BLASTX nr result
ID: Coptis23_contig00009383
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00009383
(1040 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containi... 330 3e-88
emb|CBI19956.3| unnamed protein product [Vitis vinifera] 330 3e-88
ref|XP_002458863.1| hypothetical protein SORBIDRAFT_03g041710 [S... 302 1e-79
tpg|DAA56535.1| TPA: pentatricopeptide repeat protein PPR868-14 ... 300 4e-79
ref|XP_002302197.1| predicted protein [Populus trichocarpa] gi|2... 300 4e-79
>ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
[Vitis vinifera]
Length = 575
Score = 330 bits (847), Expect = 3e-88
Identities = 161/242 (66%), Positives = 191/242 (78%)
Frame = +2
Query: 2 CAQLGSLDDGREVHDLIRRKRIKPNQFVLNGLVDMYAKCGDIRTARGIFEGMTRRNDVCW 181
C+QLG LD G+++H ++ K IK NQFVLNGLVDMYAKCGD+ AR IFEGM RN CW
Sbjct: 331 CSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACW 390
Query: 182 NAMISGLAVHGQSDEALALFHQMEVSAEKPNEVTFLAVLSACVHGGFVQEGLEIFSKMKE 361
N+MISG A+HGQS EAL F +ME S E P+E+TFL+VLSAC HGGFV GLEIFS+M E
Sbjct: 391 NSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRM-E 449
Query: 362 NYGLVAGIEHYGCVVDLLGRAGRVSEAYNLIKTMPMKPNDVVWGALLGACRIYSETEMAK 541
YGL GI+HYGC++DLLGRAGR+ EAY+LIK MP+KPNDVVWGALLGACR++ + EMA
Sbjct: 450 KYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALLGACRVHLDMEMAD 509
Query: 542 RVELEVGMVNSQNGASDDAYYVVLSNIYAASDRWEKAEKMRMVMAENGIQKEAGCSSIAL 721
RV E+ V+S + D++YV+LSNIYAASDRWEKAEKMRM MA G QK +GCSSI
Sbjct: 510 RVVEEIVKVDSNISSGCDSHYVLLSNIYAASDRWEKAEKMRMEMANKGFQKTSGCSSIMP 569
Query: 722 AN 727
N
Sbjct: 570 GN 571
Score = 85.1 bits (209), Expect = 3e-14
Identities = 59/204 (28%), Positives = 105/204 (51%)
Frame = +2
Query: 5 AQLGSLDDGREVHDLIRRKRIKPNQFVLNGLVDMYAKCGDIRTARGIFEGMTRRNDVCWN 184
A+ ++ REV + + ++ N F + ++ Y K G+++ AR IF+ + RN V WN
Sbjct: 235 ARNAEMEAAREVFEGMPQR----NFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWN 290
Query: 185 AMISGLAVHGQSDEALALFHQMEVSAEKPNEVTFLAVLSACVHGGFVQEGLEIFSKMKEN 364
++ISG A +G S+EAL F +M+ +P+EVT +VLSAC G + G +I M
Sbjct: 291 SLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHK 350
Query: 365 YGLVAGIEHYGCVVDLLGRAGRVSEAYNLIKTMPMKPNDVVWGALLGACRIYSETEMAKR 544
G+ +VD+ + G ++ A + + M + N W +++ I+ +++ A
Sbjct: 351 -GIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHR-NRACWNSMISGFAIHGQSKEA-- 406
Query: 545 VELEVGMVNSQNGASDDAYYVVLS 616
