BLASTX nr result
ID: Coptis23_contig00009686
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00009686
(2167 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002319493.1| predicted protein [Populus trichocarpa] gi|2... 348 3e-93
ref|XP_002330183.1| predicted protein [Populus trichocarpa] gi|2... 342 2e-91
ref|XP_002278421.1| PREDICTED: uncharacterized protein LOC100240... 335 4e-89
ref|XP_002512479.1| splicing factor, arginine/serine-rich 2,rnap... 311 5e-82
ref|NP_187218.1| RING/U-box protein [Arabidopsis thaliana] gi|67... 306 2e-80
>ref|XP_002319493.1| predicted protein [Populus trichocarpa] gi|222857869|gb|EEE95416.1|
predicted protein [Populus trichocarpa]
Length = 810
Score = 348 bits (893), Expect = 3e-93
Identities = 211/520 (40%), Positives = 284/520 (54%), Gaps = 53/520 (10%)
Frame = -2
Query: 1725 DDDFDLDYKAVRERSRTKSVIK----------DWVSDDSEPSDVEYTLSDEEKELLREAN 1576
D DF D RE+S+ S ++ D+VS+ S SD EYTLS+EE+E +REA+
Sbjct: 213 DGDFLADSPVAREKSKKTSGVRKRKFSVNSDSDFVSNGS--SDYEYTLSEEEREQVREAS 270
Query: 1575 KFLGISTTCSRDSSLNGKLHKDGTSKCLKPTPMERKGKQKVHELHIDTGKQVCGICFSEE 1396
+ G T R SS+ ++ ++G C + P+ RKGK+KV E + GKQVCGIC SEE
Sbjct: 271 QLYGELKTSLRSSSVGKRIQENG-DLCQQTKPVGRKGKEKVKEEKSELGKQVCGICLSEE 329
Query: 1395 RKGIVRGTLNCCSHYFCYACIMEWSKIESRCPLCKQRFVTISMPERSKLGVELRSLVIPI 1216
K +RGTL+CCSHYFC+ CIMEWSK+ESRCPLCKQRF TI+ RS +GV+LR++VI +
Sbjct: 330 DKRRLRGTLDCCSHYFCFTCIMEWSKVESRCPLCKQRFSTIAKNGRSAMGVDLRNMVIEV 389
Query: 1215 PTRDQVYQPTEEEVMGYLDPYDGVVCIECQEGGDDSLMLLCDICDSPSHTYCVGLGQEVP 1036
P RDQVYQPTEEE+ Y+DPY+ V+C EC EGGDD LMLLCD+CDS +HTYCVGLG++VP
Sbjct: 390 PMRDQVYQPTEEEIRSYIDPYENVICKECHEGGDDGLMLLCDLCDSSAHTYCVGLGRQVP 449
Query: 1035 EGNWYCKGCRISDPGSSNVLVQDPSLGTSSNSIPTYLTSQRMSVNDLDPTPQAVSALDPS 856
EGNWYC CR GS++ QDP +P S N P LDP+
Sbjct: 450 EGNWYCDDCRPVALGSTSSQAQDP--------LPDQWNSSNNIFNRPSPILNLDEGLDPN 501
Query: 855 LFRENEI--------LPSPRSIVGDDVHLVSPSGI-GVSTLSGRRRIHRQIRSMLSN-NR 706
L + L SPR + G D+H+ SP + G STLSGRR +HR IR++LSN N
Sbjct: 502 LESAPRLTIPQVSGSLSSPRFLTG-DIHVASPVSVAGASTLSGRRHLHRHIRTLLSNRNP 560
Query: 705 VSHTTEMPRRIDDNIESKIVAD---SEDEQLEKTTTQQAGPSASNGFHYDGFEVWTQDAS 535
++ + RID + + +D S+ + + +T Q E+ T + +
Sbjct: 561 SANMNPVANRIDVISAASLHSDFLNSQIDPVRETALQNLRTQ----------EIGTSEQT 610
Query: 534 PSS--LLEIDHTAAQSSNIEGNSSASQQS----------------------------NSV 445
