BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00009577
         (355 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG51641.1|AC018908_7 putative U2 snRNP auxiliary factor; 190...    78   7e-13
ref|NP_176287.3| Splicing factor U2af large subunit B [Arabidops...    78   7e-13
gb|AAM98156.1| putative U2 snRNP auxiliary factor [Arabidopsis t...    78   7e-13
ref|XP_002888120.1| hypothetical protein ARALYDRAFT_475241 [Arab...    78   9e-13
gb|ACN29168.1| unknown [Zea mays] gi|413920349|gb|AFW60281.1| sp...    77   2e-12

>gb|AAG51641.1|AC018908_7 putative U2 snRNP auxiliary factor; 19096-22891 [Arabidopsis
           thaliana]
          Length = 568

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 39/102 (38%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
 Frame = -3

Query: 305 PSRVLCLLEAVCASGL-SHEGYLSYVDIFRKNGEKYGTLKSVVIPHRN-GKEKTTAAGRV 132
           P++++CL + V A  L   E Y   ++  R+ G K+G L +VVIP  N   + T   G+V
Sbjct: 465 PTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVGKV 524

Query: 131 FFEYSFIKDSAKAMKGINGMQLGYKRILAFYYPEDKFKSKDW 6
           F EY+ +  S+KA  G+NG + G  +++A YYPEDK+   D+
Sbjct: 525 FLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQGDY 566


>ref|NP_176287.3| Splicing factor U2af large subunit B [Arabidopsis thaliana]
           gi|209572798|sp|Q8L716.2|U2A2B_ARATH RecName:
           Full=Splicing factor U2af large subunit B; AltName:
           Full=U2 auxiliary factor 65 kDa subunit B; AltName:
           Full=U2 small nuclear ribonucleoprotein auxiliary factor
           large subunit B; Short=U2 snRNP auxiliary factor large
           subunit B gi|332195625|gb|AEE33746.1| Splicing factor
           U2af large subunit B [Arabidopsis thaliana]
          Length = 589

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 39/102 (38%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
 Frame = -3

Query: 305 PSRVLCLLEAVCASGL-SHEGYLSYVDIFRKNGEKYGTLKSVVIPHRN-GKEKTTAAGRV 132
           P++++CL + V A  L   E Y   ++  R+ G K+G L +VVIP  N   + T   G+V
Sbjct: 486 PTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVGKV 545

Query: 131 FFEYSFIKDSAKAMKGINGMQLGYKRILAFYYPEDKFKSKDW 6
           F EY+ +  S+KA  G+NG + G  +++A YYPEDK+   D+
Sbjct: 546 FLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQGDY 587


>gb|AAM98156.1| putative U2 snRNP auxiliary factor [Arabidopsis thaliana]
          Length = 589

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 39/102 (38%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
 Frame = -3

Query: 305 PSRVLCLLEAVCASGL-SHEGYLSYVDIFRKNGEKYGTLKSVVIPHRN-GKEKTTAAGRV 132
           P++++CL + V A  L   E Y   ++  R+ G K+G L +VVIP  N   + T   G+V
Sbjct: 486 PTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVGKV 545

Query: 131 FFEYSFIKDSAKAMKGINGMQLGYKRILAFYYPEDKFKSKDW 6
           F EY+ +  S+KA  G+NG + G  +++A YYPEDK+   D+
Sbjct: 546 FLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQGDY 587


>ref|XP_002888120.1| hypothetical protein ARALYDRAFT_475241 [Arabidopsis lyrata subsp.
           lyrata] gi|297333961|gb|EFH64379.1| hypothetical protein
           ARALYDRAFT_475241 [Arabidopsis lyrata subsp. lyrata]
          Length = 589

 Score = 77.8 bits (190), Expect = 9e-13
 Identities = 39/102 (38%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
 Frame = -3

Query: 305 PSRVLCLLEAVCASGL-SHEGYLSYVDIFRKNGEKYGTLKSVVIPHRN-GKEKTTAAGRV 132
           P++++CL + V A  L   E Y   ++  R+ G K+G L +VVIP  N   + T   G+V
Sbjct: 486 PTKIVCLTQVVTADDLRDDEEYADIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVGKV 545

Query: 131 FFEYSFIKDSAKAMKGINGMQLGYKRILAFYYPEDKFKSKDW 6
           F EY+ +  S+KA  G+NG + G  +++A YYPEDK+   D+
Sbjct: 546 FLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYLQGDY 587


>gb|ACN29168.1| unknown [Zea mays] gi|413920349|gb|AFW60281.1| splicing factor U2AF
           subunit [Zea mays]
          Length = 594

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 40/105 (38%), Positives = 63/105 (60%), Gaps = 2/105 (1%)
 Frame = -3

Query: 311 ACPSRVLCLLEAVCASGL-SHEGYLSYVDIFRKNGEKYGTLKSVVIPHRNGKEKTTAA-G 138
           A P++V+CL + V A  L   E Y   V+  R+ G KYG L  VVIP  +  +   A  G
Sbjct: 490 ALPTKVVCLTQVVTADELRDDEEYNDIVEDMREEGRKYGNLVKVVIPRPDPSDAPVAGVG 549

Query: 137 RVFFEYSFIKDSAKAMKGINGMQLGYKRILAFYYPEDKFKSKDWN 3
           +VF EY+ ++ S KA  G++G + G  +++A +YPEDKF ++ ++
Sbjct: 550 KVFLEYADVEGSTKAKTGMHGRKFGGNQVVAVFYPEDKFAAEQYD 594