BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00009923
         (749 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267663.1| PREDICTED: E3 ubiquitin-protein ligase COP1-...   368   e-100
ref|XP_002267709.1| PREDICTED: E3 ubiquitin-protein ligase COP1-...   366   2e-99
ref|NP_568435.2| transducin/WD40 domain-containing protein [Arab...   363   2e-98
ref|XP_002872071.1| nucleotide binding protein [Arabidopsis lyra...   360   2e-97
ref|XP_002528808.1| ubiquitin ligase protein cop1, putative [Ric...   350   2e-94

>ref|XP_002267663.1| PREDICTED: E3 ubiquitin-protein ligase COP1-like [Vitis vinifera]
          Length = 382

 Score =  368 bits (945), Expect = e-100
 Identities = 169/249 (67%), Positives = 195/249 (78%)
 Frame = +3

Query: 3   KPNTSGRVVGSGDYDGVVTEYDLERCMPIFERDEHGGRRVWSLDYSHSGSTIGASGSDDG 182
           KP +SGRV+GSGDYDGVVTEYDL+R +PIFERDEHGGRR+WS+DYSH    +GASGSDDG
Sbjct: 125 KPGSSGRVLGSGDYDGVVTEYDLDRKIPIFERDEHGGRRIWSVDYSHWNPFVGASGSDDG 184

Query: 183 TLQMWDTRCVGNKWVAMAQPSMSRSAVCCVEFDPYGGDLIAVGCADRKAYIYDIRDMSNP 362
           T+QMWD RC G   VA  +PS    AVCCVEF+P+GG L+AVGCADR+AY YD+R M +P
Sbjct: 185 TIQMWDPRCEGTTNVAKVRPSAGGGAVCCVEFNPFGGPLVAVGCADRRAYGYDVRKMVDP 244

Query: 363 MSSFHGHQKTVSYVRFLGNGMMVSAGTDGCLKLWDMKDAQTVRTYRGHTNNRNFVGLSVW 542
           +  F GHQK V+YVRFL   MMV++GTDGCL+LW M DA+ +R Y GH N RNFVGLSVW
Sbjct: 245 VLIFDGHQKPVTYVRFLDEHMMVTSGTDGCLRLWSMHDARMIRVYMGHMNTRNFVGLSVW 304

Query: 543 RNGGLLGCGSESNEVFVYDKRWGNPMWVHRLEPTVGAGRDHRFISSVCWRQVENDECTLV 722
           R GGLLGCGSE+N VFVYDKRW  P+WVH        G D +F+SSVCWRQV  D CTLV
Sbjct: 305 RTGGLLGCGSENNHVFVYDKRWSEPIWVHEFGGGSRDGCDPKFVSSVCWRQVGKDVCTLV 364

Query: 723 AGGCDGVLQ 749
           AGG DG LQ
Sbjct: 365 AGGSDGSLQ 373


>ref|XP_002267709.1| PREDICTED: E3 ubiquitin-protein ligase COP1-like [Vitis vinifera]
          Length = 383

 Score =  366 bits (940), Expect = 2e-99
 Identities = 170/250 (68%), Positives = 199/250 (79%), Gaps = 1/250 (0%)
 Frame = +3

Query: 3   KPNTSGRVVGSGDYDGVVTEYDLERCMPIFERDEHGGRRVWSLDYSHSGSTIGASGSDDG 182
           KP ++GRV+GSGDYDGVVTEYDL++ +PIFERDEHGGRR+WS+DYSH    +GASGSDDG
Sbjct: 125 KPGSAGRVLGSGDYDGVVTEYDLDQKIPIFERDEHGGRRIWSVDYSHWDPFVGASGSDDG 184

Query: 183 TLQMWDTRCVGNKWVAMAQPSMSRSAVCCVEFDPYGGDLIAVGCADRKAYIYDIRDMSNP 362
           T+QMWD RC G K VA  +PS   SAVCCVEF+P+GG LIAVGCADR+AY YD+R M +P
Sbjct: 185 TMQMWDPRCEGIKNVAKVRPSGGGSAVCCVEFNPFGGPLIAVGCADRRAYGYDVRKMVDP 244