P+ L DH ++ N + QS NS+
Sbjct: 611 PNKERLQANDHPSSSFQNRDSYYLTPNQSRRQTVQDPTITTADRPVNLTLWPDLMGINSI 670
Query: 444 FGFQQLQHHRSSLFSWPDDCEFPRQRRSSSSHFQVENPLE 325
GF+Q RS + PD Q R S + V+ L+
Sbjct: 671 PGFEQSHQFRSRSSTEPDGTLSSYQVREQSQFYDVKEQLQ 710
>ref|XP_002330183.1| predicted protein [Populus trichocarpa] gi|222871639|gb|EEF08770.1|
predicted protein [Populus trichocarpa]
Length = 735
Score = 342 bits (878), Expect = 2e-91
Identities = 193/383 (50%), Positives = 245/383 (63%), Gaps = 14/383 (3%)
Frame = -2
Query: 1725 DDDFDLDYKAVRERSRTKSVI---KDWVSDDSE-----PSDVEYTLSDEEKELLREANKF 1570
D DF D VRE+S+ S + K V+ DS+ SD +YT+S+EE+EL+REAN+F
Sbjct: 139 DGDFLADSSIVREKSKKHSGVRKRKFAVNSDSDFLSNGSSDYDYTISEEERELVREANQF 198
Query: 1569 LGISTTCSRDSSLNGKLHKDGTSKCLKPTPMERKGKQKVHELHIDTGKQVCGICFSEERK 1390
+ T S SS GK ++ C + P+ RKGK+KV E+ + G+QVCGIC SEE K
Sbjct: 199 GELKT--SLRSSSAGKRFQENGDLCEQTKPLGRKGKEKVDEVKSELGRQVCGICLSEEDK 256
Query: 1389 GIVRGTLNCCSHYFCYACIMEWSKIESRCPLCKQRFVTISMPERSKLGVELRSLVIPIPT 1210
RGTL+CCSHYFC+ CIMEWSK+ESRCPLCKQRF TI+ RS +GV+LR++VI +P
Sbjct: 257 RRFRGTLDCCSHYFCFTCIMEWSKVESRCPLCKQRFRTITKNGRSIVGVDLRNMVIQVPK 316
Query: 1209 RDQVYQPTEEEVMGYLDPYDGVVCIECQEGGDDSLMLLCDICDSPSHTYCVGLGQEVPEG 1030
RDQVYQPTEEE+ Y+DPY+ V+C EC EGGDD LMLLCD+CDS +HTYCVGLG++VPEG
Sbjct: 317 RDQVYQPTEEEIRSYIDPYENVICKECHEGGDDGLMLLCDLCDSSAHTYCVGLGRQVPEG 376
Query: 1029 NWYCKGCRISDPGSSNVLVQDPSLGTSSNSIPTYLTSQRMSVN---DLDPTPQAVSALD- 862
NWYC CR GSS+ QD SL N + +N LDP ++ L
Sbjct: 377 NWYCDDCRPVALGSSSSQTQD-SLPDQWNISSNIFNRPSLMLNLEEGLDPNLESSPRLTV 435
Query: 861 PSLFRENEILPSPRSIVGDDVHLVSP-SGIGVSTLSGRRRIHRQIRSMLSN-NRVSHTTE 688
P F L SPR GD+ H+ SP SG G STLSGRR IHR IR +LSN N ++
Sbjct: 436 PQAFGS---LSSPRFPTGDN-HVASPVSGAGASTLSGRRHIHRNIRILLSNMNPSTNMNP 491
Query: 687 MPRRIDDNIESKIVADSEDEQLE 619
M RID + + D + Q++
Sbjct: 492 MANRIDVISAASLRGDLSNSQID 514
>ref|XP_002278421.1| PREDICTED: uncharacterized protein LOC100240780 [Vitis vinifera]
Length = 733
Score = 335 bits (858), Expect = 4e-89
Identities = 195/428 (45%), Positives = 250/428 (58%), Gaps = 20/428 (4%)
Frame = -2
Query: 1734 VSSDDDFDLDYKAVRERSRTKSVIKDWVSDDSE-----PSDVEYTLSDEEKELLREANKF 1570
V +D DF + VRER K + + DSE SD E+T+S+EE+E +REA++F
Sbjct: 153 VDNDGDFIDERPVVRERKSHKRKRRLAPASDSEFVSSGSSDFEFTISEEEREQVREADEF 212
Query: 1569 LGISTTCSRDSSLNGKLHKDGTSKCLKPTPMERKGKQKVHELHIDTGKQVCGICFSEERK 1390
