BLASTX nr result
ID: Coptis23_contig00009662
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00009662
(1528 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002281594.1| PREDICTED: cleavage and polyadenylation spec... 697 0.0
ref|XP_003534764.1| PREDICTED: cleavage and polyadenylation spec... 683 0.0
ref|XP_003546247.1| PREDICTED: cleavage and polyadenylation spec... 681 0.0
ref|XP_002523201.1| conserved hypothetical protein [Ricinus comm... 671 0.0
ref|XP_004141524.1| PREDICTED: cleavage and polyadenylation spec... 655 0.0
>ref|XP_002281594.1| PREDICTED: cleavage and polyadenylation specificity factor
CPSF30-like [Vitis vinifera]
Length = 673
Score = 697 bits (1798), Expect = 0.0
Identities = 355/507 (70%), Positives = 385/507 (75%), Gaps = 12/507 (2%)
Frame = +2
Query: 44 RRSFRQTVCRHWLRGLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEEV 223
RRSFRQTVCRHWLR LCMKGDACGFLHQYDK+RMPVCRFFRLYGECREQDCVYKHTNE++
Sbjct: 57 RRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHTNEDI 116
Query: 224 KECNMYRLGFCPNGPDCRYRHAKLPGPPPPVEEVFQKIQHLSS---GTNNRFFQPRNGGY 394
KECNMY+LGFCPNG DCRYRHAKLPGPPP +EEVFQKIQ LSS G++NRF+Q RN Y
Sbjct: 117 KECNMYKLGFCPNGSDCRYRHAKLPGPPPTMEEVFQKIQQLSSFNYGSSNRFYQNRNP-Y 175
Query: 395 GQQAERYQVPQGSSMVNQG-FKQSTTAESAXXXXXXXXXXXXXXXXVNQTQLPNLPDG-- 565
QQ E+ Q+ QGS+ VN G +S+T E+ V+QT + NLP+G
Sbjct: 176 NQQTEKSQILQGSNAVNLGTVAKSSTTEAINVQQQQVQPPQQQ---VSQTPMQNLPNGLP 232
Query: 566 -QGNRMASPLPPGLSRYFVVKSCNRENLELSAQQGVWATQRSNEAKLNEAFDSVENVILI 742
Q N+ ASPLP G+SRYF+VKSCNRENLELS QQGVWATQRSNEAKLNEAFDSVENVILI
Sbjct: 233 NQANKTASPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSVENVILI 292
Query: 743 FSVNRTRHFQGCAKMTSKIGEIAGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLR 922
FSVNRTRHFQGCAKMTSKIG GGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLR
Sbjct: 293 FSVNRTRHFQGCAKMTSKIGGFVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLR 352
Query: 923 NPRNDNLPVKISRDCQELEPFIGQQLASLLYLEPDSELMAISVAAESKRKEEKAMGVNPD 1102
NP N+NLPVKISRDCQELEP IG+QLASLLYLEPDSELMAIS+AAESKR+EEKA GVNPD
Sbjct: 353 NPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISLAAESKREEEKAKGVNPD 412
Query: 1103 DGAENPDIVPF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMWPPHMHPAYGGRP 1279
+G ENPDIVPF MWPPHM A G RP
Sbjct: 413 NGGENPDIVPFEDNEEEEEEESEEEEESFGQALGPAAQGRGRGRGIMWPPHMPLARGARP 472
Query: 1280 IPGVRGFPPVVMGADGFSYGSVPPDRLPMQDFF---PRPFAPYGPRFSGDFSAIGQNPAM 1450
IP +RGFPPV+MGADGFSY +VPPD M D F PR F PYGPRFSGDF+ PA
Sbjct: 473 IPSMRGFPPVMMGADGFSYSAVPPDGFAMPDIFGVGPRAFPPYGPRFSGDFT----GPAS 528
Query: 1451 GFNHGRPSQPGPFFPPNGLG-MMGPGR 1528
G QPG FP +G G MMGPGR
Sbjct: 529 GMMFPGRGQPGAVFPASGYGMMMGPGR 555
>ref|XP_003534764.1| PREDICTED: cleavage and polyadenylation specificity factor
CPSF30-like [Glycine max]
Length = 681
