BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00009607
         (759 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003528396.1| PREDICTED: KH domain-containing protein At4g...   148   1e-33
ref|XP_002269250.1| PREDICTED: KH domain-containing protein At4g...   147   3e-33
ref|XP_002323932.1| predicted protein [Populus trichocarpa] gi|2...   145   9e-33
ref|XP_002522689.1| Poly(rC)-binding protein, putative [Ricinus ...   144   2e-32
ref|XP_004165366.1| PREDICTED: KH domain-containing protein At4g...   141   2e-31

>ref|XP_003528396.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
           max]
          Length = 591

 Score =  148 bits (373), Expect = 1e-33
 Identities = 85/217 (39%), Positives = 122/217 (56%), Gaps = 12/217 (5%)
 Frame = -1

Query: 723 NDNPSSTN---KRRCRQPNHVAFRLLCHVSKSGAVIGKSGSIVKLLEQETGARIQMDEVI 553
           N NP+ +N    R      HV FRLLCH S+ GA+IGKSG ++K L++ TGA+I++++  
Sbjct: 5   NSNPNHSNGHVNRSRPYTTHVTFRLLCHASRVGAIIGKSGVLIKTLQEATGAKIRIEDAP 64

Query: 552 HGCQERVIHISSPELPKKTITLKGXXXXXXXXXXXXXVTSAQHGLIRVLE---------V 400
               +RVI +S+P                        V++AQ  L++V +          
Sbjct: 65  PDSPDRVILVSAPAAASD-----------------GEVSTAQVALLKVFDRVLDVAAETA 107

Query: 399 GAEVFPTINNCRLLADTSQIGYMIGKSGSRIKSIEKDIGARIRVSVERCPTCALPNDELI 220
           G EV   + +CRLLADTSQ+G +IGK+G  ++ I  D G +IRV  E  P C  P+DE++
Sbjct: 108 GTEVGDRVVSCRLLADTSQVGAVIGKAGKVVEKIRMDTGCKIRVLNEGLPACTAPSDEIV 167

Query: 219 EITGDSLAVKKATLAVSQCLQASPPLDRAQMAGSNSF 109
           E+ G   +VKKA +AVS CLQ  PP DR +M GS  +
Sbjct: 168 EVEGQLTSVKKALVAVSGCLQDCPPPDRTKMTGSRHY 204



 Score = 80.5 bits (197), Expect = 4e-13
 Identities = 52/195 (26%), Positives = 99/195 (50%), Gaps = 1/195 (0%)
 Frame = -1

Query: 672 VAFRLLCHVSKSGAVIGKSGSIVKLLEQETGARIQMDEVIHGCQERVIHISSPELPKKTI 493
           V FR++C   + GAVIGK GSIV+ L+ E+GA I     +  C++R++ I++ E   ++ 
Sbjct: 270 VTFRIICSNDRVGAVIGKGGSIVRALQNESGAIISFGPSLVECEDRLVTITASEQNPES- 328

Query: 492 TLKGXXXXXXXXXXXXXVTSAQHGLIRVLEVGAEVFPTINNCRLLADTSQIGYMIGKSGS 313
                              S + G+ + L++G++    +   +L+  ++Q+G ++GK G+
Sbjct: 329 ----RYSPAQKAVVLVFSKSVEAGVEKGLDMGSKKESYV-TAQLVVPSNQVGCLLGKGGA 383

Query: 312 RIKSIEKDIGARIRV-SVERCPTCALPNDELIEITGDSLAVKKATLAVSQCLQASPPLDR 136
            +  + K  GA IRV   ++ P C   ND+L++I+G+   V+ A    +  L+ +  +  
Sbjct: 384 IVSEMRKATGANIRVIGNDKVPKCVSDNDQLVQISGEFSNVQAAIYNATGRLRDNLFVST 443

Query: 135 AQMAGSNSFMAAADG 91
               G+ S  +   G
Sbjct: 444 QNSGGARSLSSVLSG 458


>ref|XP_002269250.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
           vinifera]
          Length = 648

 Score =  147 bits (370), Expect = 3e-33
 Identities = 94/253 (37%), Positives = 139/253 (54%), Gaps = 17/253 (6%)
 Frame = -1

Query: 714 PSSTNKRRCRQP-------NHVAFRLLCHVSKSGAVIGKSGSIVKLLEQETGARIQMDEV 556
           P+ ++KR    P        HVAFRLLCH S+ G VIGKSG IVK L+ +TGARI++++ 
Sbjct: 30  PNGSSKRSKPPPPPIPVPAGHVAFRLLCHASRIGGVIGKSGVIVKQLQSDTGARIRVEDS 89

