BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00009431
         (492 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002518586.1| pentatricopeptide repeat-containing protein,...    46   6e-09
ref|XP_002316702.1| predicted protein [Populus trichocarpa] gi|2...    44   8e-08
emb|CAN76851.1| hypothetical protein VITISV_005999 [Vitis vinifera]    45   1e-07
emb|CBI41008.3| unnamed protein product [Vitis vinifera]               45   1e-07
ref|XP_002268636.2| PREDICTED: pentatricopeptide repeat-containi...    45   2e-07

>ref|XP_002518586.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542431|gb|EEF43973.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 377

 Score = 46.2 bits (108), Expect(2) = 6e-09
 Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 17/76 (22%)
 Frame = -1

Query: 471 TSINKLSKQKNLTTLVENFKN-------RSRHLVYEKTIDRLALAKH----------QNK 343
           +S+  L K++NL  LVE FK        R++  +YE+TI RLA+AK           Q K
Sbjct: 27  SSVKVLYKERNLKRLVEKFKKFSENDRFRTKTGIYEETIRRLAIAKRFNWIEEILEDQKK 86

Query: 342 FDDITKQGFAMRLISL 295
           + DI K+G+  RLI L
Sbjct: 87  YKDIHKEGYNARLIRL 102



 Score = 38.9 bits (89), Expect(2) = 6e-09
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 7/46 (15%)
 Frame = -2

Query: 209 KAGMFDRALKLFDELPERT---TVKKYN----ASVVSNKFDETDKL 93
           K+ MFD + K+FDE+P+R    TV  +N    A V S KFDE D L
Sbjct: 105 KSNMFDNSRKVFDEMPDRNCKRTVVSFNALLAACVTSKKFDEVDGL 150


>ref|XP_002316702.1| predicted protein [Populus trichocarpa] gi|222859767|gb|EEE97314.1|
           predicted protein [Populus trichocarpa]
          Length = 396

 Score = 44.3 bits (103), Expect(2) = 8e-08
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 17/72 (23%)
 Frame = -1

Query: 459 KLSKQKNLTTLVENFKN-------RSRHLVYEKTIDRLALAKH----------QNKFDDI 331
           ++ K++NL  LVE FKN       R++  VY+ +I RLA A+           Q +++DI
Sbjct: 32  EIIKERNLEHLVEKFKNASVDEDFRTKTFVYKNSIHRLAAARKFNYVEEILEDQKQYEDI 91

Query: 330 TKQGFAMRLISL 295
            K+GF  RLISL
Sbjct: 92  YKEGFNARLISL 103



 Score = 37.0 bits (84), Expect(2) = 8e-08
 Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
 Frame = -2

Query: 206 AGMFDRALKLFDELPER---TTVKKYN----ASVVSNKFDETDKLSSG 84
           AGMFD A K+FDE+ ER    TV  +N    A V S KFDE + L  G
Sbjct: 107 AGMFDNARKVFDEMFERKCARTVVSFNALLGACVNSKKFDEAEGLFKG 154


>emb|CAN76851.1| hypothetical protein VITISV_005999 [Vitis vinifera]
          Length = 383

 Score = 45.1 bits (105), Expect(2) = 1e-07
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 17/69 (24%)
 Frame = -1

Query: 450 KQKNLTTLVENFKN-------RSRHLVYEKTIDRLALAKH----------QNKFDDITKQ 322
           +++NL  LV+ FK        R++  +YE+T+ RLA AK           Q K+ DI+++
Sbjct: 35  RERNLKRLVQKFKKSSELDRFRTKTGIYEETVRRLASAKRFRWIEEILEEQKKYKDISRE 94

Query: 321 GFAMRLISL 295
           GFA+RLISL
Sbjct: 95  GFAVRLISL 103



 Score = 35.8 bits (81), Expect(2) = 1e-07
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 15/61 (24%)
 Frame = -2

Query: 209 KAGMFDRALKLFDELPER---TTVKKYN----ASVVSNKFDETD--------KLSSGNDL 75
           K+GMFD A K+FDE+P++    +V  +N    A V S KFD+ +        KLS   DL
Sbjct: 106 KSGMFDHAFKVFDEMPDQKCERSVLSFNXLLGACVXSKKFDKVEGFFSELPSKLSVEPDL 165

Query: 74  I 72
           +
Sbjct: 166 V 166


>emb|CBI41008.3| unnamed protein product [Vitis vinifera]
          Length = 379

 Score = 45.1 bits (105), Expect(2) = 1e-07
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 17/69 (24%)
 Frame = -1

Query: 450 KQKNLTTLVENFKN-------RSRHLVYEKTIDRLALAKH----------QNKFDDITKQ 322
           +++NL  LV+ FK        R++  +YE+T+ RLA AK           Q K+ DI+++
Sbjct: 43  RERNLKRLVQKFKKSSELDRFRTKTGIYEETVRRLASAKRFRWIEEILEEQKKYKDISRE 102

Query: 321 GFAMRLISL 295
           GFA+RLISL
Sbjct: 103 GFAVRLISL 111



 Score = 35.8 bits (81), Expect(2) = 1e-07
 Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 7/44 (15%)
 Frame = -2

Query: 209 KAGMFDRALKLFDELPER---TTVKKYN----ASVVSNKFDETD 99
           K+GMFD A K+FDE+P++    +V  +N    A V S KFD+ D
Sbjct: 114 KSGMFDHAFKVFDEMPDQKCERSVLSFNALLGACVHSKKFDKID 157


>ref|XP_002268636.2| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
           mitochondrial [Vitis vinifera]
          Length = 383

 Score = 45.1 bits (105), Expect(2) = 2e-07
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 17/69 (24%)
 Frame = -1

Query: 450 KQKNLTTLVENFKN-------RSRHLVYEKTIDRLALAKH----------QNKFDDITKQ 322
           +++NL  LV+ FK        R++  +YE+T+ RLA AK           Q K+ DI+++
Sbjct: 35  RERNLKRLVQKFKKSSELDRFRTKTGIYEETVRRLASAKRFRWIEEILEEQKKYKDISRE 94

Query: 321 GFAMRLISL 295
           GFA+RLISL
Sbjct: 95  GFAVRLISL 103



 Score = 35.0 bits (79), Expect(2) = 2e-07
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 15/61 (24%)
 Frame = -2

Query: 209 KAGMFDRALKLFDELPER---TTVKKYN----ASVVSNKFDETD--------KLSSGNDL 75
           K+GMFD A K+FDE+P++    +V  +N    A V S KFD+ +        KLS   DL
Sbjct: 106 KSGMFDHAFKVFDEMPDQKCERSVLSFNALLGACVHSKKFDKVEGFFSELPSKLSVEPDL 165

Query: 74  I 72
           +
Sbjct: 166 V 166