BLASTX nr result
ID: Coptis23_contig00009956
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00009956
(1276 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003593882.1| F-box protein SKIP19 [Medicago truncatula] g... 133 1e-28
ref|XP_003546075.1| PREDICTED: F-box protein SKIP19-like [Glycin... 132 2e-28
ref|XP_002274093.1| PREDICTED: F-box protein SKIP19 [Vitis vinif... 127 5e-27
ref|XP_002874843.1| hypothetical protein ARALYDRAFT_911810 [Arab... 126 1e-26
ref|XP_004134625.1| PREDICTED: F-box protein SKIP19-like [Cucumi... 125 2e-26
>ref|XP_003593882.1| F-box protein SKIP19 [Medicago truncatula]
gi|355482930|gb|AES64133.1| F-box protein SKIP19
[Medicago truncatula]
Length = 332
Score = 133 bits (334), Expect = 1e-28
Identities = 97/264 (36%), Positives = 142/264 (53%), Gaps = 6/264 (2%)
Frame = +1
Query: 199 NWLDMPSDVMLVILSKLDVFQILCYAQFVCSSWLQLAKDPFLYRSILVP----DRYNSKA 366
NWLD+PSDV+L I KL +L A VC++W +++KDPFLY +I +P D +
Sbjct: 24 NWLDLPSDVVLTIFRKLHTIDLLHRAHNVCTTWRKISKDPFLYHTIDMPNIGTDLSSDFY 83
Query: 367 LDLLCSNNKKGMVLGLRVLKDAVKRSSGELKEISLAKSWCTDDLLFTGVMKNM--TGTYL 540
L++LC AV SSG+ +I++ + + TDDLL +++ + +L
Sbjct: 84 LEILCQR--------------AVDYSSGQATDINI-EYFGTDDLL-----RHIADSANHL 123
Query: 541 KSLKLASFREITRTPLTASAFRKLHFLEELELKDNDAFILDSGYIIEIVTRSCPRLKYFS 720
+ L+L +T L A KL LEEL++ + S +E + R CP+LK F
Sbjct: 124 QRLRLLGCYNVTDEGLCEVA-GKLSHLEELDITIHSL----SNDPLEAIGRCCPQLKTFK 178
Query: 721 FINTIGDKRFESWCEGVAFTIAHCMPHLRGLRLYLTCLTNQGLRAIIKGCPHLENLDLRG 900
F N G +R + AF+IA MP LR L L ++ GLRAI+ GCPHLE+LD+R
Sbjct: 179 F-NIEGFRRPRMEFDDEAFSIAKTMPGLRHLMLVGNKMSKDGLRAILDGCPHLESLDIRQ 237
Query: 901 CCYNDLQEDLQKECLKKIRDLSLP 972
C L+ L K C ++I+ L LP
Sbjct: 238 CFNLSLRGSLGKRCREQIKYLRLP 261
>ref|XP_003546075.1| PREDICTED: F-box protein SKIP19-like [Glycine max]
Length = 318
Score = 132 bits (331), Expect = 2e-28
Identities = 97/264 (36%), Positives = 145/264 (54%), Gaps = 2/264 (0%)
Frame = +1
Query: 187 QQQVNWLDMPSDVMLVILSKLDVFQILCYAQFVCSSWLQLAKDPFLYRSILVPDRYNSKA 366
+++ NWLD+P DV+ I KL +IL AQ VCS W ++K+P L+R+I
Sbjct: 15 EEERNWLDLPRDVVCTIFQKLGAIEILTRAQRVCSVWRGISKEPLLWRTI---------- 64
Query: 367 LDLLCSNNKKGMVLGLRVLKDAVKRSSGELKEISLAKSWCTDDLLFTGVMKNMTGTY--L 540
D+ S + + + L + A+ SSG L I++ + + TDDLL +++T + L
Sbjct: 65 -DMRNSGDIETNFVFLAMCHRAIDYSSGHLLHINI-EYFATDDLL-----RHITHSTSNL 117
Query: 541 KSLKLASFREITRTPLTASAFRKLHFLEELELKDNDAFILDSGYIIEIVTRSCPRLKYFS 720
+SL+LA +I+ L A ++L LEEL++ + + +E V R C LK
Sbjct: 118 RSLRLACCYQISDEGLCEIA-KELPQLEELDISISS--FNPTRDPLEAVGRCCRHLKTLK 174