ST R +SL K ++ + P RKGK+KV ++ + GKQVCGIC SEE K
Sbjct: 213 CRRSTNNMRSASLPAKTIEE------ERKPPVRKGKEKVEDVKNEVGKQVCGICLSEEGK 266
Query: 1389 GIVRGTLNCCSHYFCYACIMEWSKIESRCPLCKQRFVTISMPERSKLGVELRSLVIPIPT 1210
VRGTL+CCSHYFC+ CIMEWSK+ESRCPLCKQRF+TIS P R+ G++LR ++I +P
Sbjct: 267 RRVRGTLDCCSHYFCFGCIMEWSKVESRCPLCKQRFMTISKPARANTGIDLRDVMIQVPE 326
Query: 1209 RDQVYQPTEEEVMGYLDPYDGVVCIECQEGGDDSLMLLCDICDSPSHTYCVGLGQEVPEG 1030
RDQVY P+EEE+ GYLDPY+ V+C EC +GGDD LMLLCD+CDSP+HTYCVGLG+EVPEG
Sbjct: 327 RDQVYLPSEEEIRGYLDPYENVICTECHQGGDDGLMLLCDLCDSPAHTYCVGLGREVPEG 386
Query: 1029 NWYCKGCRISDPGSSNVLVQDPSLGTSSNSIPTYLTSQRMSVNDLDPTPQAVSALDPSLF 850
NWYC+GCR S VQDP L+ R + N L P V + SL
Sbjct: 387 NWYCEGCRPSQ-------VQDP------------LSDHRTTQNTLSDRPSPVGNIGESLV 427
Query: 849 RENEILPSP-RSIVGDDV-------HLVSP-SGIGVSTLSGRRRIHRQIRSMLSNNRVSH 697
+L +P +G ++ SP S G STLSGRR IHRQI + SNNR+SH
Sbjct: 428 TSLSLLSTPFTQGIGINISPRYRNAEAASPVSASGASTLSGRRWIHRQIHQIRSNNRMSH 487
Query: 696 T------TEMPRRIDDNIESKIVADSEDEQLEKTTTQQAGPSASNGFHYDGFEVWTQDAS 535
P D + S+I D+ L+ T +Q + H E QD
Sbjct: 488 VAVRNIGNSAPNSGSDFLNSQI-----DQGLD-TASQHTKALETGTSHSTFLEESLQDNR 541
Query: 534 PSSLLEID 511
SL +D
Sbjct: 542 YPSLQNMD 549
>ref|XP_002512479.1| splicing factor, arginine/serine-rich 2,rnap interacting protein,
putative [Ricinus communis] gi|223548440|gb|EEF49931.1|
splicing factor, arginine/serine-rich 2,rnap interacting
protein, putative [Ricinus communis]
Length = 791
Score = 311 bits (797), Expect = 5e-82
Identities = 179/402 (44%), Positives = 245/402 (60%), Gaps = 21/402 (5%)
Frame = -2
Query: 1725 DDDFDLDYKAVRERSRTKSVIK---------DWVSDDSEPSDVEYTLSDEEKELLREANK 1573
+ +F D VR RS S + D++S S SD EYT+S+EE+E +RE +K
Sbjct: 201 EGEFIDDSAFVRARSSKNSSARSRYAVYSDSDFMSSGS--SDYEYTISEEEREQVREGSK 258
Query: 1572 FLGISTTCSRDSSLNGKLHKDGTSKCLKPTPMERKGKQKVHELHIDTGKQVCGICFSEER 1393
G+ T+ SS+ K + G C + + RKGK+KV E+ + GKQ+CGIC SEE
Sbjct: 259 LFGVKTSLRSSSSIR-KTQESG-DLCQQGKSLARKGKEKVKEVKPELGKQMCGICLSEED 316
Query: 1392 KGIVRGTLNCCSHYFCYACIMEWSKIESRCPLCKQRFVTISMPERSKLGVELRSLVIPIP 1213
K +RGTL+CCSHYFC+ CIMEWSK+ESRCPLCKQRF TI+ R+ +GVE R++VI +P
Sbjct: 317 KRRLRGTLDCCSHYFCFTCIMEWSKVESRCPLCKQRFKTITKNGRAAVGVEPRNVVIQVP 376
Query: 1212 TRDQVYQPTEEEVMGYLDPYDGVVCIECQEGGDDSLMLLCDICDSPSHTYCVGLGQEVPE 1033
RDQVYQP+EEE+ ++DPY+ V+C EC EGG+D LMLLCD+CDSP+HT+CVGLG++VPE