Query: 555 IHGCQERVIHISSPELPKKTITLKGXXXXXXXXXXXXXVTSAQHGLIRVLEVGAEVFPTI 376
                 RVI + +P    + I L+G              ++AQ  ++RV E   EV   +
Sbjct: 90  PSTSDHRVILVIAPASVNRRIALQG-------SSEEVEASAAQEAVLRVFERILEVAAVV 142

Query: 375 N--------NCRLLADTSQIGYMIGKSGSRIKSIEKDIGARIRV-SVERCPTCALPNDEL 223
           +        +CRLLA+TSQ+G +IGK G  ++ I ++ G++I+V + E+ PTCA   DE+
Sbjct: 143 DGVPPGGVVSCRLLAETSQVGSVIGKGGKVVEKIRRESGSKIKVLTAEKLPTCAASTDEM 202

Query: 222 IEITGDSLAVKKATLAVSQCLQASPPLDRAQMAGSNSFMAAADGSFSYRHAE-FLSLPTF 46
           +EI GD LAVKKA +AVS+ LQ  P +D+ ++ G          S      + F    + 
Sbjct: 203 VEIEGDVLAVKKALVAVSRRLQDCPNVDKTKLIGGRPLEVVPQQSLPDPRVDLFQQRGSV 262

Query: 45  LPPTGSSFVDNAS 7
           LPP  S+ +  AS
Sbjct: 263 LPPIPSNTISYAS 275



 Score = 84.7 bits (208), Expect = 2e-14
 Identities = 51/162 (31%), Positives = 89/162 (54%), Gaps = 1/162 (0%)
 Frame = -1

Query: 672 VAFRLLCHVSKSGAVIGKSGSIVKLLEQETGARIQMDEVIHGCQERVIHISSPELPKKTI 493
           V F++LC   + G VIGK G+IVK L+ E GA I +   +  C ER+I I++ E P+   
Sbjct: 299 VIFKILCSNDRVGGVIGKGGTIVKALQNEAGASISVGAPVAECDERLITITASENPESRY 358

Query: 492 TLKGXXXXXXXXXXXXXVTSAQHGLIRVLEVGAEVFPTINNCRLLADTSQIGYMIGKSGS 313
           +                  S + G+ + L+ G++  P   + RL+  ++Q+G ++GK G+
Sbjct: 359 S------PAQNGVILVFNRSIEAGIEKGLDSGSKGSPV--SARLVVPSNQVGCLMGKGGT 410

Query: 312 RIKSIEKDIGARIR-VSVERCPTCALPNDELIEITGDSLAVK 190
            I  + K  GA IR +  ++ P CA  ND++++I+G+ + V+
Sbjct: 411 IISEMRKASGAGIRIIGSDQVPKCASENDQVVQISGEFVNVQ 452


>ref|XP_002323932.1| predicted protein [Populus trichocarpa] gi|222866934|gb|EEF04065.1|
           predicted protein [Populus trichocarpa]
          Length = 722

 Score =  145 bits (366), Expect = 9e-33
 Identities = 89/230 (38%), Positives = 129/230 (56%), Gaps = 18/230 (7%)
 Frame = -1

Query: 717 NPSSTNKRRCRQPN-----------HVAFRLLCHVSKSGAVIGKSGSIVKLLEQETGARI 571
           N SS NKR   QP+           HV+FRLLCH S+ G VIGK+G+I+K L+Q+TGA++
Sbjct: 10  NGSSANKRSKPQPSASAAPLPVPSGHVSFRLLCHASRIGGVIGKAGNIIKGLQQQTGAKV 69

Query: 570 QMDEVIHGCQERVIHISSPELPKKTITLKGXXXXXXXXXXXXXVTSAQHGLIRV----LE 403
           ++++      +RVI +  P      +  +              V+  Q  L+RV    LE
Sbjct: 70  RIEDAPSDSPDRVITVIGPITQSAVVFSR--------IESAVEVSKGQEALVRVFERILE 121

Query: 402 VGAE---VFPTINNCRLLADTSQIGYMIGKSGSRIKSIEKDIGARIRVSVERCPTCALPN 232
           V AE   V   + +CR+LA+ S +G +IGK G  ++ I KD G RI+V V++ P CA  N
Sbjct: 122 VAAESDSVADGVVSCRMLAEVSSVGAVIGKGGKVVEKIRKDCGCRIKVLVDKLPDCAASN 181