Query: 721 FINTIGDKRFESWCEGVAFTIAHCMPHLRGLRLYLTCLTNQGLRAIIKGCPHLENLDLRG 900
F N G +R C+ AF IA MP L L+L+ LTN+GL AI+ GCPHLE+LDLR
Sbjct: 175 F-NMKGYRRPHIECDEEAFAIAETMPTLHHLQLFGNKLTNEGLLAILDGCPHLESLDLRQ 233
Query: 901 CCYNDLQEDLQKECLKKIRDLSLP 972
C +L L K C ++I++L LP
Sbjct: 234 CFNVNLAGSLGKRCAEQIKELRLP 257
>ref|XP_002274093.1| PREDICTED: F-box protein SKIP19 [Vitis vinifera]
gi|147853333|emb|CAN82327.1| hypothetical protein
VITISV_041807 [Vitis vinifera]
gi|297740788|emb|CBI30970.3| unnamed protein product
[Vitis vinifera]
Length = 321
Score = 127 bits (320), Expect = 5e-27
Identities = 93/268 (34%), Positives = 148/268 (55%), Gaps = 3/268 (1%)
Frame = +1
Query: 187 QQQVNWLDMPSDVMLVILSKLDVFQILCYAQFVCSSWLQLAKDPFLYRSILVPDRYNSKA 366
+++ NW ++P DV +ILSKL+ +IL AQFVCS W +L ++P ++R+I D +N
Sbjct: 15 EEERNWQELPRDVTSMILSKLNAVEILSSAQFVCSFWRKLCREPMMWRNI---DMHN--- 68
Query: 367 LDLLCSNNKKGMVLGL---RVLKDAVKRSSGELKEISLAKSWCTDDLLFTGVMKNMTGTY 537
L LC LG + + AV RS G+L I + + TD+LL + ++ ++
Sbjct: 69 LGDLCD-------LGYDLEEMARHAVDRSGGQLLSICI-DDFATDNLLNYIIDRS---SH 117
Query: 538 LKSLKLASFREITRTPLTASAFRKLHFLEELELKDNDAFILDSGYIIEIVTRSCPRLKYF 717
++ L+L S I+ L+ ++L L E++L + S ++E + + CPRLK F
Sbjct: 118 IRHLRLVSCYGISDDGLS-EGIKRLPLLVEIDL----CYCSFSKEVLEAIGQCCPRLKSF 172
Query: 718 SFINTIGDKRFESWCEGVAFTIAHCMPHLRGLRLYLTCLTNQGLRAIIKGCPHLENLDLR 897
+N G + C+ A IA MP L+ L+L+ LTN GL AI+ GC HLE+LDLR
Sbjct: 173 R-LNCQGFRHPHIECDEEALAIAQNMPGLKSLQLFGNKLTNNGLLAILDGCCHLESLDLR 231
Query: 898 GCCYNDLQEDLQKECLKKIRDLSLPSSN 981
C +L +L K C ++I+ L P+ +
Sbjct: 232 QCFNVNLGGNLAKRCAEQIKILRYPNDS 259
>ref|XP_002874843.1| hypothetical protein ARALYDRAFT_911810 [Arabidopsis lyrata subsp.
lyrata] gi|297320680|gb|EFH51102.1| hypothetical protein
ARALYDRAFT_911810 [Arabidopsis lyrata subsp. lyrata]
Length = 610
Score = 126 bits (317), Expect = 1e-26
Identities = 98/273 (35%), Positives = 138/273 (50%), Gaps = 10/273 (3%)
Frame = +1
Query: 199 NWLDMPSDVMLVILSKLDVFQILCYAQFVCSSWLQLAKDPFLYRSILVPDRYNSKALDLL 378
NW ++P ++ IL +L IL AQ VC SW ++ KDP ++R I +D L
Sbjct: 346 NWAELPPELTSSILGRLGTIDILENAQKVCRSWRRVCKDPSMWRKI---------DMDNL 396
Query: 379 CSNNKKGMVLGLRVLKDAVKRSSGELKEISLAKSWC--TDDLLFTGVMKNMTGTYL--KS 546
G L + + + AV RS G L EI + W TD+LL Y+ +S
Sbjct: 397 GDLGAMGYDLEI-MCRHAVDRSQGGLVEIDI---WYFGTDELL----------NYIADRS 442
Query: 547 LKLASFREITRTPLTASAFR----KLHFLEELELKDNDAFILDSGYIIEIVTRSCPRLKY 714
L + R I P+ F KL +E LEL SG +++V +SCP LK
Sbjct: 443 SNLRTLRLIMCYPIADEGFIEAVVKLPLIEYLELSHCSL----SGESLKVVGQSCPNLKT 498
