BLASTX nr result
ID: Coptis23_contig00009576
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00009576
(2932 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_001763056.1| predicted protein [Physcomitrella patens sub... 144 1e-31
gb|AEI98617.1| hypothetical protein 111O18.4 [Coffea canephora] 140 2e-30
ref|XP_002525113.1| splicing factor u2af large subunit, putative... 140 2e-30
ref|XP_001765745.1| predicted protein [Physcomitrella patens sub... 140 2e-30
sp|Q9ZR39.1|U2A2A_NICPL RecName: Full=Splicing factor U2af large... 139 3e-30
>ref|XP_001763056.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685868|gb|EDQ72261.1| predicted protein
[Physcomitrella patens subsp. patens]
Length = 503
Score = 144 bits (363), Expect = 1e-31
Identities = 86/198 (43%), Positives = 120/198 (60%), Gaps = 13/198 (6%)
Frame = +3
Query: 1602 AKEKSLVDCLALNQSSFVNVGPVANSKISDSAF----PGTRRNMVSYPKNSFAFSDSSQ- 1766
++ +SLV QS F ++ P + +S +A PG + M F F + Q
Sbjct: 89 SRSRSLVS-FCRKQSGF-DMAPPGAAVVSGAALAGQIPGIAQPMPGVYPGMFPFGGTQQF 146
Query: 1767 ---EGIPSQSRSTQVTRHAHRVYVGGLPAGADEQKIISFFGHVLVDIGAHT-GP----VD 1922
G+P+Q+ + Q TRHA RVYVGGLP A+EQ I ++F V+ +G +T GP V+
Sbjct: 147 GGIPGMPAQAMTQQATRHARRVYVGGLPPLANEQTIATYFSQVMAAVGGNTAGPGDAVVN 206
Query: 1923 IHINREKNFAILEMSSVALASNTMALDGIIFEGTSLRIRRPGDYNPGLAADLGPTQPSCY 2102
++IN+EK FA +EM +V ASN MALDGI+FEG S+R+RRP DYNP +AA LGP+QPS +
Sbjct: 207 VYINQEKKFAFVEMRTVEEASNAMALDGIMFEGVSVRVRRPSDYNPSMAATLGPSQPSPH 266
Query: 2103 LKLEAIDRLPLSATNDQD 2156
L L A+ P +A D
Sbjct: 267 LNLAAVGLTPGNAAGGAD 284
>gb|AEI98617.1| hypothetical protein 111O18.4 [Coffea canephora]
Length = 570
Score = 140 bits (354), Expect = 2e-30
Identities = 79/154 (51%), Positives = 98/154 (63%), Gaps = 5/154 (3%)
Frame = +3
Query: 1695 AFPGTRRNMVSYPKNSFAFSDSSQEGIPSQSRSTQVTRHAHRVYVGGLPAGADEQKIISF 1874
A PG NM S P + +P Q+ + Q TRHA RVYVGGLP A+EQ + +F
Sbjct: 201 AVPGVFPNMFSLPTGQLG----ALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATF 256
Query: 1875 FGHVLVDIGAHT-GP----VDIHINREKNFAILEMSSVALASNTMALDGIIFEGTSLRIR 2039
F HV+ IG +T GP V+++IN EK FA +EM SV ASN MALDGIIFEG +++R
Sbjct: 257 FSHVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVR 316
Query: 2040 RPGDYNPGLAADLGPTQPSCYLKLEAIDRLPLSA 2141
RP DYNP LAA LGP+QP+ L L A+ P SA
Sbjct: 317 RPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSA 350
Score = 62.0 bits (149), Expect = 9e-07
Identities = 70/252 (27%), Positives = 119/252 (47%), Gaps = 12/252 (4%)
Frame = +3
Query: 1818 RVYVGGLPAGADEQKIISFFGHVLVDIGAHTGPVDIHINRE----KNFAI-----LEMSS 1970