Query: 363 MSSFHGHQKTVSYVRFLGNGMMVSAGTDGCLKLWDMKDAQTVRTYRGHTNNRNFVGLSVW 542
           +  F GHQKTV+YVRFL    MV++GTDGCL+LW M DA+ +R Y GH N R+FVGLSVW
Sbjct: 245 VLIFDGHQKTVTYVRFLDQHTMVTSGTDGCLRLWSMHDARMIRVYMGHMNTRSFVGLSVW 304

Query: 543 RNGGLLGCGSESNEVFVYDKRWGNPMWVHRLEPTVGAGRDHRFISSVCWRQV-ENDECTL 719
           R GGLLGCGSE+N VFVYDKRWG P+WVH        GRD  F+SSVCWRQV   D CTL
Sbjct: 305 RTGGLLGCGSENNHVFVYDKRWGEPIWVHEFGVGSRDGRDPNFVSSVCWRQVGGEDGCTL 364

Query: 720 VAGGCDGVLQ 749
           VAGG DG+L+
Sbjct: 365 VAGGSDGILE 374


>ref|NP_568435.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana]
           gi|10176840|dbj|BAB10046.1| unnamed protein product
           [Arabidopsis thaliana] gi|332005822|gb|AED93205.1|
           transducin/WD40 domain-containing protein [Arabidopsis
           thaliana]
          Length = 368

 Score =  363 bits (933), Expect = 2e-98
 Identities = 167/253 (66%), Positives = 200/253 (79%), Gaps = 4/253 (1%)
 Frame = +3

Query: 3   KPNTSGRVVGSGDYDGVVTEYDLERCMPIFERDEHGGRRVWSLDYSHSG--STIGASGSD 176
           +P + GRV+GSGDYDGVV EYDLE+  P+FERDEHGGRRVWS+DY+  G  ST+GASGSD
Sbjct: 108 RPGSGGRVIGSGDYDGVVMEYDLEKRTPVFERDEHGGRRVWSVDYTRHGGASTVGASGSD 167

Query: 177 DGTLQMWDTRCVGNKWVAMAQPS-MSRSAVCCVEFDPYGGDLIAVGCADRKAYIYDIRDM 353
           DGT+Q+WD RC   + V + +P+ + RSAVCCVEFDP GG  +AVGCADRK Y+YDIR +
Sbjct: 168 DGTMQVWDPRCPPEESVGVVRPAGICRSAVCCVEFDPSGGPAVAVGCADRKGYVYDIRKL 227

Query: 354 SNPMSSFHGHQKTVSYVRFLGNGMMVSAGTDGCLKLWDMKDAQTVRTYRGHTNNRNFVGL 533
            +P  +  GH KTVSYVRFL  G +V+AGTDGCLKLW ++D + +RTY GH NNRNFVGL
Sbjct: 228 VDPALTLQGHTKTVSYVRFLDGGTVVTAGTDGCLKLWSVEDGRVIRTYEGHVNNRNFVGL 287

Query: 534 SVWRNGGLLGCGSESNEVFVYDKRWGNPMWVHRLEPT-VGAGRDHRFISSVCWRQVENDE 710
           SVWRNG L GCGSE+N VFVYD+RWG P+WV   EP  + +G D RF+SSVCWRQ   D+
Sbjct: 288 SVWRNGALFGCGSENNRVFVYDRRWGKPVWVDGFEPVGMNSGSDKRFVSSVCWRQSGVDQ 347

Query: 711 CTLVAGGCDGVLQ 749
           CTLVAGG DGVLQ
Sbjct: 348 CTLVAGGSDGVLQ 360


>ref|XP_002872071.1| nucleotide binding protein [Arabidopsis lyrata subsp. lyrata]
           gi|297317908|gb|EFH48330.1| nucleotide binding protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 365

 Score =  360 bits (923), Expect = 2e-97
 Identities = 166/253 (65%), Positives = 199/253 (78%), Gaps = 4/253 (1%)
 Frame = +3

Query: 3   KPNTSGRVVGSGDYDGVVTEYDLERCMPIFERDEHGGRRVWSLDYSHSG--STIGASGSD 176
           +P +  RV+GSGDYDGVVTEYDLE+  P+FERDEHGGRRVWS+DY+  G  S +GASGSD
Sbjct: 105 RPGSGSRVIGSGDYDGVVTEYDLEKRTPVFERDEHGGRRVWSVDYTRHGDASAVGASGSD 164