+E M +S G + + VLS
Sbjct: 407 LEFFGRMEDSHEGPDEITFLSVLS 430
Score = 69.3 bits (168), Expect = 1e-09
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 1/172 (0%)
Frame = +2
Query: 2 CAQLGSLDDGREVHDLIRRKRIKPNQFVLNGLVDMYAKCGDIRTARGIFEGMTRRNDVCW 181
CA L + G+ +H + + + + LV MYAKCG++ +R +F+ M RN V W
Sbjct: 104 CASLSIVKHGKALHAESIKNGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTW 163
Query: 182 NAMISGLAVHGQSDEALALFHQMEVSAEKPNEVTFLAVLSACVHGGFVQEGLEIFSKMKE 361
NAMI G +G S A+ LF +M + VT++ ++ G + F +
Sbjct: 164 NAMICGYLGNGDSKSAVLLFEKMSIR----TAVTWIEMIDGFARSGDTETARRFFDDVPS 219
Query: 362 NYGLVAGIEHYGCVVDLLGRAGRVSEAYNLIKTMPMKPNDVVWGALL-GACR 514
+ + + +VD R + A + + MP + N W +++ G C+
Sbjct: 220 E---LRNVVTWTVMVDGYARNAEMEAAREVFEGMPQR-NFFAWSSMISGYCK 267
>emb|CBI19956.3| unnamed protein product [Vitis vinifera]
Length = 446
Score = 330 bits (847), Expect = 3e-88
Identities = 161/242 (66%), Positives = 191/242 (78%)
Frame = +2
Query: 2 CAQLGSLDDGREVHDLIRRKRIKPNQFVLNGLVDMYAKCGDIRTARGIFEGMTRRNDVCW 181
C+QLG LD G+++H ++ K IK NQFVLNGLVDMYAKCGD+ AR IFEGM RN CW
Sbjct: 202 CSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACW 261
Query: 182 NAMISGLAVHGQSDEALALFHQMEVSAEKPNEVTFLAVLSACVHGGFVQEGLEIFSKMKE 361
N+MISG A+HGQS EAL F +ME S E P+E+TFL+VLSAC HGGFV GLEIFS+M E
Sbjct: 262 NSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRM-E 320
Query: 362 NYGLVAGIEHYGCVVDLLGRAGRVSEAYNLIKTMPMKPNDVVWGALLGACRIYSETEMAK 541
YGL GI+HYGC++DLLGRAGR+ EAY+LIK MP+KPNDVVWGALLGACR++ + EMA
Sbjct: 321 KYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALLGACRVHLDMEMAD 380
Query: 542 RVELEVGMVNSQNGASDDAYYVVLSNIYAASDRWEKAEKMRMVMAENGIQKEAGCSSIAL 721
RV E+ V+S + D++YV+LSNIYAASDRWEKAEKMRM MA G QK +GCSSI
Sbjct: 381 RVVEEIVKVDSNISSGCDSHYVLLSNIYAASDRWEKAEKMRMEMANKGFQKTSGCSSIMP 440
Query: 722 AN 727
N
Sbjct: 441 GN 442
Score = 85.1 bits (209), Expect = 3e-14
Identities = 59/204 (28%), Positives = 105/204 (51%)
Frame = +2
Query: 5 AQLGSLDDGREVHDLIRRKRIKPNQFVLNGLVDMYAKCGDIRTARGIFEGMTRRNDVCWN 184
A+ ++ REV + + ++ N F + ++ Y K G+++ AR IF+ + RN V WN
Sbjct: 106 ARNAEMEAAREVFEGMPQR----NFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWN 161
Query: 185 AMISGLAVHGQSDEALALFHQMEVSAEKPNEVTFLAVLSACVHGGFVQEGLEIFSKMKEN 364
++ISG A +G S+EAL F +M+ +P+EVT +VLSAC G + G +I M
Sbjct: 162 SLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHK 221
