BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00009637
         (1206 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283557.1| PREDICTED: general transcription factor IIE ...   407   e-111
ref|XP_002299546.1| predicted protein [Populus trichocarpa] gi|2...   396   e-108
ref|XP_002509755.1| Transcription initiation factor IIE subunit ...   396   e-108
ref|XP_004146528.1| PREDICTED: general transcription factor IIE ...   392   e-106
tpg|DAA36096.1| TPA: hypothetical protein ZEAMMB73_089157 [Zea m...   379   e-102

>ref|XP_002283557.1| PREDICTED: general transcription factor IIE subunit 2 [Vitis
            vinifera] gi|297742556|emb|CBI34705.3| unnamed protein
            product [Vitis vinifera]
          Length = 285

 Score =  407 bits (1046), Expect = e-111
 Identities = 212/290 (73%), Positives = 233/290 (80%)
 Frame = -3

Query: 1039 SLQESLNKFKQQQGKVQSTLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPVAVVQKAP 860
            +LQESL KFK+QQ K QSTLT                                A   K P
Sbjct: 2    ALQESLAKFKKQQEKCQSTLTSIAAKAGSSKPTVPQKFTP-------------AAPTKPP 48

Query: 859  SPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLFDTRKAFTAEQINEACYVDIHNNKA 680
            +PAVKFSNDTERLQHINSIRK+PVGAQIKRVIDLL +TR+AFT EQINEACYVD + NKA
Sbjct: 49   TPAVKFSNDTERLQHINSIRKAPVGAQIKRVIDLLLETRQAFTPEQINEACYVDTNANKA 108

Query: 679  VFDSLRNNPKVRYEGKYFSYKSKHDLKHKEDLLRLVRKFPEGIAVIDLKDAYTTIMEDLQ 500
            VFDSLRNNPKV Y+GK F+YKSKHDLK +  LL LVRKFPEGIAVIDLKD+Y ++MEDLQ
Sbjct: 109  VFDSLRNNPKVSYDGKRFAYKSKHDLKDRSQLLVLVRKFPEGIAVIDLKDSYPSVMEDLQ 168

Query: 499  AMKAGGLIWLLSNFDSQEDIAYPNDPRVLLKVDDDLKQFFRGIELPRDMIDIEKDLQKNG 320
            A+KA G +WLLSNFDSQEDIAYPNDPRV +KVDDDLKQFFR IELPRDM+DIEKDLQKNG
Sbjct: 169  ALKAAGQVWLLSNFDSQEDIAYPNDPRVPIKVDDDLKQFFRTIELPRDMLDIEKDLQKNG 228

Query: 319  MKPATNTARRRAMAQVHGIAPKSKAKKKQRDISKRTKLTNAHLPELFRNL 170
            MKPATNTA+RRAMAQVHGIA KSK KKK+ +ISKRTKLTNAHLPELF+NL
Sbjct: 229  MKPATNTAKRRAMAQVHGIASKSKPKKKKHEISKRTKLTNAHLPELFQNL 278


>ref|XP_002299546.1| predicted protein [Populus trichocarpa] gi|222846804|gb|EEE84351.1|
            predicted protein [Populus trichocarpa]
          Length = 284

 Score =  396 bits (1018), Expect = e-108
 Identities = 202/290 (69%), Positives = 232/290 (80%)
 Frame = -3

Query: 1039 SLQESLNKFKQQQGKVQSTLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPVAVVQKAP 860
            +LQE L++FK+QQ K QSTLT                                +   + P
Sbjct: 2    ALQEQLDRFKKQQEKCQSTLTSIAKSRPSKSSLTQKTVAVAPAP---------STSARTP 52

Query: 859  SPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLFDTRKAFTAEQINEACYVDIHNNKA 680
            +PAVKFSNDTERLQHINSIRK+P GAQIKRVIDLL +TR+AFT EQIN+ CYVD+++NKA
Sbjct: 53   APAVKFSNDTERLQHINSIRKAPAGAQIKRVIDLLLETRQAFTPEQINDHCYVDMNSNKA 112