Query: 231 DELIEITGDSLAVKKATLAVSQCLQASPPLDRAQMAGSNSFMAAADGSFS 82
           +E+IEI GD  AVKK  +AVS+CLQ   P+D+ ++  S    A +  S S
Sbjct: 182 EEMIEIEGDVSAVKKGLVAVSRCLQDCQPVDKTRVTNSKPAEAVSRVSLS 231



 Score = 88.2 bits (217), Expect = 2e-15
 Identities = 57/180 (31%), Positives = 90/180 (50%), Gaps = 9/180 (5%)
 Frame = -1

Query: 681 PNHVAFRLLCHVSKSGAVIGKSGSIVKLLEQETGARIQMDEVIHGCQERVIHISSPELP- 505
           P  + FR+LC   + G VIGK G+IV+ L+ ETGA I +   +  C ER+I +++ E P 
Sbjct: 297 PQQLVFRILCTTDRIGGVIGKGGNIVRALQNETGAAISVGPTVSECDERLITVTASENPE 356

Query: 504 ------KKTITLKGXXXXXXXXXXXXXVTSAQHGLIRVLEVGAEVFPTINNCRLLADTSQ 343
                 +KTI L                 + + G+ + L+ G+     +   RL+   SQ
Sbjct: 357 SRYSAAQKTIVL-------------VFSRAVESGIEKGLDPGSSRGSPV-TARLVVSPSQ 402

Query: 342 IGYMIGKSGSRIKSIEKDIGARIRVSV--ERCPTCALPNDELIEITGDSLAVKKATLAVS 169
           +G ++GK G+ I  + K     IR+ V  +R P C    D ++EI+GD + VK A   V+
Sbjct: 403 VGCLLGKGGTIISEMRKATSTSIRIIVGDQRNPKCVPETDHVVEISGDFVNVKDAIYHVT 462


>ref|XP_002522689.1| Poly(rC)-binding protein, putative [Ricinus communis]
           gi|223538165|gb|EEF39776.1| Poly(rC)-binding protein,
           putative [Ricinus communis]
          Length = 698

 Score =  144 bits (364), Expect = 2e-32
 Identities = 89/229 (38%), Positives = 124/229 (54%), Gaps = 13/229 (5%)
 Frame = -1

Query: 681 PNHVAFRLLCHVSKSGAVIGKSGSIVKLLEQETGARIQMDEVIHGCQERVIHISSPELPK 502
           P HV+FRLLCH S+ G +IGKSG+I+K L+Q++GA+I+++E      +RVI         
Sbjct: 53  PGHVSFRLLCHASRIGGIIGKSGTIIKQLQQQSGAKIRIEESPAESSDRVI--------- 103

Query: 501 KTITLKGXXXXXXXXXXXXXVTS-AQHGLIRV----LEVGAEVFPT--------INNCRL 361
            T+  +G               S AQ GLIRV    LEV AE            + +CR+
Sbjct: 104 -TVIAEGQIVSKVRVESEEVDVSRAQEGLIRVFERILEVAAESDGINVVAGGGGVVSCRM 162

Query: 360 LADTSQIGYMIGKSGSRIKSIEKDIGARIRVSVERCPTCALPNDELIEITGDSLAVKKAT 181
           LA + Q G +IGK G  ++ I KD G +IRV  ++ P CA PN+E+IEI GD L+VKKA 
Sbjct: 163 LAGSKQAGSVIGKGGKVVEKIRKDCGVKIRVLTDKLPVCAGPNEEMIEIEGDILSVKKAL 222

Query: 180 LAVSQCLQASPPLDRAQMAGSNSFMAAADGSFSYRHAEFLSLPTFLPPT 34
           +AVS+CLQ   P+D+ ++  S  F A           E       + PT
Sbjct: 223 IAVSRCLQDCQPVDKPRVGSSKYFEAVPQEPLPEMRVEIAPQRNIMVPT 271



 Score = 75.9 bits (185), Expect = 9e-12
 Identities = 65/246 (26%), Positives = 109/246 (44%), Gaps = 7/246 (2%)
 Frame = -1

Query: 732 MVENDNPSSTNKRRCRQPNHVAFRLLCHVSKSGAVIGKSGSIVKLLEQETGARIQMDEVI 553
           ++E D   S + +  +Q   V F++LC     G VIGK G+I+K L+ ETGA I +   I
Sbjct: 287 LLETDRVPSLDMKLFQQ--EVVFKILCPNDMVGGVIGKGGTIIKALQNETGASITIGATI 344

