BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00009675
         (841 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containi...   196   5e-48
ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containi...   196   5e-48
ref|XP_002512275.1| pentatricopeptide repeat-containing protein,...   186   6e-45
ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containi...   167   2e-39
ref|XP_002326124.1| predicted protein [Populus trichocarpa] gi|2...   167   4e-39

>ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  196 bits (498), Expect = 5e-48
 Identities = 111/227 (48%), Positives = 147/227 (64%), Gaps = 5/227 (2%)
 Frame = -3

Query: 668 CHNKVNFEAEAWFIKVICSVIVFRCSQKAKGAVDFSCLGYFETSLRSPLIAFEVIKRLND 489
           C  ++   +EAW +KV+C++     S  A       C GY   +L +P IAFEVIKR +D
Sbjct: 37  CDREIIRHSEAWLVKVVCTLFFRSHSLNA-------CFGYLSRNL-NPSIAFEVIKRFSD 88

Query: 488 PILSLKYFEYSRMRFEEQGFKHSGNTYNLLVRNLCHVGLHDAALKVIFD-----GHFAES 324
           P+L LK+FE+SR         H+ NTY+LL+RNLC VGL+D+A K++FD     G   +S
Sbjct: 89  PLLGLKFFEFSRTHLS---INHTFNTYDLLMRNLCKVGLNDSA-KIVFDCMRSDGILPDS 144

Query: 323 SILDFLVSSCGENGKFDIAKRVFVQAYNSKMRVSSFTYNCLLNILVKRNRVDEAVSFFRE 144
           SIL+ LVSS    GK D AK    + +   ++VS F YN LLN+LVK+N VDEAV  FRE
Sbjct: 145 SILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFRE 204

Query: 143 QHLRFGFCPDTCSFNIVIRGLCRIGDVGRAFEFFKDMESFHCSPDVV 3
            HL   F PD  SFNI+IRGLCRIG++ +AFEFF++M +F C PD+V
Sbjct: 205 -HLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIV 250


>ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  196 bits (498), Expect = 5e-48
 Identities = 111/227 (48%), Positives = 147/227 (64%), Gaps = 5/227 (2%)
 Frame = -3

Query: 668 CHNKVNFEAEAWFIKVICSVIVFRCSQKAKGAVDFSCLGYFETSLRSPLIAFEVIKRLND 489
           C  ++   +EAW +KV+C++     S  A       C GY   +L +P IAFEVIKR +D
Sbjct: 37  CDREIIRHSEAWLVKVVCTLFFRSHSLNA-------CFGYLSRNL-NPSIAFEVIKRFSD 88

Query: 488 PILSLKYFEYSRMRFEEQGFKHSGNTYNLLVRNLCHVGLHDAALKVIFD-----GHFAES 324
           P+L LK+FE+SR         H+ NTY+LL+RNLC VGL+D+A K++FD     G   +S
Sbjct: 89  PLLGLKFFEFSRTHLS---INHTFNTYDLLMRNLCKVGLNDSA-KIVFDCMRSDGILPDS 144

Query: 323 SILDFLVSSCGENGKFDIAKRVFVQAYNSKMRVSSFTYNCLLNILVKRNRVDEAVSFFRE 144
           SIL+ LVSS    GK D AK    + +   ++VS F YN LLN+LVK+N VDEAV  FRE
Sbjct: 145 SILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFRE 204

Query: 143 QHLRFGFCPDTCSFNIVIRGLCRIGDVGRAFEFFKDMESFHCSPDVV 3
            HL   F PD  SFNI+IRGLCRIG++ +AFEFF++M +F C PD+V
Sbjct: 205 -HLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIV 250


>ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548236|gb|EEF49727.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 532

 Score =  186 bits (472), Expect = 6e-45
 Identities = 108/234 (46%), Positives = 146/234 (62%), Gaps = 6/234 (2%)
 Frame = -3

Query: 686 FNAFTDCHNKVNFEAEAWFIKVICSVIV-FRCSQKAKGAVDFSCLGYFETSLRSPLIAFE 510
           F+ F+D    V  + EAWF+KVI  + V   CS       D + LGY    L  PL+AFE
Sbjct: 13  FHPFSDKEVIVKNQ-EAWFVKVIAILFVRSHCS-------DATSLGYLSEKLNDPLVAFE 64

Query: 509 VIKRLND-PILSLKYFEYSRMRFEEQGFKHSGNTYNLLVRNLCHVGLHDAALKVI----F 345
           VIKRLN+ P + LK+ E+ R+ F      H  +TY LL+R+LC +GLHD    VI     
Sbjct: 65  VIKRLNNNPQVGLKFMEFCRLNFS---LIHCFSTYELLIRSLCQMGLHDLVEMVIGYMRS 121

Query: 344 DGHFAESSILDFLVSSCGENGKFDIAKRVFVQAYNSKMRVSSFTYNCLLNILVKRNRVDE 165
           DGH  +S +L FLV+S  + GKFD+AK++ ++    + R+SSF YN LLN LVK  +V E
Sbjct: 122 DGHLIDSRVLGFLVTSFAQAGKFDLAKKLIIEVQGEEARISSFVYNYLLNELVKGGKVHE 181