Query: 715 FSFINTIGDKRF--ESWCEGVAFTIAHCMPHLRGLRLYLTCLTNQGLRAIIKGCPHLENL 888
+N+ D +F + + A IA MP LR L+L+ LTN GL AI+ GCPHLE+L
Sbjct: 499 LK-LNSEPDPKFNDDEFNNEEALAIAESMPELRHLQLFGNILTNVGLNAILDGCPHLEHL 557
Query: 889 DLRGCCYNDLQEDLQKECLKKIRDLSLPSSNVA 987
DLR C DL DL+K C+++I+DL P+ + A
Sbjct: 558 DLRKCSNVDLTGDLEKRCVERIKDLKRPTDSTA 590
Score = 121 bits (303), Expect = 4e-25
Identities = 93/282 (32%), Positives = 144/282 (51%), Gaps = 10/282 (3%)
Frame = +1
Query: 199 NWLDMPSDVMLVILSKLDVFQILCYAQFVCSSWLQLAKDPFLYRSILVPDRYNSKA---- 366
NW ++P+++ IL +L V +IL AQ VC SW ++ KDP ++R I++ + N
Sbjct: 8 NWAELPAELTSSILLRLGVVEILENAQKVCRSWRRVCKDPSMWRKIVIDNSGNRDIFKYD 67
Query: 367 LDLLCSNNKKGMVLGLRVLKDAVKRSSGELKEISLAKSWCTDDLL------FTGVMKNMT 528
LD +C + AV RS G L EI + + + TD LL F+ + +++
Sbjct: 68 LDSMC--------------RHAVDRSQGGLLEIDI-EYFGTDKLLDYIADRFSLSLFSIS 112
Query: 529 GTYLKSLKLASFREITRTPLTASAFRKLHFLEELELKDNDAFILDSGYIIEIVTRSCPRL 708
L+SL+L +IT + A A KL LE+LE+ ++ SG + +V +SCP L
Sbjct: 113 SN-LRSLRLVRCHQITDKGV-AEAVVKLPLLEDLEV----SYCSFSGECLSVVGQSCPHL 166
Query: 709 KYFSFINTIGDKRFESWCEGVAFTIAHCMPHLRGLRLYLTCLTNQGLRAIIKGCPHLENL 888
+ + + A IA MP LR L+L LTN GL AI+ C HL++L
Sbjct: 167 TTLKLNRRPRVEFVINMRDHNAIAIAESMPELRHLQLLGNALTNTGLNAILDSCTHLDHL 226
Query: 889 DLRGCCYNDLQEDLQKECLKKIRDLSLPSSNVAPPLLRQHFL 1014
DLR C +L ED K+C+++I+ L P+ ++A FL
Sbjct: 227 DLRQCYNINLVEDFMKQCVERIKYLRCPNDSIADCSTETSFL 268
>ref|XP_004134625.1| PREDICTED: F-box protein SKIP19-like [Cucumis sativus]
gi|449490588|ref|XP_004158648.1| PREDICTED: F-box
protein SKIP19-like [Cucumis sativus]
Length = 311
Score = 125 bits (315), Expect = 2e-26
Identities = 94/258 (36%), Positives = 139/258 (53%)
Frame = +1
Query: 199 NWLDMPSDVMLVILSKLDVFQILCYAQFVCSSWLQLAKDPFLYRSILVPDRYNSKALDLL 378
NWL++P DV +IL KL +IL YAQ+VCSSW ++ +DP ++R ++ RY D+
Sbjct: 16 NWLELPVDVTSMILQKLGPVEILTYAQYVCSSWRKICEDPLMWR--VIDMRYPCDWWDMD 73
Query: 379 CSNNKKGMVLGLRVLKDAVKRSSGELKEISLAKSWCTDDLLFTGVMKNMTGTYLKSLKLA 558
+ + + + AVKRS G+L ++ + + TDDLL + + L L+L
Sbjct: 74 YNLEE--------LCRQAVKRSCGQLIHFNI-EHFGTDDLL---LYITQSCNQLSRLRLV 121
Query: 559 SFREITRTPLTASAFRKLHFLEELELKDNDAFILDSGYIIEIVTRSCPRLKYFSFINTIG 738
I+ L A KL LE+LEL +F +E + ++CP LK +N
Sbjct: 122 YCNRISDEGLV-EAVSKLPLLEDLEL----SFCSFDVETLETLGQNCPGLKSLK-LNRQF 175
Query: 739 DKRFESWCEGVAFTIAHCMPHLRGLRLYLTCLTNQGLRAIIKGCPHLENLDLRGCCYNDL 918
+R E C+ A IA MP+LR L ++ LTN+GL AI+ GC LE+LDLR C +L
Sbjct: 176 YRRVE--CDKGALAIAENMPNLRHLHIFGNNLTNKGLEAILDGCSALESLDLRHCFNLNL 233
Query: 919 QEDLQKECLKKIRDLSLP 972
L +C +KI+DL LP
Sbjct: 234 AGQLGAKCSEKIKDLRLP 251