BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00009398
         (513 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI15896.3| unnamed protein product [Vitis vinifera]              201   4e-50
ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containi...   201   4e-50
ref|XP_002884709.1| pentatricopeptide repeat-containing protein ...   183   1e-44
ref|XP_002322960.1| predicted protein [Populus trichocarpa] gi|2...   183   1e-44
ref|NP_187518.1| pentatricopeptide repeat-containing protein [Ar...   179   2e-43

>emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score =  201 bits (512), Expect = 4e-50
 Identities = 90/149 (60%), Positives = 123/149 (82%)
 Frame = +1

Query: 67  STKDSHSALALFDSVTHQNPNFKHTPFTFHHILRRLTDSKLITHIPRIVKLIQTQQCKCT 246
           S K+ HSAL++FDSVT + P + HTP+ FHHIL+RL D KL+ H+ RIV+LI+TQ+CKC 
Sbjct: 19  SEKNPHSALSIFDSVT-RFPGYSHTPYVFHHILKRLFDPKLVAHVSRIVELIRTQKCKCP 77

Query: 247 EDIALTVIKTYSVNYMSGHALDIFRNMYDVFGCKPGIRSYNCLLNSFVKCNEYDKAESFF 426
           ED+ALTVIK Y+ N M   ALDIF+ M+++FGC+PGIRSYN LLN+ ++ N++D+AESFF
Sbjct: 78  EDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFF 137

Query: 427 MYFETMGMVPNLETYNVLVKIYVKKNEFE 513
           +YFETMG+ PNL+TYN+L+KI  +K +F+
Sbjct: 138 LYFETMGLSPNLQTYNILIKISCRKKQFD 166


>ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score =  201 bits (512), Expect = 4e-50
 Identities = 90/149 (60%), Positives = 123/149 (82%)
 Frame = +1

Query: 67  STKDSHSALALFDSVTHQNPNFKHTPFTFHHILRRLTDSKLITHIPRIVKLIQTQQCKCT 246
           S K+ HSAL++FDSVT + P + HTP+ FHHIL+RL D KL+ H+ RIV+LI+TQ+CKC 
Sbjct: 19  SEKNPHSALSIFDSVT-RFPGYSHTPYVFHHILKRLFDPKLVAHVSRIVELIRTQKCKCP 77

Query: 247 EDIALTVIKTYSVNYMSGHALDIFRNMYDVFGCKPGIRSYNCLLNSFVKCNEYDKAESFF 426
           ED+ALTVIK Y+ N M   ALDIF+ M+++FGC+PGIRSYN LLN+ ++ N++D+AESFF
Sbjct: 78  EDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFF 137

Query: 427 MYFETMGMVPNLETYNVLVKIYVKKNEFE 513
           +YFETMG+ PNL+TYN+L+KI  +K +F+
Sbjct: 138 LYFETMGLSPNLQTYNILIKISCRKKQFD 166


>ref|XP_002884709.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297330549|gb|EFH60968.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 689

 Score =  183 bits (465), Expect = 1e-44
 Identities = 83/149 (55%), Positives = 116/149 (77%)
 Frame = +1

Query: 67  STKDSHSALALFDSVTHQNPNFKHTPFTFHHILRRLTDSKLITHIPRIVKLIQTQQCKCT 246
           S K+  +A ALFDS T ++P + H+   +HHILRRL++++++TH+ RIV+LI++Q+CKC 
Sbjct: 19  SEKNPRAAFALFDSAT-RHPGYAHSAVVYHHILRRLSEARMVTHVGRIVELIRSQECKCD 77

Query: 247 EDIALTVIKTYSVNYMSGHALDIFRNMYDVFGCKPGIRSYNCLLNSFVKCNEYDKAESFF 426
           ED+AL+VIKTY  N M   ALD+F+ M ++FGC+PGIRSYN LLN+FV+  ++ K ES F
Sbjct: 78  EDVALSVIKTYGKNSMPDRALDVFKRMREIFGCEPGIRSYNTLLNAFVEAKQWVKVESLF 137

Query: 427 MYFETMGMVPNLETYNVLVKIYVKKNEFE 513
            YFET G+ PNL+TYNVL+K+  KK EFE
Sbjct: 138 AYFETAGVAPNLQTYNVLIKMSCKKKEFE 166


>ref|XP_002322960.1| predicted protein [Populus trichocarpa] gi|222867590|gb|EEF04721.1|
           predicted protein [Populus trichocarpa]
          Length = 694

 Score =  183 bits (464), Expect = 1e-44
 Identities = 86/146 (58%), Positives = 113/146 (77%)
 Frame = +1

Query: 73  KDSHSALALFDSVTHQNPNFKHTPFTFHHILRRLTDSKLITHIPRIVKLIQTQQCKCTED 252
           K   SALALFDS + Q P + H+P  F  ILRRL+D KL+ H+ RIV+LI+TQ+CKCTED
Sbjct: 21  KSPKSALALFDSASRQ-PGYTHSPHIFLLILRRLSDPKLVVHVTRIVELIKTQKCKCTED 79

Query: 253 IALTVIKTYSVNYMSGHALDIFRNMYDVFGCKPGIRSYNCLLNSFVKCNEYDKAESFFMY 432
           + LTV+K Y+ + M   ALD F+ M ++FGCKPGIRSYN LLN+F++ N  +KAESF  Y
Sbjct: 80  VVLTVLKAYAKSKMPNEALDCFQKMEEIFGCKPGIRSYNALLNAFIEANLLEKAESFLAY 139

Query: 433 FETMGMVPNLETYNVLVKIYVKKNEF 510
           FET+G++PNL+TYN+L+KI VKK +F
Sbjct: 140 FETVGILPNLQTYNILIKISVKKRQF 165


>ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g09060 gi|5923671|gb|AAD56322.1|AC009326_9
           hypothetical protein [Arabidopsis thaliana]
           gi|332641194|gb|AEE74715.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  179 bits (455), Expect = 2e-43
 Identities = 81/149 (54%), Positives = 114/149 (76%)
 Frame = +1

Query: 67  STKDSHSALALFDSVTHQNPNFKHTPFTFHHILRRLTDSKLITHIPRIVKLIQTQQCKCT 246
           S K+  +A ALFDS T ++P + H+   +HHILRRL++++++ H+ RIV+LI++Q+CKC 
Sbjct: 19  SEKNPRAAFALFDSAT-RHPGYAHSAVVYHHILRRLSETRMVNHVSRIVELIRSQECKCD 77

Query: 247 EDIALTVIKTYSVNYMSGHALDIFRNMYDVFGCKPGIRSYNCLLNSFVKCNEYDKAESFF 426
           ED+AL+VIKTY  N M   ALD+F+ M ++FGC+P IRSYN LLN+FV+  ++ K ES F
Sbjct: 78  EDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLF 137

Query: 427 MYFETMGMVPNLETYNVLVKIYVKKNEFE 513
            YFET G+ PNL+TYNVL+K+  KK EFE
Sbjct: 138 AYFETAGVAPNLQTYNVLIKMSCKKKEFE 166