Query: 365 YGLVAGIEHYGCVVDLLGRAGRVSEAYNLIKTMPMKPNDVVWGALLGACRIYSETEMAKR 544
G+ +VD+ + G ++ A + + M + N W +++ I+ +++ A
Sbjct: 222 -GIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHR-NRACWNSMISGFAIHGQSKEA-- 277
Query: 545 VELEVGMVNSQNGASDDAYYVVLS 616
+E M +S G + + VLS
Sbjct: 278 LEFFGRMEDSHEGPDEITFLSVLS 301
Score = 63.2 bits (152), Expect = 1e-07
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 1/141 (0%)
Frame = +2
Query: 95 LVDMYAKCGDIRTARGIFEGMTRRNDVCWNAMISGLAVHGQSDEALALFHQMEVSAEKPN 274
LV MYAKCG++ +R +F+ M RN V WNAMI G +G S A+ LF +M +
Sbjct: 6 LVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIR----T 61
Query: 275 EVTFLAVLSACVHGGFVQEGLEIFSKMKENYGLVAGIEHYGCVVDLLGRAGRVSEAYNLI 454
VT++ ++ G + F + + + + +VD R + A +
Sbjct: 62 AVTWIEMIDGFARSGDTETARRFFDDVPSE---LRNVVTWTVMVDGYARNAEMEAAREVF 118
Query: 455 KTMPMKPNDVVWGALL-GACR 514
+ MP + N W +++ G C+
Sbjct: 119 EGMPQR-NFFAWSSMISGYCK 138
>ref|XP_002458863.1| hypothetical protein SORBIDRAFT_03g041710 [Sorghum bicolor]
gi|241930838|gb|EES03983.1| hypothetical protein
SORBIDRAFT_03g041710 [Sorghum bicolor]
Length = 544
Score = 302 bits (773), Expect = 1e-79
Identities = 141/240 (58%), Positives = 187/240 (77%)
Frame = +2
Query: 2 CAQLGSLDDGREVHDLIRRKRIKPNQFVLNGLVDMYAKCGDIRTARGIFEGMTRRNDVCW 181
CAQLGSL+ G++VHD I R+ I+ N FVLNGL+DMYAKCGD+ AR IF+GM +N CW
Sbjct: 293 CAQLGSLEQGKKVHDFINREHIRKNHFVLNGLIDMYAKCGDLVYARYIFDGMRWKNTECW 352
Query: 182 NAMISGLAVHGQSDEALALFHQMEVSAEKPNEVTFLAVLSACVHGGFVQEGLEIFSKMKE 361
N MIS LA HG+SDEAL LF QME S + PN +T LAVL AC HGGFV EGL IF+K+ +
Sbjct: 353 NTMISALASHGRSDEALHLFFQMEHSGQTPNTITVLAVLGACTHGGFVDEGLRIFNKL-D 411
Query: 362 NYGLVAGIEHYGCVVDLLGRAGRVSEAYNLIKTMPMKPNDVVWGALLGACRIYSETEMAK 541
YG+ AG+EHYGC+VDLLGRAG++ EAY ++K MP +PN+V+WG+LLGACR++ + EM++
Sbjct: 412 AYGVEAGVEHYGCLVDLLGRAGKLKEAYEIVKNMPEEPNEVIWGSLLGACRVHGDAEMSR 471
Query: 542 RVELEVGMVNSQNGASDDAYYVVLSNIYAASDRWEKAEKMRMVMAENGIQKEAGCSSIAL 721
V E+ ++S + +S+DA Y++LSNI AAS RWE+AE++R MA +G++K CSS+ L
Sbjct: 472 LVTDEIHRLHSVHASSNDAEYIMLSNIMAASKRWEQAEQIRRKMARHGVEKTPACSSLEL 531
Score = 73.9 bits (180), Expect = 6e-11
Identities = 56/199 (28%), Positives = 91/199 (45%), Gaps = 33/199 (16%)
Frame = +2
Query: 14 GSLDDGREVHDLIRRKRIKPNQFVLNGLVDMYAKCGDIRTARGIFEGMTRRNDVCWNAMI 193
G ++ REV D + + N FV + +V Y K G+ A+ +F + RN V WNA+I
