis thaliana]
           gi|7630018|emb|CAB88360.1| putative protein [Arabidopsis
           thaliana] gi|27311679|gb|AAO00805.1| putative protein
           [Arabidopsis thaliana] gi|30102818|gb|AAP21327.1|
           At3g53980 [Arabidopsis thaliana]
           gi|332645646|gb|AEE79167.1| bifunctional
           inhibitor/lipid-transfer protein/seed storage 2S
           albumin-like protein [Arabidopsis thaliana]
           gi|332645647|gb|AEE79168.1| bifunctional
           inhibitor/lipid-transfer protein/seed storage 2S
           albumin-like protein [Arabidopsis thaliana]
          Length = 114

 Score =  138 bits (348), Expect = 5e-31
 Identities = 68/115 (59%), Positives = 79/115 (68%)
 Frame = -1

Query: 561 SMKYICILGLLVIIGFAGMERADGKGECGKESPDNVAFKLXXXXXXXXXXXXAVSNGCCS 382
           SMK++CILGL+++IG       DG GECG+ SPDN A KL            AV  GCC+
Sbjct: 4   SMKFLCILGLILLIGTV----VDGAGECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCT 59

Query: 381 QIKIMGQNPSCLCAVLLSNTAKMAGVDLATAITIPKRCNLANRPVGMKCGDYTLP 217
           QIK   QNP CLCA+LLS+TAK +GVD   A+TIPKRCN ANRPVG KCG YTLP
Sbjct: 60  QIKRFSQNPKCLCAILLSDTAKASGVDPEVALTIPKRCNFANRPVGYKCGAYTLP 114


>ref|XP_002524256.1| lipid binding protein, putative [Ricinus communis]
           gi|223536533|gb|EEF38180.1| lipid binding protein,
           putative [Ricinus communis]
          Length = 119

 Score =  137 bits (345), Expect = 1e-30
 Identities = 67/115 (58%), Positives = 79/115 (68%), Gaps = 1/115 (0%)
 Frame = -1

Query: 558 MKYICILGLLVIIGFAGMERADGKGECGKES-PDNVAFKLXXXXXXXXXXXXAVSNGCCS 382
           MK +C +  LV++G AG  R DG GECG+ + PD  AFKL             VS+ CC+
Sbjct: 5   MKSLCFVMFLVLLGVAGFNRVDGAGECGRSTTPDMEAFKLAPCASAAQDTTSPVSSQCCA 64

Query: 381 QIKIMGQNPSCLCAVLLSNTAKMAGVDLATAITIPKRCNLANRPVGMKCGDYTLP 217
           Q+K MGQNP CLCAV+LSNTAK +GV    AITIPKRCN+ANRPVG KCG YTLP
Sbjct: 65  QVKKMGQNPPCLCAVMLSNTAKSSGVQPENAITIPKRCNIANRPVGYKCGAYTLP 119


>gb|AAM65889.1| unknown [Arabidopsis thaliana]
          Length = 110

 Score =  137 bits (344), Expect = 2e-30
 Identities = 67/114 (58%), Positives = 78/114 (68%)
 Frame = -1

Query: 558 MKYICILGLLVIIGFAGMERADGKGECGKESPDNVAFKLXXXXXXXXXXXXAVSNGCCSQ 379
           MK++CILGL+++IG       DG GECG+ SPDN A KL            AV  GCC+Q
Sbjct: 1   MKFLCILGLILLIGTV----VDGAGECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCTQ 56

Query: 378 IKIMGQNPSCLCAVLLSNTAKMAGVDLATAITIPKRCNLANRPVGMKCGDYTLP 217
           IK   QNP CLCA+LLS+TAK +GVD   A+TIPKRCN ANRPVG KCG YTLP
Sbjct: 57  IKRFSQNPKCLCAILLSDTAKASGVDPEVALTIPKRCNFANRPVGYKCGAYTLP 110


>ref|XP_002877950.1| protease inhibitor/seed storage/lipid transfer protein family
           protein [Arabidopsis lyrata subsp. lyrata]
           gi|297323788|gb|EFH54209.1| protease inhibitor/seed
           storage/lipid transfer protein family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 114

 Score =  136 bits (342), Expect = 3e-30
 Identities = 66/115 (57%), Positives = 78/115 (67%)
 Frame = -1

Query: 561 SMKYICILGLLVIIGFAGMERADGKGECGKESPDNVAFKLXXXXXXXXXXXXAVSNGCCS 382
           S+K++CILGL+ ++G       DG GECG+ SPDN A KL            AV  GCC+
Sbjct: 4   SIKFLCILGLIFLVGAV----VDGAGECGRSSPDNEAMKLAPCAGAAQDANTAVPGGCCT 59

Query: 381 QIKIMGQNPSCLCAVLLSNTAKMAGVDLATAITIPKRCNLANRPVGMKCGDYTLP 217
           QIK   QNP CLCA+LLS+TAK +GVD   A+TIPKRCN ANRPVG KCG YTLP
Sbjct: 60  QIKRFSQNPKCLCAILLSDTAKASGVDPEVALTIPKRCNFANRPVGYKCGPYTLP 114


Top