Query: 679  VFDSLRNNPKVRYEGKYFSYKSKHDLKHKEDLLRLVRKFPEGIAVIDLKDAYTTIMEDLQ 500
            VFDSLRNNPKV Y+GK FSYKSKHDLK K  LL L+RKFPEGIAVIDLKD+Y ++M+DLQ
Sbjct: 113  VFDSLRNNPKVHYDGKRFSYKSKHDLKDKSQLLVLIRKFPEGIAVIDLKDSYPSVMDDLQ 172

Query: 499  AMKAGGLIWLLSNFDSQEDIAYPNDPRVLLKVDDDLKQFFRGIELPRDMIDIEKDLQKNG 320
            A+KA G IWLLSNFDSQEDIAYPNDPR+++KVDDDLKQ FRGIELPRDM+DIEKDLQKNG
Sbjct: 173  ALKAVGQIWLLSNFDSQEDIAYPNDPRMVIKVDDDLKQLFRGIELPRDMLDIEKDLQKNG 232

Query: 319  MKPATNTARRRAMAQVHGIAPKSKAKKKQRDISKRTKLTNAHLPELFRNL 170
            MKPATNTA+RRA AQV GI+ K KAKKK+ +ISKRTKLTNAHLPELF+NL
Sbjct: 233  MKPATNTAKRRAAAQVQGISTKQKAKKKKHEISKRTKLTNAHLPELFKNL 282


>ref|XP_002509755.1| Transcription initiation factor IIE subunit beta, putative [Ricinus
            communis] gi|223549654|gb|EEF51142.1| Transcription
            initiation factor IIE subunit beta, putative [Ricinus
            communis]
          Length = 282

 Score =  396 bits (1017), Expect = e-108
 Identities = 201/289 (69%), Positives = 232/289 (80%)
 Frame = -3

Query: 1036 LQESLNKFKQQQGKVQSTLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPVAVVQKAPS 857
            LQE LNKFK+QQ K Q+TLT                              P  ++ + P 
Sbjct: 3    LQEQLNKFKRQQEKCQTTLTSIAAKAGSHKPSITPKIVA-----------PSPIIPRTPG 51

Query: 856  PAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLFDTRKAFTAEQINEACYVDIHNNKAV 677
            PAVKFSNDTERLQHI+SIRK+PVGAQIKRVIDLLF+TR+AFT EQINEACYVD+++NKAV
Sbjct: 52   PAVKFSNDTERLQHIHSIRKAPVGAQIKRVIDLLFETRQAFTPEQINEACYVDVNSNKAV 111

Query: 676  FDSLRNNPKVRYEGKYFSYKSKHDLKHKEDLLRLVRKFPEGIAVIDLKDAYTTIMEDLQA 497
            FDSLRNNPKV Y+G++FSYKSKHDLK K+ LL L+R+F EGIAVIDLKDAY T+MEDLQA
Sbjct: 112  FDSLRNNPKVHYDGRHFSYKSKHDLKDKKQLLYLIREFKEGIAVIDLKDAYPTVMEDLQA 171

Query: 496  MKAGGLIWLLSNFDSQEDIAYPNDPRVLLKVDDDLKQFFRGIELPRDMIDIEKDLQKNGM 317
            +KA G IWLLSNFDSQEDIAYPNDP+ ++KVDD+LK  FR IELPRDM+DIEKDLQKNGM
Sbjct: 172  LKAAGGIWLLSNFDSQEDIAYPNDPKAVIKVDDELKVKFREIELPRDMLDIEKDLQKNGM 231

Query: 316  KPATNTARRRAMAQVHGIAPKSKAKKKQRDISKRTKLTNAHLPELFRNL 170
            KPATNTA+RRA AQV GI+ K K KKK ++ISK+TKLTNAHLPELF+NL
Sbjct: 232  KPATNTAKRRAAAQVQGISTKPKTKKKTKEISKKTKLTNAHLPELFQNL 280


>ref|XP_004146528.1| PREDICTED: general transcription factor IIE subunit 2-like [Cucumis
            sativus] gi|449499921|ref|XP_004160955.1| PREDICTED:
            general transcription factor IIE subunit 2-like [Cucumis
            sativus]
          Length = 277