Sbjct: 200 GDMEAAREVFDRMPAR----NAFVWSSMVTGYFKAGNAEEAQAVFHRIPTRNLVNWNALI 255
Query: 194 SGLAVHGQSDEALALFHQMEVSAEKPNEVTFLAVLSACVHGGFVQEGLEIF-----SKMK 358
+G A G S++AL F M KP+E T ++LSAC G +++G ++ ++
Sbjct: 256 AGYAQIGCSEKALEAFDSMLQERVKPDEFTMASLLSACAQLGSLEQGKKVHDFINREHIR 315
Query: 359 ENYGLVAGI-------------------------EHYGCVVDLLGRAGRVSEAYNLIKTM 463
+N+ ++ G+ E + ++ L GR EA +L M
Sbjct: 316 KNHFVLNGLIDMYAKCGDLVYARYIFDGMRWKNTECWNTMISALASHGRSDEALHLFFQM 375
Query: 464 P---MKPNDVVWGALLGAC 511
PN + A+LGAC
Sbjct: 376 EHSGQTPNTITVLAVLGAC 394
>tpg|DAA56535.1| TPA: pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 544
Score = 300 bits (768), Expect = 4e-79
Identities = 139/240 (57%), Positives = 187/240 (77%)
Frame = +2
Query: 2 CAQLGSLDDGREVHDLIRRKRIKPNQFVLNGLVDMYAKCGDIRTARGIFEGMTRRNDVCW 181
CAQLGSL+ G++VHD I ++ I+ N FV+NGL+DMYAKCGD+ AR IF+ M +N+ CW
Sbjct: 293 CAQLGSLEQGKKVHDFINQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNECW 352
Query: 182 NAMISGLAVHGQSDEALALFHQMEVSAEKPNEVTFLAVLSACVHGGFVQEGLEIFSKMKE 361
N MIS LA HGQSDEAL LF QME S KPN +T LAVL AC HGGFV EGL+IF+K+ +
Sbjct: 353 NTMISALASHGQSDEALHLFFQMERSGRKPNTITVLAVLGACTHGGFVDEGLQIFNKL-D 411
Query: 362 NYGLVAGIEHYGCVVDLLGRAGRVSEAYNLIKTMPMKPNDVVWGALLGACRIYSETEMAK 541
YG+ AG+EHYGC+VDLLGRAG++ EAY ++ M +PN+V+WG+LLGACR++ + EM++
Sbjct: 412 AYGVEAGVEHYGCLVDLLGRAGKLKEAYEIVNNMSEEPNEVIWGSLLGACRVHRDAEMSR 471
Query: 542 RVELEVGMVNSQNGASDDAYYVVLSNIYAASDRWEKAEKMRMVMAENGIQKEAGCSSIAL 721
V E+ ++S + +S+DA Y++L+NI AAS+RWE+AE+MR MA G++K GCSS+ L
Sbjct: 472 LVTEEILRLHSFHASSNDAEYIMLANIMAASERWEQAEQMRRKMARRGVEKTPGCSSLEL 531
Score = 86.7 bits (213), Expect = 9e-15
Identities = 53/180 (29%), Positives = 95/180 (52%), Gaps = 5/180 (2%)
Frame = +2
Query: 14 GSLDDGREVHDLIRRKRIKPNQFVLNGLVDMYAKCGDIRTARGIFEGMTRRNDVCWNAMI 193
G ++ REV D + + N FV + +V Y K GD AR +F+ + RN V WNA+I
Sbjct: 200 GDMETAREVFDRMPAR----NAFVWSSMVTGYFKAGDAEEARAVFDRIPTRNLVNWNALI 255
Query: 194 SGLAVHGQSDEALALFHQMEVSAEKPNEVTFLAVLSACVHGGFVQEGLEIF-----SKMK 358
+G A G S++AL FH M KP+E T ++LSAC G +++G ++ ++
Sbjct: 256 AGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQLGSLEQGKKVHDFINQEHIR 315
Query: 359 ENYGLVAGIEHYGCVVDLLGRAGRVSEAYNLIKTMPMKPNDVVWGALLGACRIYSETEMA 538
+N+ ++ G+ +D+ + G ++ A + +M K N+ W ++ A + +++ A
Sbjct: 316 KNHFVMNGL------IDMYAKCGDLAHARYIFDSMRWKNNE-CWNTMISALASHGQSDEA 368