Query: 177 DGTLQMWDTRCVGNKWVAMAQPS-MSRSAVCCVEFDPYGGDLIAVGCADRKAYIYDIRDM 353
           DGT+Q+WD RC   + V++ +PS + RSAVCCVEFDP GG  +AVGCADRK Y+YDIR +
Sbjct: 165 DGTMQVWDPRCPPEESVSVVRPSGICRSAVCCVEFDPSGGPTVAVGCADRKGYVYDIRKL 224

Query: 354 SNPMSSFHGHQKTVSYVRFLGNGMMVSAGTDGCLKLWDMKDAQTVRTYRGHTNNRNFVGL 533
            +P  +  GH KTVSYVRFL    +V+AGTDGCLKLW ++D + +RTY GH NNRNFVGL
Sbjct: 225 VDPALTLQGHTKTVSYVRFLDGCTVVTAGTDGCLKLWSVEDGRVIRTYEGHVNNRNFVGL 284

Query: 534 SVWRNGGLLGCGSESNEVFVYDKRWGNPMWVHRLEPT-VGAGRDHRFISSVCWRQVENDE 710
           SVWRNG L GCGSE+N VFVYD+RWG P+WV   EP  + +G D RF+SSVCWRQ   D+
Sbjct: 285 SVWRNGALFGCGSENNRVFVYDRRWGKPVWVDGFEPVGMNSGSDKRFVSSVCWRQSGVDQ 344

Query: 711 CTLVAGGCDGVLQ 749
           CTLVAGG DGVLQ
Sbjct: 345 CTLVAGGSDGVLQ 357


>ref|XP_002528808.1| ubiquitin ligase protein cop1, putative [Ricinus communis]
           gi|223531761|gb|EEF33581.1| ubiquitin ligase protein
           cop1, putative [Ricinus communis]
          Length = 426

 Score =  350 bits (897), Expect = 2e-94
 Identities = 160/251 (63%), Positives = 197/251 (78%), Gaps = 2/251 (0%)
 Frame = +3

Query: 3   KPNTSGRVVGSGDYDGVVTEYDLERCMPIFERDEHGGRRVWSLDYSHSGSTIGASGSDDG 182
           KP + GRV+GSGDYDGVV EYD+E  +PIFERDEHGGRR+WS+DYSH    +GASGSDDG
Sbjct: 167 KPCSGGRVIGSGDYDGVVMEYDVETRIPIFERDEHGGRRIWSVDYSHWSPVVGASGSDDG 226

Query: 183 TLQMWDTRCVGNKWVAMAQPSMSRS--AVCCVEFDPYGGDLIAVGCADRKAYIYDIRDMS 356
           T+QMWD R  G   VA  +PS++ S  AVC VEF+P+GG +IAVGCADR+ Y YD+R ++
Sbjct: 227 TMQMWDPRHEGGGCVATVKPSVTSSCRAVCSVEFNPFGGSIIAVGCADRRVYGYDVRMIT 286

Query: 357 NPMSSFHGHQKTVSYVRFLGNGMMVSAGTDGCLKLWDMKDAQTVRTYRGHTNNRNFVGLS 536
           NP+    GH+KTV+YVRF+ NG + SAG DGCLKLW+++D+Q +RTY+GH N+RNFVGLS
Sbjct: 287 NPVFVLDGHKKTVTYVRFMDNGTLASAGIDGCLKLWNLQDSQLLRTYKGHLNSRNFVGLS 346

Query: 537 VWRNGGLLGCGSESNEVFVYDKRWGNPMWVHRLEPTVGAGRDHRFISSVCWRQVENDECT 716
           VWRNGGLLGCGSE+N+VFVYDKRW  P+W +   P      DH F++SVCW QV  D CT
Sbjct: 347 VWRNGGLLGCGSENNQVFVYDKRWSEPIWAYGSGPAA----DHGFVNSVCWSQVGEDRCT 402

Query: 717 LVAGGCDGVLQ 749
           LV GG +GVLQ
Sbjct: 403 LVTGGSNGVLQ 413