BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00009467
         (280 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsi...    70   1e-24
gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsi...    68   2e-21
gb|AFU25705.1| gag-pol precursor [Castanea mollissima]                 67   3e-21
gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi...    65   6e-21
emb|CAN73809.1| hypothetical protein VITISV_037590 [Vitis vinifera]    62   1e-20

>gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 764

 Score = 69.7 bits (169), Expect(2) = 1e-24
 Identities = 29/46 (63%), Positives = 40/46 (86%)
 Frame = -3

Query: 140 PPNVLLGLSSGKFLGYLMTRRGIEANPDQIRAVIDMPSPKNKKEIQ 3
           P   L G++SG+FLGY++T+RGIEANP QIRA++D+ SP+NKKE+Q
Sbjct: 684 PAKCLFGVTSGEFLGYIVTKRGIEANPKQIRAILDLQSPRNKKEVQ 729



 Score = 68.2 bits (165), Expect(2) = 1e-24
 Identities = 31/53 (58%), Positives = 39/53 (73%)
 Frame = -2

Query: 279 IFSDLLGKIMEAYIDDIVVKSKDTGDHLSDL*LVFDRLNKYNMRLNPAKCSFG 121
           +F+  LGK ME YIDD++VKS  + DH+  L   F+ LNKYNM+LNPAKC FG
Sbjct: 638 MFAPQLGKTMEVYIDDMLVKSTRSADHIDHLKACFETLNKYNMKLNPAKCLFG 690


>gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1787

 Score = 67.8 bits (164), Expect(2) = 2e-21
 Identities = 29/46 (63%), Positives = 38/46 (82%)
 Frame = -3

Query: 140  PPNVLLGLSSGKFLGYLMTRRGIEANPDQIRAVIDMPSPKNKKEIQ 3
            P     G++SG+FLGYL+TRRGIEANP QI A+ID+PSP+N +E+Q
Sbjct: 969  PSKCTFGVTSGEFLGYLVTRRGIEANPKQISAIIDLPSPRNTREVQ 1014



 Score = 59.7 bits (143), Expect(2) = 2e-21
 Identities = 27/53 (50%), Positives = 38/53 (71%)
 Frame = -2

Query: 279  IFSDLLGKIMEAYIDDIVVKSKDTGDHLSDL*LVFDRLNKYNMRLNPAKCSFG 121
            +F+D L   ME YIDD++VKS    +H++ L   F  LN+YNM+LNP+KC+FG
Sbjct: 923  MFTDQLDHSMEVYIDDMLVKSLRAEEHITHLRQCFQVLNRYNMKLNPSKCTFG 975


>gb|AFU25705.1| gag-pol precursor [Castanea mollissima]
          Length = 1106

 Score = 67.0 bits (162), Expect(2) = 3e-21
 Identities = 31/53 (58%), Positives = 38/53 (71%)
 Frame = -2

Query: 279 IFSDLLGKIMEAYIDDIVVKSKDTGDHLSDL*LVFDRLNKYNMRLNPAKCSFG 121
           +F   LG+ MEAYIDD+V+KSK  GDHL DL   F  L K+ +RLN +KCSFG
Sbjct: 234 MFDSQLGRTMEAYIDDMVIKSKKVGDHLKDLHETFSVLRKHKLRLNASKCSFG 286



 Score = 59.7 bits (143), Expect(2) = 3e-21
 Identities = 24/40 (60%), Positives = 34/40 (85%)
 Frame = -3

Query: 122 GLSSGKFLGYLMTRRGIEANPDQIRAVIDMPSPKNKKEIQ 3
           G+ SGKFLGY++T RGIE NPDQI+A++++  P+N KE+Q
Sbjct: 286 GVDSGKFLGYMITHRGIEFNPDQIKAILELHPPRNPKEVQ 325


>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score = 64.7 bits (156), Expect(2) = 6e-21
 Identities = 28/46 (60%), Positives = 37/46 (80%)
 Frame = -3

Query: 140 PPNVLLGLSSGKFLGYLMTRRGIEANPDQIRAVIDMPSPKNKKEIQ 3
           P     G+ SG+FLGY++T+RGIEANP+QI A ++MPSPKN KE+Q
Sbjct: 651 PAKCTFGVPSGEFLGYIVTKRGIEANPNQINAFLNMPSPKNFKEVQ 696



 Score = 60.8 bits (146), Expect(2) = 6e-21
 Identities = 28/53 (52%), Positives = 38/53 (71%)
 Frame = -2

Query: 279 IFSDLLGKIMEAYIDDIVVKSKDTGDHLSDL*LVFDRLNKYNMRLNPAKCSFG 121
           +FS+ +GK ME YIDD+++KS    DH+  L   F  LN+Y M+LNPAKC+FG
Sbjct: 605 MFSEHVGKTMEVYIDDMLIKSLKKEDHVKHLEECFAILNQYQMKLNPAKCTFG 657


>emb|CAN73809.1| hypothetical protein VITISV_037590 [Vitis vinifera]
          Length = 1092

 Score = 62.4 bits (150), Expect(2) = 1e-20
 Identities = 30/53 (56%), Positives = 37/53 (69%)
 Frame = -2

Query: 279 IFSDLLGKIMEAYIDDIVVKSKDTGDHLSDL*LVFDRLNKYNMRLNPAKCSFG 121
           IF  L+G  +E YIDDIVVKSK   +H+  L  VF  L KY M+LNP+KC+FG
Sbjct: 162 IFKPLIGHTVEVYIDDIVVKSKTREEHVLHLQEVFHLLRKYGMKLNPSKCAFG 214



 Score = 62.4 bits (150), Expect(2) = 1e-20
 Identities = 24/46 (52%), Positives = 38/46 (82%)
 Frame = -3

Query: 140 PPNVLLGLSSGKFLGYLMTRRGIEANPDQIRAVIDMPSPKNKKEIQ 3
           P     G+S+GKFLG+++++RGIE +PDQ++AV++ P P+NKKE+Q
Sbjct: 208 PSKCAFGISAGKFLGFMVSQRGIEVSPDQVKAVMETPPPRNKKEVQ 253