>ref|XP_002302197.1| predicted protein [Populus trichocarpa] gi|222843923|gb|EEE81470.1|
predicted protein [Populus trichocarpa]
Length = 440
Score = 300 bits (768), Expect = 4e-79
Identities = 147/242 (60%), Positives = 187/242 (77%)
Frame = +2
Query: 2 CAQLGSLDDGREVHDLIRRKRIKPNQFVLNGLVDMYAKCGDIRTARGIFEGMTRRNDVCW 181
CAQL LD G++VH +I K +K N+FV+N LVDMYAKCGD+ AR IFE MT +N+ CW
Sbjct: 194 CAQLSLLDVGKDVHKMICAKGMKLNEFVVNALVDMYAKCGDLTGARLIFERMTNKNNACW 253
Query: 182 NAMISGLAVHGQSDEALALFHQMEVSAEKPNEVTFLAVLSACVHGGFVQEGLEIFSKMKE 361
N+MISG AVHG++ EAL F +ME S EKP+E+TFL+VLSACVHGGFV+ GLEIFSKM E
Sbjct: 254 NSMISGFAVHGKTKEALEFFGRMEESNEKPDEITFLSVLSACVHGGFVEVGLEIFSKM-E 312
Query: 362 NYGLVAGIEHYGCVVDLLGRAGRVSEAYNLIKTMPMKPNDVVWGALLGACRIYSETEMAK 541
YGL A I+HYGC+VDLLGRAGR+ +AY+LIK+MPMKPND VWGA LGACRI+ + +M +
Sbjct: 313 RYGLSASIKHYGCLVDLLGRAGRIQDAYHLIKSMPMKPNDTVWGAFLGACRIHMDNDMVE 372
Query: 542 RVELEVGMVNSQNGASDDAYYVVLSNIYAASDRWEKAEKMRMVMAENGIQKEAGCSSIAL 721
+V +V +S + +D +Y +L NIYA S WEKA ++ MVMA+ G+QK +G SS+ L
Sbjct: 373 QVVEDVCTSDSSVDSGNDPHYALLLNIYAGSGSWEKAGRVSMVMADRGLQKTSGRSSLML 432
Query: 722 AN 727
N
Sbjct: 433 EN 434
Score = 77.4 bits (189), Expect = 5e-12
Identities = 46/155 (29%), Positives = 83/155 (53%)
Frame = +2
Query: 74 NQFVLNGLVDMYAKCGDIRTARGIFEGMTRRNDVCWNAMISGLAVHGQSDEALALFHQME 253
N FV + ++ Y K G+++ AR IF+ + RN V WN++I G + +G +EAL F +M+
Sbjct: 117 NFFVWSSMISGYCKIGNVKEARAIFDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKMQ 176
Query: 254 VSAEKPNEVTFLAVLSACVHGGFVQEGLEIFSKMKENYGLVAGIEHYGCVVDLLGRAGRV 433
+P+EVT + VLSAC + G ++ KM G+ +VD+ + G +
Sbjct: 177 NEGYEPDEVTVVGVLSACAQLSLLDVGKDV-HKMICAKGMKLNEFVVNALVDMYAKCGDL 235
Query: 434 SEAYNLIKTMPMKPNDVVWGALLGACRIYSETEMA 538
+ A + + M K N+ W +++ ++ +T+ A
Sbjct: 236 TGARLIFERMTNK-NNACWNSMISGFAVHGKTKEA 269
Score = 65.5 bits (158), Expect = 2e-08
Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
Frame = +2
Query: 104 MYAKCGDIRTARGIFEGMTRRNDVCWNAMISGLAVHGQSDEALALFHQMEVSAEKPNEVT 283
MYAKCGDI +R +FE M RN V WNAMISG +G A LF +M N V+
Sbjct: 1 MYAKCGDIPDSRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTR----NAVS 56
Query: 284 FLAVLSACVHGGFVQEGLEIFSKMKENYGLVAGIEHYGCVVDLLGRAGRVSEAYNLIKTM 463
++ ++ G + F+++ + + + ++D G + A L + M
Sbjct: 57 WIEMIDGFARSGDMVAARRTFNEVPFE---LKNVVTWTVMIDGYASKGEMEAARLLFEDM 113
Query: 464 PMKPNDVVWGALL-GACRI 517
P + N VW +++ G C+I
Sbjct: 114 PQR-NFFVWSSMISGYCKI 131