Query: 164 AVSFFREQHLRFGFCPDTCSFNIVIRGLCRIGDVGRAFEFFKDMESFHCSPDVV 3
           A+  F+E +L F   P+T +FNI+IRGLCR+G+V + FE F  M+SF C PDVV
Sbjct: 182 AIFLFKE-NLAFHSPPNTWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVV 234


>ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Vitis vinifera]
          Length = 641

 Score =  167 bits (424), Expect = 2e-39
 Identities = 110/262 (41%), Positives = 150/262 (57%), Gaps = 11/262 (4%)
 Frame = -3

Query: 755 LAFQMTQIFM-----PISLTKVVHRNIHFNAFTDCHNK--VNFEAEAWFIKVICSVIVFR 597
           +A QMT +        +  +K+     H +A     N+  V    E W +KVIC++ V  
Sbjct: 29  VALQMTLLLFITRPSRVRASKIAIAQFHEHAVGISRNRPEVIQNPENWIVKVICTLCVRT 88

Query: 596 CSQKAKGAVDFSCLGYFETSLRSPLIAFEVIKRLNDPILSLKYFEYSRMRFEEQGFKHSG 417
            S  A       CL YF  +L +P IAFEV++ LN+P L+LK+F+ SR+        HS 
Sbjct: 89  HSLDA-------CLDYFSKTL-TPSIAFEVVRGLNNPELALKFFQLSRVNLN---LCHSF 137

Query: 416 NTYNLLVRNLCHVGLHDAALKVI----FDGHFAESSILDFLVSSCGENGKFDIAKRVFVQ 249
            TY+ L+R+L  +G H++A  V      DGH  ++S+L FLVSS  + GKF+IA+     
Sbjct: 138 RTYSFLLRSLSEMGFHESAKAVYDCMNIDGHSPDASVLGFLVSSATDAGKFNIAR----- 192

Query: 248 AYNSKMRVSSFTYNCLLNILVKRNRVDEAVSFFREQHLRFGFCPDTCSFNIVIRGLCRIG 69
            +   +  S   YN LLN LV+ N+VDEAV FFREQ    G   D+CSFNI+IRGLCRIG
Sbjct: 193 TWVDGVEFSLVVYNKLLNQLVRGNQVDEAVCFFREQMGLHGPF-DSCSFNILIRGLCRIG 251

Query: 68  DVGRAFEFFKDMESFHCSPDVV 3
            V +AFE F +M  F CSPDV+
Sbjct: 252 KVDKAFELFNEMRGFGCSPDVI 273


>ref|XP_002326124.1| predicted protein [Populus trichocarpa] gi|222833317|gb|EEE71794.1|
           predicted protein [Populus trichocarpa]
          Length = 512

 Score =  167 bits (422), Expect = 4e-39
 Identities = 87/181 (48%), Positives = 122/181 (67%), Gaps = 5/181 (2%)
 Frame = -3

Query: 530 SPLIAFEVIKRLNDPILSLKYFEYSRMRFEEQGFKHSGNTYNLLVRNLCHVGLHDAALKV 351
           +PLIAFEVIKR N+P +  K+ E+SR+        H  +TYNLL+R+LC +G HD  + +
Sbjct: 39  TPLIAFEVIKRFNNPKVGFKFLEFSRLNLN---VNHCYSTYNLLMRSLCQMGHHDL-VNI 94

Query: 350 IFD-----GHFAESSILDFLVSSCGENGKFDIAKRVFVQAYNSKMRVSSFTYNCLLNILV 186
           +FD     GH  +S +L FLV+   +   FD+ K++  +    ++R++SF YN LL++LV
Sbjct: 95  VFDYMGSDGHLPDSKLLGFLVTWMAQASDFDMVKKLLAEVQGKEVRINSFVYNNLLSVLV 154

Query: 185 KRNRVDEAVSFFREQHLRFGFCPDTCSFNIVIRGLCRIGDVGRAFEFFKDMESFHCSPDV 6
           K+N+V EA+  F+E +L     PDT +FNI+IRGLCR+G V RAFE FKDMESF C PDV
Sbjct: 155 KQNQVHEAIYLFKE-YLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDV 213

Query: 5   V 3
           V
Sbjct: 214 V 214



 Score = 60.1 bits (144), Expect = 6e-07
 Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
 Frame = -3

Query: 413 TYNLLVRNLCHVGLHDAALKVIFD----GHFAESSILDFLVSSCGENGKFDIAKRVFVQA 246
           T+N+L+R LC VG  D A +V  D    G   +    + L++   +  +      +F + 
Sbjct: 180 TFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEI 239

Query: 245 YN-SKMRVSSFTYNCLLNILVKRNRVDEAVSFFREQHLRFGFCPDTCSFNIVIRGLCRIG 69
            + S       TY  +++   K  ++ EA + F E  +R G  P+  +FN++I G  +IG
Sbjct: 240 QSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEM-MRSGIQPNVITFNVLIDGFGKIG 298

Query: 68  DVGRAFEFFKDMESFHCSPDVV 3
           ++  A   ++ M  F CS DVV
Sbjct: 299 NIAEAEAMYRKMAYFDCSADVV 320