R++VGGLP E +I +L G G D+ +RE K +A L ++
Sbjct: 358 RIFVGGLPYYFTEGQI----RELLESFGPLRG-FDLVKDRETGNSKGYAFCVYQDLSVTD 412
Query: 1971 VALASNTMALDGIIFEGTSLRIRRPGDYNPGLAADLGPTQPSCYLKLEAIDRLPLSATND 2150
+A A AL+GI +L +RR A+ G TQP +
Sbjct: 413 IACA----ALNGIKMGDKTLTVRR---------ANQGVTQPK----------------PE 443
Query: 2151 QDSMFRRKMLALAWEASIPHSNGLDARRSRVVCLLEAVCPSNPLRDDEYKR--LEGFFWK 2324
Q+S+ +A + + L ++V+CL + V ++ LRDDE LE +
Sbjct: 444 QESVLLHAQQQIALQKLMLQPGTL---ATKVLCLTQVVS-ADELRDDEDYADILEDMRLE 499
Query: 2325 TGEIYGKLKSVYVPRPDGKQKGLP-IGRVFLEYELMKSAVEAMEGINGKVLGRERVLAFY 2501
G+ L ++ +PRP P +G+VFLEY ++SA +A +G++G+ G +V+A +
Sbjct: 500 CGKF--TLVNLVIPRPSPTGDPTPGVGKVFLEYADVESANKARQGLHGRRFGGNQVVAVF 557
Query: 2502 YPEDKYASKEWD 2537
YPE++++ ++D
Sbjct: 558 YPENRFSQGDYD 569
>ref|XP_002525113.1| splicing factor u2af large subunit, putative [Ricinus communis]
gi|223535572|gb|EEF37240.1| splicing factor u2af large
subunit, putative [Ricinus communis]
Length = 549
Score = 140 bits (353), Expect = 2e-30
Identities = 79/156 (50%), Positives = 98/156 (62%), Gaps = 9/156 (5%)
Frame = +3
Query: 1701 PGTRRNMVSYPKNSFAFSDSSQEG----IPSQSRSTQVTRHAHRVYVGGLPAGADEQKII 1868
PGT + N F Q G +P Q+ + Q TRHA RVYVGGLP A+EQ +
Sbjct: 214 PGTAPAIPGMFPNMFPLGTGQQFGTLPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVA 273
Query: 1869 SFFGHVLVDIGAHT-GP----VDIHINREKNFAILEMSSVALASNTMALDGIIFEGTSLR 2033
+FF HV+ IG +T GP V+++IN EK FA +EM SV ASN MALDGIIFEG ++
Sbjct: 274 TFFSHVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVK 333
Query: 2034 IRRPGDYNPGLAADLGPTQPSCYLKLEAIDRLPLSA 2141
+RRP DYNP LAA LGP+QP+ L L A+ P SA
Sbjct: 334 VRRPSDYNPSLAATLGPSQPNPNLNLGAVGLTPGSA 369
>ref|XP_001765745.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682922|gb|EDQ69336.1| predicted protein
[Physcomitrella patens subsp. patens]
Length = 491
Score = 140 bits (353), Expect = 2e-30
Identities = 76/156 (48%), Positives = 102/156 (65%), Gaps = 9/156 (5%)
Frame = +3
Query: 1701 PGTRRNMVSYPKNSFAFSDSSQ----EGIPSQSRSTQVTRHAHRVYVGGLPAGADEQKII 1868
PG + M F F + Q G+P+Q+ + Q TRHA RVYVGGLP A+EQ I
Sbjct: 117 PGMAQPMPGVFPGMFPFGGTQQFGGIPGMPAQAMTQQATRHARRVYVGGLPPMANEQTIA 176
Query: 1869 SFFGHVLVDIGAHT-GP----VDIHINREKNFAILEMSSVALASNTMALDGIIFEGTSLR 2033
++F V+ +G +T GP V+++IN+EK FA +EM +V ASN MALDGI+FEG S+R
Sbjct: 177 TYFSQVMAAVGGNTAGPGDAVVNVYINQEKKFAFVEMRTVEEASNAMALDGIMFEGVSVR 236
Query: 2034 IRRPGDYNPGLAADLGPTQPSCYLKLEAIDRLPLSA 2141
+RRP DYNP +AA LGP+QPS +L L A+ P +A
Sbjct: 237 VRRPSDYNPSMAATLGPSQPSPHLNLAAVGLTPGAA 272
