BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00009687
         (452 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_005090486.1| ribosomal protein S4 (mitochondrion) [Lotus ...    68   9e-10
ref|YP_005090450.1| ribosomal protein S4 (mitochondrion) [Millet...    68   9e-10
ref|YP_717175.1| ribosomal protein S4 [Brassica napus] gi|375911...    67   2e-09
sp|Q31708.2|RT04_ARATH RecName: Full=Ribosomal protein S4, mitoc...    67   2e-09
gb|ACH78250.1| ribosomal protein S4 [Arabidopsis thaliana]             67   2e-09

>ref|YP_005090486.1| ribosomal protein S4 (mitochondrion) [Lotus japonicus]
           gi|357197350|gb|AET62946.1| ribosomal protein S4
           (mitochondrion) [Lotus japonicus]
          Length = 358

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 30/41 (73%), Positives = 34/41 (82%)
 Frame = -3

Query: 339 RRRIKKIELPTHYLEANYRTMKAVVFYAPNIAHIPQSKALQ 217
           +RRIK+IELPTHYLE NYRT+KAVVFY PNI HIP    L+
Sbjct: 302 KRRIKRIELPTHYLEVNYRTLKAVVFYGPNIGHIPHDIRLK 342


>ref|YP_005090450.1| ribosomal protein S4 (mitochondrion) [Millettia pinnata]
           gi|372450274|ref|YP_005090457.1| ribosomal protein S4
           (mitochondrion) [Millettia pinnata]
           gi|357197313|gb|AET62910.1| ribosomal protein S4
           (mitochondrion) [Millettia pinnata]
           gi|357197320|gb|AET62917.1| ribosomal protein S4
           (mitochondrion) [Millettia pinnata]
          Length = 358

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 30/41 (73%), Positives = 34/41 (82%)
 Frame = -3

Query: 339 RRRIKKIELPTHYLEANYRTMKAVVFYAPNIAHIPQSKALQ 217
           +RRIK+IELPTHYLE NYRT+KAVVFY PNI HIP    L+
Sbjct: 302 KRRIKRIELPTHYLEVNYRTLKAVVFYGPNIGHIPHDIRLK 342


>ref|YP_717175.1| ribosomal protein S4 [Brassica napus] gi|37591124|dbj|BAC98926.1|
           ribosomal protein S4 [Brassica napus]
          Length = 362

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 31/45 (68%), Positives = 35/45 (77%)
 Frame = -3

Query: 351 KNSRRRRIKKIELPTHYLEANYRTMKAVVFYAPNIAHIPQSKALQ 217
           K + +RRIK+IELPTHYLE NYRT KAVVFY PNI HIP    L+
Sbjct: 302 KLTMKRRIKRIELPTHYLEVNYRTPKAVVFYGPNIGHIPHDIRLK 346


>sp|Q31708.2|RT04_ARATH RecName: Full=Ribosomal protein S4, mitochondrial
          Length = 362

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 31/45 (68%), Positives = 35/45 (77%)
 Frame = -3

Query: 351 KNSRRRRIKKIELPTHYLEANYRTMKAVVFYAPNIAHIPQSKALQ 217
           K + +RRIK+IELPTHYLE NYRT KAVVFY PNI HIP    L+
Sbjct: 302 KLTMKRRIKRIELPTHYLEVNYRTPKAVVFYGPNIGHIPHDIRLK 346


>gb|ACH78250.1| ribosomal protein S4 [Arabidopsis thaliana]
          Length = 362

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 31/45 (68%), Positives = 35/45 (77%)
 Frame = -3

Query: 351 KNSRRRRIKKIELPTHYLEANYRTMKAVVFYAPNIAHIPQSKALQ 217
           K + +RRIK+IELPTHYLE NYRT KAVVFY PNI HIP    L+
Sbjct: 302 KLTMKRRIKRIELPTHYLEVNYRTPKAVVFYGPNIGHIPHDIRLK 346