BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00009469
         (1347 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...   362   9e-98
ref|XP_002308414.1| predicted protein [Populus trichocarpa] gi|2...   358   2e-96
emb|CAN79881.1| hypothetical protein VITISV_017990 [Vitis vinifera]   358   2e-96
emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]      358   2e-96
ref|XP_002325119.1| predicted protein [Populus trichocarpa] gi|2...   357   3e-96

>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName:
            Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 3; Flags: Precursor
            gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName:
            Full=DNA-directed RNA polymerase 3A, chloroplastic;
            AltName: Full=NictaRpoT3-syl; AltName: Full=T7
            bacteriophage-type single subunit RNA polymerase 3A;
            Flags: Precursor gi|21425641|emb|CAC82576.3| phage-type
            RNA polymerase [Nicotiana sylvestris]
            gi|21425679|emb|CAC95027.2| plastid RNA polymerase
            [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 977

 Score =  362 bits (930), Expect = 9e-98
 Identities = 175/217 (80%), Positives = 192/217 (88%)
 Frame = +1

Query: 1    YGVTYVGAREQIKRRLEERGEITDDRLLFSASCYAAKVTLTALGEMFQAARSIMGWLGDC 180
            YGVTYVGAREQIKRRLEE+G I DDRLLF+ASCYAAKVTL ALGE+FQAAR  M WLGDC
Sbjct: 761  YGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDC 820

Query: 181  AKIIASENQPVRWITPLGLPVVQPYRKSERHLIRTSLQVLALQREGDSVELKRQRTAFPP 360
            AK+IASENQPVRW TPLGLPVVQPY K++RH+IRTSLQVLALQREGD+VE+++QRTAFPP
Sbjct: 821  AKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVEVRKQRTAFPP 880

Query: 361  NFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWAHACDVDKMNRILREKFIELYDIPILD 540
            NFVHSLDGSHMMMTAVACRDAGL FAGVHDSFW HACDVD+MNRILREKF+ELY +PIL+
Sbjct: 881  NFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSMPILE 940

Query: 541  DLLKSFQTSXXXXXXXXXXDRGDFDLEHVLQSPYFFN 651
            DLL+SFQ S           RGDFDL  VL+SPYFFN
Sbjct: 941  DLLESFQNSYPALTFPPLPKRGDFDLVEVLESPYFFN 977


>ref|XP_002308414.1| predicted protein [Populus trichocarpa] gi|222854390|gb|EEE91937.1|
            predicted protein [Populus trichocarpa]
          Length = 982

 Score =  358 bits (919), Expect = 2e-96
 Identities = 172/217 (79%), Positives = 194/217 (89%)
 Frame = +1

Query: 1    YGVTYVGAREQIKRRLEERGEITDDRLLFSASCYAAKVTLTALGEMFQAARSIMGWLGDC 180
            YGVTYVGAREQIKRRLEE+G ITDDR+LFSA+CYAAKVTLTALGE+FQAAR IMGWLGDC
Sbjct: 766  YGVTYVGAREQIKRRLEEKGHITDDRVLFSAACYAAKVTLTALGELFQAARDIMGWLGDC 825

Query: 181  AKIIASENQPVRWITPLGLPVVQPYRKSERHLIRTSLQVLALQREGDSVELKRQRTAFPP 360
            AK+IASE+QPVRW TPLGLPVVQPY K++RHLIRTSLQVLALQREG SV++++QRTAFPP
Sbjct: 826  AKVIASEDQPVRWTTPLGLPVVQPYYKTQRHLIRTSLQVLALQREGSSVQVRKQRTAFPP 885

Query: 361  NFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWAHACDVDKMNRILREKFIELYDIPILD 540
            NFVHSLDGSHMMMTAVACRDA L FAGVHDSFW HA D D MNRILREKF+ELY++PIL+
Sbjct: 886  NFVHSLDGSHMMMTAVACRDADLRFAGVHDSFWTHARDADLMNRILREKFVELYNMPILE 945

Query: 541  DLLKSFQTSXXXXXXXXXXDRGDFDLEHVLQSPYFFN 651
            +LL+ FQTS          +RG+FDL+ VL+SPYFFN
Sbjct: 946  NLLEDFQTSYPTLKFPSLPERGNFDLQEVLRSPYFFN 982


>emb|CAN79881.1| hypothetical protein VITISV_017990 [Vitis vinifera]
          Length = 305

 Score =  358 bits (918), Expect = 2e-96
 Identities = 172/217 (79%), Positives = 192/217 (88%)
 Frame = +1

Query: 1   YGVTYVGAREQIKRRLEERGEITDDRLLFSASCYAAKVTLTALGEMFQAARSIMGWLGDC 180
           YGVTY+GAREQIKRRL E+G ITD+RLLF+A+CYAAKVTL ALGE+FQAAR IM WLG+C
Sbjct: 89  YGVTYIGAREQIKRRLAEKGLITDERLLFTAACYAAKVTLAALGEIFQAARDIMAWLGEC 148

