BLASTX nr result

ID: Coptis23_contig00009760 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00009760
         (872 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283376.1| PREDICTED: ubiquitin carboxyl-terminal hydro...   327   3e-87
ref|XP_002324922.1| predicted protein [Populus trichocarpa] gi|2...   310   4e-82
ref|XP_004145492.1| PREDICTED: ubiquitin carboxyl-terminal hydro...   309   5e-82
ref|XP_002515408.1| Ubiquitin carboxyl-terminal hydrolase, putat...   302   6e-80
ref|XP_003544592.1| PREDICTED: ubiquitin carboxyl-terminal hydro...   295   7e-78

>ref|XP_002283376.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Vitis
           vinifera]
          Length = 553

 Score =  327 bits (837), Expect = 3e-87
 Identities = 158/202 (78%), Positives = 175/202 (86%), Gaps = 1/202 (0%)
 Frame = -2

Query: 868 KTSQDTSISTLLGCLDLFTRPEKLGSDQKLYCQHCQVRRDSLKQMSIRRLPSVLCFHMKR 689
           K +++  ISTLLGCLDLFTRPEKLG DQKLYCQ+CQ RR+SLKQMSIRRLP VLC H+KR
Sbjct: 352 KPNENAIISTLLGCLDLFTRPEKLGPDQKLYCQNCQERRNSLKQMSIRRLPIVLCLHIKR 411

Query: 688 FEHSLIRKKSRKIDRYLQFPFSLDMTPYLSSSIVRNRFGNRIFAFEGDESDISTEFEVFA 509
           FEHS IRK SRKID+YLQFPFSLDMTPYLSSSIVRNRFGNRIF FEGDES+  TEFEVFA
Sbjct: 412 FEHSTIRKMSRKIDQYLQFPFSLDMTPYLSSSIVRNRFGNRIFTFEGDESETCTEFEVFA 471

Query: 508 VVTHSGNLESGHYVTYLRLRNQWYKCDDAWITQVSDGVVRASQGYLLYYVQKTPCYKASE 329
           VVTHSG LESGHYVTY+R+RN+WYKCDDAWIT+V +GVVRASQ YL+YYVQK   YKASE
Sbjct: 472 VVTHSGMLESGHYVTYVRVRNRWYKCDDAWITEVDEGVVRASQCYLMYYVQKGFYYKASE 531

Query: 328 DLSC-PQQSPRHDPFVPTPGCC 266
           DLSC P   P  + ++P  GCC
Sbjct: 532 DLSCLPMSPPGGESYLPIAGCC 553


>ref|XP_002324922.1| predicted protein [Populus trichocarpa] gi|222866356|gb|EEF03487.1|
           predicted protein [Populus trichocarpa]
          Length = 478

 Score =  310 bits (793), Expect = 4e-82
 Identities = 146/198 (73%), Positives = 168/198 (84%)
 Frame = -2

Query: 859 QDTSISTLLGCLDLFTRPEKLGSDQKLYCQHCQVRRDSLKQMSIRRLPSVLCFHMKRFEH 680
           +DT  STLL CLDLFTRPE+LGSDQKLYCQ+CQ +RDSLKQMSI+RLP VL  H+KRFEH
Sbjct: 281 EDTGRSTLLACLDLFTRPERLGSDQKLYCQNCQEKRDSLKQMSIKRLPLVLSLHIKRFEH 340

Query: 679 SLIRKKSRKIDRYLQFPFSLDMTPYLSSSIVRNRFGNRIFAFEGDESDISTEFEVFAVVT 500
           S +R+ SRKID YLQFPFSLDMTPYLS SIVRNRFGNR+F FE D+ DIS+EFE+FAVVT
Sbjct: 341 SSLRRSSRKIDWYLQFPFSLDMTPYLSPSIVRNRFGNRVFGFESDKPDISSEFEIFAVVT 400

Query: 499 HSGNLESGHYVTYLRLRNQWYKCDDAWITQVSDGVVRASQGYLLYYVQKTPCYKASEDLS 320
           HSG L+SGHYVTYLRL+NQWYKCDDAWIT+V + +VRA+Q Y+++YVQK    KA+ED S
Sbjct: 401 HSGMLDSGHYVTYLRLQNQWYKCDDAWITEVDERIVRAAQCYMIFYVQKMLYCKANEDWS 460

Query: 319 CPQQSPRHDPFVPTPGCC 266
           C   S R DPFVP  GCC
Sbjct: 461 CMPISTRRDPFVPIAGCC 478


>ref|XP_004145492.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Cucumis
           sativus] gi|449515075|ref|XP_004164575.1| PREDICTED:
           ubiquitin carboxyl-terminal hydrolase 22-like [Cucumis
           sativus]
          Length = 552

 Score =  309 bits (792), Expect = 5e-82
 Identities = 146/201 (72%), Positives = 172/201 (85%)
 Frame = -2

Query: 868 KTSQDTSISTLLGCLDLFTRPEKLGSDQKLYCQHCQVRRDSLKQMSIRRLPSVLCFHMKR 689
           K +  +S STL GCLDLFTRPEKLGSDQKL+CQ+CQ +R+S+KQMSIRRLP VLC H+KR
Sbjct: 352 KPADFSSKSTLSGCLDLFTRPEKLGSDQKLFCQNCQEKRNSVKQMSIRRLPLVLCLHIKR 411