 Score =  392 bits (1006), Expect = e-106
 Identities = 201/289 (69%), Positives = 231/289 (79%)
 Frame = -3

Query: 1039 SLQESLNKFKQQQGKVQSTLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPVAVVQKAP 860
            +LQE L++FK+QQ + QSTL+                              P A + + P
Sbjct: 2    ALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPA------------PAASIARPP 49

Query: 859  SPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLFDTRKAFTAEQINEACYVDIHNNKA 680
            +PAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLL +TR+AFT EQINEACYVDI++NKA
Sbjct: 50   APAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKA 109

Query: 679  VFDSLRNNPKVRYEGKYFSYKSKHDLKHKEDLLRLVRKFPEGIAVIDLKDAYTTIMEDLQ 500
            V+DSLRNNPKV Y+G+ FSYKSKHDLK K  LL LVRKFPEGIAVIDLKDAY ++MEDLQ
Sbjct: 110  VYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQ 169

Query: 499  AMKAGGLIWLLSNFDSQEDIAYPNDPRVLLKVDDDLKQFFRGIELPRDMIDIEKDLQKNG 320
            A+KA G +WLLSNFDSQEDIAYPNDPR+ +KVDDDLKQ FR IELPRDM+D+EKDLQKNG
Sbjct: 170  ALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNG 229

Query: 319  MKPATNTARRRAMAQVHGIAPKSKAKKKQRDISKRTKLTNAHLPELFRN 173
            MKPATNTA+RRA AQ H  + K K KKK+++ISKRTKLTNAHLPELF+N
Sbjct: 230  MKPATNTAKRRANAQ-HVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 277


>tpg|DAA36096.1| TPA: hypothetical protein ZEAMMB73_089157 [Zea mays]
          Length = 292

 Score =  379 bits (972), Expect = e-102
 Identities = 191/290 (65%), Positives = 225/290 (77%)
 Frame = -3

Query: 1036 LQESLNKFKQQQGKVQSTLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPVAVVQKAPS 857
            L++SL+KFKQQQ + QS+L                                   V   PS
Sbjct: 16   LKDSLSKFKQQQERCQSSLASIAASTSKPKHRAQPAHAPN--------------VPARPS 61

Query: 856  PAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLFDTRKAFTAEQINEACYVDIHNNKAV 677
              +KFSNDTERLQHINSIRKSPVGAQIK VI+LL+ TR+AFTAEQINEA YVDIH NKAV
Sbjct: 62   QPIKFSNDTERLQHINSIRKSPVGAQIKLVIELLYKTRQAFTAEQINEATYVDIHGNKAV 121

Query: 676  FDSLRNNPKVRYEGKYFSYKSKHDLKHKEDLLRLVRKFPEGIAVIDLKDAYTTIMEDLQA 497
            FDSLRNNPKV Y+G+ FSYKSKHDLK K+ LL L+RKFPEG+AV+++KDAY+ ++EDLQA
Sbjct: 122  FDSLRNNPKVSYDGRRFSYKSKHDLKGKDQLLVLIRKFPEGLAVVEVKDAYSNVLEDLQA 181

Query: 496  MKAGGLIWLLSNFDSQEDIAYPNDPRVLLKVDDDLKQFFRGIELPRDMIDIEKDLQKNGM 317
            +KA G +WLLSN DSQEDI YPNDP+  +KVDDDLKQ FR IELPRDM+DIEK+LQKNG 
Sbjct: 182  LKAAGEVWLLSNMDSQEDIVYPNDPKAKIKVDDDLKQLFREIELPRDMVDIEKELQKNGF 241

Query: 316  KPATNTARRRAMAQVHGIAPKSKAKKKQRDISKRTKLTNAHLPELFRNLN 167
            KP TNTA+RRA AQ++G+ PK+K KKKQR+I+KRTKLTNAHLPELF+NLN
Sbjct: 242  KPMTNTAKRRAAAQINGVKPKAKPKKKQREITKRTKLTNAHLPELFQNLN 291