Score = 683 bits (1763), Expect = 0.0
Identities = 349/506 (68%), Positives = 376/506 (74%), Gaps = 11/506 (2%)
Frame = +2
Query: 44 RRSFRQTVCRHWLRGLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEEV 223
RRSFRQTVCRHWLR LCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNE++
Sbjct: 67 RRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDI 126
Query: 224 KECNMYRLGFCPNGPDCRYRHAKLPGPPPPVEEVFQKIQHLSS---GTNNRFFQPRNGGY 394
KECNMY+LGFCPNGPDCRYRHAK PGPPPPVEEV QKIQHL S ++N+FFQ R Y
Sbjct: 127 KECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLQKIQHLYSYNYNSSNKFFQQRGASY 186
Query: 395 GQQAERYQVPQGSSMVNQGFKQSTTAESAXXXXXXXXXXXXXXXXVNQTQLPNLPDGQ-- 568
QQAE+ +PQG++ NQG + VNQ+Q+ N+ +GQ
Sbjct: 187 NQQAEKPLLPQGNNSTNQGVT-GNPLPAELGNAQPQQQVQQSQQQVNQSQMQNVANGQPN 245
Query: 569 -GNRMASPLPPGLSRYFVVKSCNRENLELSAQQGVWATQRSNEAKLNEAFDSVENVILIF 745
NR A+PLP G+SRYF+VKSCNRENLELS QQGVWATQRSNE+KLNEAFDSVENVILIF
Sbjct: 246 QANRTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIF 305
Query: 746 SVNRTRHFQGCAKMTSKIGEIAGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRN 925
SVNRTRHFQGCAKMTSKIG GGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRN
Sbjct: 306 SVNRTRHFQGCAKMTSKIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRN 365
Query: 926 PRNDNLPVKISRDCQELEPFIGQQLASLLYLEPDSELMAISVAAESKRKEEKAMGVNPDD 1105
P N+NLPVKISRDCQELEP IG+QLASLLYLEPDSELMAISVAAESKR+EEKA GVNPD+
Sbjct: 366 PYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISVAAESKREEEKAKGVNPDN 425
Query: 1106 GAENPDIVPF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMWPPHMHPAYGGRPI 1282
G ENPDIVPF MWPPHM G RP+
Sbjct: 426 GGENPDIVPFEDNEEEEEEESDEEEESFGHGVGPAGQGRGRGRGMMWPPHMPLGRGARPM 485
Query: 1283 PGVRGFPPVVMGADGFSYGSVPPDRLPMQDFF---PRPFAPYGPRFSGDFSAIGQNPAMG 1453
PG++GF PV+MG DG SYG V PD M D F PR FAPYGPRFSGDF G PA
Sbjct: 486 PGMQGFNPVMMG-DGLSYGPVGPDGFGMPDLFGVGPRGFAPYGPRFSGDF---GGPPAAM 541
Query: 1454 FNHGRPSQPGPFFPPNGLGMM-GPGR 1528
GRPSQPG FP G GMM PGR
Sbjct: 542 MFRGRPSQPG-MFPGGGFGMMLNPGR 566
>ref|XP_003546247.1| PREDICTED: cleavage and polyadenylation specificity factor
CPSF30-like [Glycine max]
Length = 691
Score = 681 bits (1756), Expect = 0.0
Identities = 351/510 (68%), Positives = 380/510 (74%), Gaps = 15/510 (2%)
Frame = +2
Query: 44 RRSFRQTVCRHWLRGLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEEV 223
RRSFRQTVCRHWLR LCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNE++
Sbjct: 67 RRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDI 126
Query: 224 KECNMYRLGFCPNGPDCRYRHAKLPGPPPPVEEVFQKIQHLSS---GTNNRFFQPRNGGY 394
KECNMY+LGFCPNGPDCRYRHAK PGPPPPVEEV QKIQHL S ++N+FFQ R Y
Sbjct: 127 KECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLQKIQHLFSYNYNSSNKFFQQRGASY 186
Query: 395 GQQAERYQVPQGSSMVNQGFK-QSTTAESAXXXXXXXXXXXXXXXXVNQTQLPNLPDGQ- 568
QQAE+ Q+PQG++ NQG + AES VNQ+Q+ N+ +GQ