Score = 61.2 bits (147), Expect = 2e-06
Identities = 35/101 (34%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Frame = +3
Query: 2235 SRVVCLLEAVCPSNPLRDDEYKR-LEGFFWKTGEIYGKLKSVYVPRPDGKQKGLPIGRVF 2411
++VV L + V P D+EY+ LE + G+ YG L V +PRP + +G+VF
Sbjct: 390 TKVVALTQVVSPDELKDDEEYQDILEDMKEECGK-YGNLLRVVIPRPRDGEDVPGVGKVF 448
Query: 2412 LEYELMKSAVEAMEGINGKVLGRERVLAFYYPEDKYASKEW 2534
+EY A +A ++G+ G V+A YYPE+K+A+ ++
Sbjct: 449 VEYSDTAGAAKAKASLHGRRFGGHSVVAVYYPEEKFAAGDY 489
>sp|Q9ZR39.1|U2A2A_NICPL RecName: Full=Splicing factor U2af large subunit A; AltName:
Full=NpU2AF65a; AltName: Full=U2 auxiliary factor 65 kDa
subunit A; AltName: Full=U2 small nuclear
ribonucleoprotein auxiliary factor large subunit A;
Short=U2 snRNP auxiliary factor large subunit A
gi|3850823|emb|CAA77136.1| U2 snRNP auxiliary factor,
large subunit [Nicotiana plumbaginifolia]
Length = 555
Score = 139 bits (351), Expect = 3e-30
Identities = 80/156 (51%), Positives = 101/156 (64%), Gaps = 9/156 (5%)
Frame = +3
Query: 1701 PGTRRNMVSYPKNSFAFSDSSQEG----IPSQSRSTQVTRHAHRVYVGGLPAGADEQKII 1868
PGT + N F + SSQ G +P Q+ + Q TRHA RVYVGGLP A+EQ +
Sbjct: 180 PGTNPAIPGLFSNMFPLA-SSQFGALPMMPVQAMTQQATRHARRVYVGGLPPTANEQSVA 238
Query: 1869 SFFGHVLVDIGAHT-GP----VDIHINREKNFAILEMSSVALASNTMALDGIIFEGTSLR 2033
+FF HV+ IG +T GP V+++IN EK FA +EM SV ASN MALDG+IFEG ++
Sbjct: 239 TFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGVIFEGGPVK 298
Query: 2034 IRRPGDYNPGLAADLGPTQPSCYLKLEAIDRLPLSA 2141
+RRP DYNP LAA LGP+QPS L L A+ P S+
Sbjct: 299 VRRPSDYNPSLAATLGPSQPSPNLNLAAVGSTPGSS 334
Score = 71.2 bits (173), Expect = 1e-09
Identities = 66/246 (26%), Positives = 113/246 (45%), Gaps = 6/246 (2%)
Frame = +3
Query: 1818 RVYVGGLPAGADEQKIISFFGHVLVDIGAHTGPVDIHINRE----KNFAILEMSSVALAS 1985
R++VGGLP E +I +L G G D+ +RE K +A V++
Sbjct: 342 RIFVGGLPYYFTESQI----RELLESFGQLRG-FDLVKDRETGNSKGYAFCVYQDVSVTD 396
Query: 1986 NTMA-LDGIIFEGTSLRIRRPGDYNPGLAADLGPTQPSCYLKLEAIDRLPLSATNDQDSM 2162
A L+GI +L +RR A+ G TQP+ +Q+S+
Sbjct: 397 IACAALNGIKMGDKTLTVRR---------ANQGTTQPN----------------PEQESV 431
Query: 2163 FRRKMLALAWEASIPHSNGLDARRSRVVCLLEAVCPSNPLRDDEYKRLEGFFWKTGEIYG 2342
+A + + L ++V+CL E V DD+Y+ + E +G
Sbjct: 432 LLHAQQQIALQRFMLQPGAL---ATKVLCLTEVVTVDELNDDDDYQDILEDMRTECEKFG 488
Query: 2343 KLKSVYVPRPDGKQKGLP-IGRVFLEYELMKSAVEAMEGINGKVLGRERVLAFYYPEDKY 2519
L +V +PRP+ P +G+VFLEY + + +A +G+NG+ G +V+A +YPE+K+
Sbjct: 489 ALVNVVIPRPNPNGVPTPGLGKVFLEYADVDGSSKARQGLNGRKFGGNQVVAVFYPENKF 548
Query: 2520 ASKEWD 2537
+ +++
Sbjct: 549 SEGDYE 554