Query: 181 AKIIASENQPVRWITPLGLPVVQPYRKSERHLIRTSLQVLALQREGDSVELKRQRTAFPP 360
           AK+IASENQPV+W TPLGLPV+QPY KSERHLIRTSLQVLALQREG  V +++QRTAFPP
Sbjct: 149 AKVIASENQPVQWTTPLGLPVIQPYCKSERHLIRTSLQVLALQREGSVVVIRKQRTAFPP 208

Query: 361 NFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWAHACDVDKMNRILREKFIELYDIPILD 540
           NFVHSLDGSHMMMTAVACRDAGL FAGVHDSFW HACDVDKMNRILREKF+ELY +PIL+
Sbjct: 209 NFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHACDVDKMNRILREKFVELYSMPILE 268

Query: 541 DLLKSFQTSXXXXXXXXXXDRGDFDLEHVLQSPYFFN 651
           +LL+SFQTS          DRG+FDL  VL+SPYFFN
Sbjct: 269 NLLESFQTSHPTLTFPPLPDRGNFDLREVLESPYFFN 305


>emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]
          Length = 989

 Score =  358 bits (918), Expect = 2e-96
 Identities = 168/217 (77%), Positives = 197/217 (90%)
 Frame = +1

Query: 1    YGVTYVGAREQIKRRLEERGEITDDRLLFSASCYAAKVTLTALGEMFQAARSIMGWLGDC 180
            YGVT+VGAREQIKRRLEE+G ITDDRLLFSA+CY+AKVT++ALG++FQAAR IM WLGDC
Sbjct: 773  YGVTFVGAREQIKRRLEEKGVITDDRLLFSAACYSAKVTMSALGQLFQAARGIMDWLGDC 832

Query: 181  AKIIASENQPVRWITPLGLPVVQPYRKSERHLIRTSLQVLALQREGDSVELKRQRTAFPP 360
            AK+IASENQPVRW TPLGLPVVQPY KS+RHLI+TSLQVLALQ+EG+ +E+K+QRTAFPP
Sbjct: 833  AKVIASENQPVRWTTPLGLPVVQPYCKSKRHLIKTSLQVLALQQEGEGIEVKKQRTAFPP 892

Query: 361  NFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWAHACDVDKMNRILREKFIELYDIPILD 540
            N+VHSLDG+HMMMTAVACRDAGL FAGVHDSFW HACDV+KMN+ILR KF+ELY++PIL+
Sbjct: 893  NYVHSLDGTHMMMTAVACRDAGLQFAGVHDSFWTHACDVEKMNQILRVKFVELYNMPILE 952

Query: 541  DLLKSFQTSXXXXXXXXXXDRGDFDLEHVLQSPYFFN 651
            +LL+SFQT+          +RGDFDLE VL+SPYFFN
Sbjct: 953  NLLESFQTAYPASTFPPLPERGDFDLEEVLESPYFFN 989


>ref|XP_002325119.1| predicted protein [Populus trichocarpa] gi|222866553|gb|EEF03684.1|
            predicted protein [Populus trichocarpa]
          Length = 882

 Score =  357 bits (917), Expect = 3e-96
 Identities = 172/217 (79%), Positives = 194/217 (89%)
 Frame = +1

Query: 1    YGVTYVGAREQIKRRLEERGEITDDRLLFSASCYAAKVTLTALGEMFQAARSIMGWLGDC 180
            YGVTYVGAREQIKRRLEE+G ITDDRLLFSA+CY AKVTLTALGE+FQAAR IM WLGDC
Sbjct: 666  YGVTYVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLTALGELFQAARDIMSWLGDC 725

Query: 181  AKIIASENQPVRWITPLGLPVVQPYRKSERHLIRTSLQVLALQREGDSVELKRQRTAFPP 360
            AKIIASE+QPV+W TPLGLPVVQPY K+ERHLI+TSLQ+LALQREG SV++++QRTAFPP
Sbjct: 726  AKIIASEDQPVQWTTPLGLPVVQPYYKTERHLIKTSLQILALQREGSSVQVRKQRTAFPP 785

Query: 361  NFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWAHACDVDKMNRILREKFIELYDIPILD 540
            NFVHSLDGSHMMMTAVACRDAGL FAGVHDSFW HA DVD MNRILREKF+ELY++PIL+
Sbjct: 786  NFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHATDVDLMNRILREKFVELYNMPILE 845

Query: 541  DLLKSFQTSXXXXXXXXXXDRGDFDLEHVLQSPYFFN 651
            +LL+ FQTS          +RG+FDL+ VL+SPYFFN
Sbjct: 846  NLLEDFQTSYPTLQFPPLPERGNFDLQKVLRSPYFFN 882