Sbjct: 187 NQQAEKPQLPQGTNSTNQGVTGKPLPAESGNAQPQQQVQQSQQQ--VNQSQMQNVANGQP 244
Query: 569 --GNRMASPLPPGLSRYFVVKSCNRENLELSAQQGVWATQRSNEAKLNEAFDSVENVILI 742
NR A+PLP G+SRYF+VKSCNRENLELS QQGVWATQRSNE+KLNEAFDSVENVIL+
Sbjct: 245 NQANRTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILV 304
Query: 743 FSVNRTRHFQGCAKMTSKIGEIAGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLR 922
FSVNRTRHFQGCAKMTS+IG GGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLR
Sbjct: 305 FSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLR 364
Query: 923 NPRNDNLPVKISRDCQELEPFIGQQLASLLYLEPDSELMAISVAAESKRKEEKAMGVNPD 1102
NP N+NLPVKISRDCQELEP IG+QLASLLYLEPDSELMAISVAAESKR+EEKA GVNPD
Sbjct: 365 NPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISVAAESKREEEKAKGVNPD 424
Query: 1103 DGAENPDIVPF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMWPPHMHPAYGGRP 1279
+G ENPDIVPF MWPPHM G RP
Sbjct: 425 NGGENPDIVPFEDNEEEEEEESDEEEESFSHGVGPAGQGRGRGRGMMWPPHMPLGRGARP 484
Query: 1280 IPGVRGFPPVVMGADGFSY---GSVPPDRLPMQDFF---PRPFAPYGPRFSGDFSAIGQN 1441
+PG++GF PV+MG DG SY G V PD M D F PR FAPYGPRFSGDF G
Sbjct: 485 MPGMQGFNPVMMG-DGLSYGPVGPVGPDGFGMPDLFGVGPRGFAPYGPRFSGDF---GGP 540
Query: 1442 PAMGFNHGRPSQPGPFFPPNGLG-MMGPGR 1528
PA GRPSQPG FP G G MM PGR
Sbjct: 541 PAAMMFRGRPSQPG-MFPSGGFGMMMNPGR 569
>ref|XP_002523201.1| conserved hypothetical protein [Ricinus communis]
gi|223537608|gb|EEF39232.1| conserved hypothetical
protein [Ricinus communis]
Length = 702
Score = 671 bits (1732), Expect = 0.0
Identities = 340/511 (66%), Positives = 371/511 (72%), Gaps = 16/511 (3%)
Frame = +2
Query: 44 RRSFRQTVCRHWLRGLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEEV 223
RRSFRQTVCRHWLR LCMKGDACGFLHQYDK+RMPVCRFFRLYGECREQDCVYKHTNE++
Sbjct: 70 RRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHTNEDI 129
Query: 224 KECNMYRLGFCPNGPDCRYRHAKLPGPPPPVEEVFQKIQHLSS---GTNNRFFQPRNGGY 394
KECNMY+LGFCPNGPDCRYRHAKLPGPPPPVEEV QKIQ L+S G++N+FFQ R G+
Sbjct: 130 KECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLNSYNYGSSNKFFQQRGAGF 189
Query: 395 GQQAERYQVPQGSSMVNQGFK------QSTTAESAXXXXXXXXXXXXXXXXVNQTQLPNL 556
Q A++ Q QG + + QG +S + QT NL
Sbjct: 190 QQHADKSQFSQGPNNMGQGMAAKPPGTESANVQQPQQQQPQPGQGQQSQQQATQTPTQNL 249
Query: 557 PDGQ---GNRMASPLPPGLSRYFVVKSCNRENLELSAQQGVWATQRSNEAKLNEAFDSVE 727
P+GQ NR A PLP G+SRYF+VKSCNRENLELS QQGVWATQRSNEAKLNEAFDS E
Sbjct: 250 PNGQPNQANRTAIPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAE 309
Query: 728 NVILIFSVNRTRHFQGCAKMTSKIGEIAGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHK 907
NVILIFSVNRTRHFQGCAKMTSKIG GGGNWKYAHGTAHYGRNFSVKWLKLCELSFHK
Sbjct: 310 NVILIFSVNRTRHFQGCAKMTSKIGASVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHK 369
Query: 908 TRHLRNPRNDNLPVKISRDCQELEPFIGQQLASLLYLEPDSELMAISVAAESKRKEEKAM 1087