Query: 688 FEHSLIRKKSRKIDRYLQFPFSLDMTPYLSSSIVRNRFGNRIFAFEGDESDISTEFEVFA 509
           FEHS IR+ SRKIDRYLQFPFSLDM PYLSSSI+RNRFGNRIFA EGDE D S++FE+FA
Sbjct: 412 FEHSFIRRTSRKIDRYLQFPFSLDMIPYLSSSIIRNRFGNRIFASEGDELDASSKFEIFA 471

Query: 508 VVTHSGNLESGHYVTYLRLRNQWYKCDDAWITQVSDGVVRASQGYLLYYVQKTPCYKASE 329
           VV+HSG LESGHYVTYLRLRN+WYKCDDAWIT+V + +VR SQ Y+++Y+QKT  +K++E
Sbjct: 472 VVSHSGTLESGHYVTYLRLRNRWYKCDDAWITEVDEEMVRNSQCYMMFYLQKTASHKSNE 531

Query: 328 DLSCPQQSPRHDPFVPTPGCC 266
           DLSC   SPR+D F    GCC
Sbjct: 532 DLSCLPISPRNDAFQQIAGCC 552


>ref|XP_002515408.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
           gi|223545352|gb|EEF46857.1| Ubiquitin carboxyl-terminal
           hydrolase, putative [Ricinus communis]
          Length = 551

 Score =  302 bits (774), Expect = 6e-80
 Identities = 142/201 (70%), Positives = 166/201 (82%)
 Frame = -2

Query: 868 KTSQDTSISTLLGCLDLFTRPEKLGSDQKLYCQHCQVRRDSLKQMSIRRLPSVLCFHMKR 689
           + +++    TL  CLDLFTRPEKLGSDQKLYCQ+C+ +RDS KQMSI+RLP VL  H+KR
Sbjct: 351 RPNENAGKCTLSACLDLFTRPEKLGSDQKLYCQNCEEKRDSFKQMSIKRLPLVLSLHIKR 410

Query: 688 FEHSLIRKKSRKIDRYLQFPFSLDMTPYLSSSIVRNRFGNRIFAFEGDESDISTEFEVFA 509
           FEHS +RK SRKID +LQFPFSLDMT YLSSSI+R RFGNRIFAF+ DE+D S EFE+FA
Sbjct: 411 FEHSPVRKLSRKIDWHLQFPFSLDMTSYLSSSILRKRFGNRIFAFDSDEADTSAEFEIFA 470

Query: 508 VVTHSGNLESGHYVTYLRLRNQWYKCDDAWITQVSDGVVRASQGYLLYYVQKTPCYKASE 329
           V+THSG LESGHYVTYLRLRNQWYKCDDAWIT+V + +VRASQ Y+++YVQKT  YKA+E
Sbjct: 471 VITHSGMLESGHYVTYLRLRNQWYKCDDAWITEVDETIVRASQCYMIFYVQKTHYYKANE 530

Query: 328 DLSCPQQSPRHDPFVPTPGCC 266
           DLS      R DPF+P  GCC
Sbjct: 531 DLSRTSMPQRRDPFIPIAGCC 551


>ref|XP_003544592.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Glycine
           max]
          Length = 554

 Score =  295 bits (756), Expect = 7e-78
 Identities = 140/201 (69%), Positives = 168/201 (83%)
 Frame = -2

Query: 868 KTSQDTSISTLLGCLDLFTRPEKLGSDQKLYCQHCQVRRDSLKQMSIRRLPSVLCFHMKR 689
           K ++D S+STL GCLDLFTRPEKLGSDQKLYCQ+C+ R+DSLKQMSIR+LP VL  H+KR
Sbjct: 354 KQNEDGSMSTLSGCLDLFTRPEKLGSDQKLYCQNCRERQDSLKQMSIRKLPLVLSLHVKR 413

Query: 688 FEHSLIRKKSRKIDRYLQFPFSLDMTPYLSSSIVRNRFGNRIFAFEGDESDISTEFEVFA 509
           FEHS ++K SRKIDRYL FPFSLDMTPYLSSSI+R R+GNR F F GD+SD+ +EFE+FA
Sbjct: 414 FEHSFVKKCSRKIDRYLHFPFSLDMTPYLSSSILRARYGNRNFTFGGDQSDMFSEFEIFA 473

Query: 508 VVTHSGNLESGHYVTYLRLRNQWYKCDDAWITQVSDGVVRASQGYLLYYVQKTPCYKASE 329
           VVTHSG LESGHYV+++R+RNQWY+C+DAWIT V +  VRASQ Y+++YVQKT   KA+E
Sbjct: 474 VVTHSGTLESGHYVSFVRVRNQWYRCNDAWITVVDEATVRASQCYMIFYVQKTLHNKANE 533

Query: 328 DLSCPQQSPRHDPFVPTPGCC 266
           DLS    SP  D F+P  GCC
Sbjct: 534 DLSHVPNSPGRDLFLPIAGCC 554


Top