Query: 552 HGCQERVIHISSPELPKKTITLKGXXXXXXXXXXXXXVTSAQHGLIRVLEVGAEVFPTIN 373
               ER+I + + E P+                     ++AQ  ++ V            
Sbjct: 345 AESDERLITVIASENPES------------------RYSAAQKAVVLVFS---------- 376

Query: 372 NCRLLADTSQIGYMIGKSGSRIKSIEKDIGARIRV-SVERCPTCALPNDELIEITGDSLA 196
             RL+  ++Q+G ++GK G  I  + K  G  I++ + ++ P C   N+++++I+GD + 
Sbjct: 377 --RLVVPSNQVGCLLGKGGIIISDMRKTTGTSIKILAGDQLPKCVPENEQVVQISGDFMN 434

Query: 195 VKKATLAVSQCLQASPPLDRAQMAGSNSFMAAADGSFSYRHAEFL------SLPTFLPPT 34
           VK A   V+  L+ +          + S     + S   R  E L       L TF  P 
Sbjct: 435 VKDAVYHVTGRLRDNLFSSALSTPVTRSTTVITEASPYGRLKEPLRDAFKEPLNTFREPL 494

Query: 33  GSSFVD 16
           G +F D
Sbjct: 495 GDAFRD 500


>ref|XP_004165366.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
           sativus]
          Length = 643

 Score =  141 bits (355), Expect = 2e-31
 Identities = 88/214 (41%), Positives = 122/214 (57%), Gaps = 20/214 (9%)
 Frame = -1

Query: 717 NPSSTNKRRCRQP------NHVAFRLLCHVSKSGAVIGKSGSIVKLLEQETGARIQMDEV 556
           N SS +KR  + P       HVAFR+LCH S+ G VIGKSG ++K L+Q TG +I+++E 
Sbjct: 37  NGSSKSKRSKQPPPLIIPPGHVAFRMLCHASRIGGVIGKSGFVIKQLQQSTGVKIRVEEA 96

Query: 555 IHGCQERVIH-ISSPELPKKTITLKGXXXXXXXXXXXXXVTSAQHGLIRV---------- 409
                +RV+  I SP L  +    +               + AQ GL++V          
Sbjct: 97  PSESPDRVVTVIGSPALTSRVFLEQNSGASGEEVEA----SKAQEGLLKVFERILEVAAE 152

Query: 408 ---LEVGAEVFPTINNCRLLADTSQIGYMIGKSGSRIKSIEKDIGARIRVSVERCPTCAL 238
              +EVGAEV   +  CRLLAD +Q+G +IGK G  ++ I K+ G RIRV  ++ P CA 
Sbjct: 153 IEGVEVGAEV--GVVYCRLLADVAQVGSVIGKGGKVVEKIRKESGCRIRVLTDKLPACAG 210

Query: 237 PNDELIEITGDSLAVKKATLAVSQCLQASPPLDR 136
           P+DE+IEI GD  A+KKA LAVS+ LQ  PP ++
Sbjct: 211 PSDEMIEIEGDVWAIKKALLAVSRRLQDCPPSEK 244



 Score = 81.3 bits (199), Expect = 2e-13
 Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 1/169 (0%)
 Frame = -1

Query: 672 VAFRLLCHVSKSGAVIGKSGSIVKLLEQETGARIQMDEVIHGCQERVIHISSPELPKKTI 493
           V F++LC   + G VIGK G+IV+ L+ E+GA + +   + GC ER+I I++ E      
Sbjct: 309 VVFKILCANDRIGGVIGKGGTIVRALQNESGATVSVGPSVTGCDERLISITASE------ 362

Query: 492 TLKGXXXXXXXXXXXXXVTSAQHGLIRVLEVGAEVFPTINNCRLLADTSQIGYMIGKSGS 313
            ++                S    + +  E  ++  P +   RL+  ++Q+G ++GK G 
Sbjct: 363 NIESRYSPAQKAVVLVFSRSVDVAIEKWQESSSKGSPVV--ARLVVPSNQVGCVLGKGGV 420

Query: 312 RIKSIEKDIGARIR-VSVERCPTCALPNDELIEITGDSLAVKKATLAVS 169
            I  I K  G  IR +S ++ P CA  +DE+++I+G+   V+ A   V+
Sbjct: 421 IISEIRKVTGTNIRIISSDQVPNCAAESDEIVQISGEFSNVQDALYNVT 469