TRHLRNP N+NLPVKISRDCQELEP +G QLA LLY EPDSELMAIS+AAE+KR+EEKA
Sbjct: 370 TRHLRNPYNENLPVKISRDCQELEPSVGGQLACLLYDEPDSELMAISLAAEAKREEEKAK 429
Query: 1088 GVNPDDGAENPDIVPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMWPPHMHPAY 1267
GVNP++G +NPDIVPF + PHM A
Sbjct: 430 GVNPENGGDNPDIVPFEDNEEEEEEESEEEEESFGQALGAPGQGRGRGRGIIWPHMPLAR 489
Query: 1268 GGRPIPGVRGFPPVVMGADGFSYGSVPPDRLPMQDFF---PRPFAPYGPRFSGDFSAIGQ 1438
G RPIPG+RGFPP++MGAD FSYG V PD M D F PR F PY PRFSGDF+ G
Sbjct: 490 GARPIPGMRGFPPMMMGADSFSYGPVTPDGFGMPDLFGVAPRGFTPYAPRFSGDFT--GA 547
Query: 1439 NPAMGFNHGRPSQPGPFFPPNGLG-MMGPGR 1528
M F GRP QPG FP G G MMGPGR
Sbjct: 548 ASGMMF-PGRPPQPGGVFPNGGFGMMMGPGR 577
>ref|XP_004141524.1| PREDICTED: cleavage and polyadenylation specificity factor
CPSF30-like [Cucumis sativus]
Length = 707
Score = 655 bits (1691), Expect = 0.0
Identities = 332/510 (65%), Positives = 370/510 (72%), Gaps = 14/510 (2%)
Frame = +2
Query: 41 SRRSFRQTVCRHWLRGLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEE 220
+RRSFRQTVCRHWLR LCMKGDACGFLHQYDK+RMP+CRFFRLYGECREQDCVYKHTNE+
Sbjct: 71 NRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQDCVYKHTNED 130
Query: 221 VKECNMYRLGFCPNGPDCRYRHAKLPGPPPPVEEVFQKIQHLSS---GTNNRFFQPRNGG 391
+KECNMY+ GFCPNGPDCRYRHAKLPGPPPP+EE+ QKIQHL S G +N+FF R G
Sbjct: 131 IKECNMYKFGFCPNGPDCRYRHAKLPGPPPPLEEILQKIQHLGSYNYGPSNKFFTQRGVG 190
Query: 392 YGQQAERYQVPQGSSMVNQGFKQSTTAESAXXXXXXXXXXXXXXXXVNQTQLPNLPDGQG 571
QQ E+ Q PQ ++V QG +A A +QT + +L +GQ
Sbjct: 191 LSQQNEKSQFPQVPALVTQGVTGKPSA--AESVNVQQQQGQQSAPQASQTPVQSLSNGQP 248
Query: 572 NRM---ASPLPPGLSRYFVVKSCNRENLELSAQQGVWATQRSNEAKLNEAFDSVENVILI 742
N++ A+ LP G+SRYF+VKSCNRENLELS QQGVWATQRSNEAKLNEAFDS +NVILI
Sbjct: 249 NQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSADNVILI 308
Query: 743 FSVNRTRHFQGCAKMTSKIGEIAGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLR 922
FSVNRTRHFQGCAKM S+IG GGNWKYAHGT HYG+NFS+KWLKLCELSF KTRHLR
Sbjct: 309 FSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTPHYGQNFSLKWLKLCELSFQKTRHLR 368
Query: 923 NPRNDNLPVKISRDCQELEPFIGQQLASLLYLEPDSELMAISVAAESKRKEEKAMGVNPD 1102
NP N+NLPVKISRDCQELEP +G+QLASLLYLEPD ELMA+SVAAESKR+EEKA GVNPD
Sbjct: 369 NPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDGELMAVSVAAESKREEEKAKGVNPD 428
Query: 1103 DGAENPDIVPF--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMWPPHMHPAYGGR 1276
G+ENPDIVPF MWPPHM G R
Sbjct: 429 IGSENPDIVPFEDNEEEEEEESEEEEEESFGQSAGLPPQGRGRGRGMMWPPHMPMGRGAR 488
Query: 1277 PIPGVRGFPPVVMGADGFSYGSVPPDRLPMQDFF---PRPFAPYG--PRFSGDFSAIGQN 1441
P G++GFPP +MG DG SYG V PD PM D F PR F PYG PRFSGDF +G
Sbjct: 489 PFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMTPRGFGPYGPTPRFSGDF--MGPP 546
Query: 1442 PAMGFNHGRPSQPGPFFPPNGLG-MMGPGR 1528
AM F GRPSQP FPP+G G MMG GR
Sbjct: 547 TAMMF-RGRPSQPAAMFPPSGFGMMMGQGR 575