Sbjct: 377 KRDQVYQPSEEEIRSFIDPYENVICTECHEGGEDGLMLLCDLCDSPAHTFCVGLGRQVPE 436
Query: 1032 GNWYCKGCRISDPGSSNVLVQDPSLG-TSSNSIPTYLTSQRMSVNDLDPT--PQAVSALD 862
GNWYC+ CR GS++ DP ++N+I + + SV D T P A
Sbjct: 437 GNWYCEVCRPVALGSTSSQALDPMPDQRTTNNIFSRPSPDTNSVEGFDATSEPSPRLAFA 496
Query: 861 PSLFRENEILPSPRSIVGDDVHLVSP-SGIGVSTLSGRRRIHRQIRSMLSNNRVSHTTEM 685
P L SPR G DV SP SG G STLS RR++HR I++++S +R+ + M
Sbjct: 497 PGF----GSLSSPRFPAG-DVQAASPVSGAGGSTLSQRRQLHRHIQNLISMSRMHY---M 548
Query: 684 PRRIDDNIESKIVADSEDEQ--------LEKTTTQQAGPSAS 583
R D + + D + ++ + TQ+ G S S
Sbjct: 549 ANRTDGISAANLHIDLSNPHNDQCRETIVQNSRTQEIGASQS 590
>ref|NP_187218.1| RING/U-box protein [Arabidopsis thaliana]
gi|6714443|gb|AAF26130.1|AC011620_6 unknown protein
[Arabidopsis thaliana] gi|21539513|gb|AAM53309.1| unknown
protein [Arabidopsis thaliana] gi|27311925|gb|AAO00928.1|
unknown protein [Arabidopsis thaliana]
gi|332640753|gb|AEE74274.1| RING/U-box protein
[Arabidopsis thaliana]
Length = 883
Score = 306 bits (783), Expect = 2e-80
Identities = 171/359 (47%), Positives = 225/359 (62%), Gaps = 18/359 (5%)
Frame = -2
Query: 1725 DDDFDLDYKAVRERSRTKS----------VIKDWVSDDSEPSDVEYTLSDEEKELLREAN 1576
DDDF D R++++TKS V D S SD EYT+S+EE+E +REA
Sbjct: 305 DDDFVDDCLPARKKAKTKSSRPRPRRRCTVPSDSDVASSGESDYEYTISEEEREQIREAG 364
Query: 1575 KFLGISTTCS---RDSSLNGKLHKDGTSKCLKPTPMERKGKQKVHELHIDTGKQVCGICF 1405
L S + R +++N L + L+ +P+ +KG++KV + D K VCGIC
Sbjct: 365 SLLKSSVNHASSIRQTTVNKDLPQ------LRKSPV-KKGEKKVELVKRDVIKNVCGICL 417
Query: 1404 SEERKGIVRGTLNCCSHYFCYACIMEWSKIESRCPLCKQRFVTISMPERSKLGVELRSLV 1225
SEE ++GTL+CCSHYFC+ CIMEWSK+ESRCPLCKQRF TIS P RS GV+LR +V
Sbjct: 418 SEEDMRRLKGTLDCCSHYFCFTCIMEWSKVESRCPLCKQRFRTISKPARSTPGVDLREVV 477
Query: 1224 IPIPTRDQVYQPTEEEVMGYLDPYDGVVCIECQEGGDDSLMLLCDICDSPSHTYCVGLGQ 1045
IP+P RDQVYQPTEEE+ YLDPY+ ++C EC +G DD LMLLCD+CDS +HTYCVGLG+
Sbjct: 478 IPVPERDQVYQPTEEELRSYLDPYENIICTECHQGDDDGLMLLCDLCDSSAHTYCVGLGR 537
Query: 1044 EVPEGNWYCKGCRISDPGSSN-----VLVQDPSLGTSSNSIPTYLTSQRMSVNDLDPTPQ 880
EVPEGNWYC+GCR GS++ + Q G S P ++ Q V+ +
Sbjct: 538 EVPEGNWYCEGCRPVALGSASSQTHIISEQQRGSGFYSRPSPLVVSGQYQDVSLI----- 592
Query: 879 AVSALDPSLFRENEILPSPRSIVGDDVHLVSPSGIGVSTLSGRRRIHRQIRSMLSNNRV 703
VS P F E L SPR I D SPSG+G +TLS RR +HR I+++++ +R+
Sbjct: 593 -VSPRTP--FFNGENLFSPR-IPNGDAQGSSPSGLGATTLSRRRTLHRHIQNIINGDRL 647