BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00009376
         (2127 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268375.1| PREDICTED: pentatricopeptide repeat-containi...   619   e-174
ref|XP_004142520.1| PREDICTED: pentatricopeptide repeat-containi...   610   e-172
ref|XP_002522032.1| pentatricopeptide repeat-containing protein,...   573   e-161
ref|XP_002325369.1| predicted protein [Populus trichocarpa] gi|2...   569   e-159
ref|XP_002871814.1| pentatricopeptide repeat-containing protein ...   565   e-158

>ref|XP_002268375.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
            mitochondrial [Vitis vinifera]
            gi|296085168|emb|CBI28663.3| unnamed protein product
            [Vitis vinifera]
          Length = 454

 Score =  619 bits (1596), Expect = e-174
 Identities = 299/445 (67%), Positives = 361/445 (81%), Gaps = 1/445 (0%)
 Frame = +1

Query: 7    NPNFKFLKTLTTQSHQIPPTAQKHSREGVSNDDYFAAIHHISNIVRRDFYMERTLQKMQI 186
            +P    LKTLTT +  +  T           DDYFA +HHIS IVRRDFY+ERTL K+ I
Sbjct: 19   SPILTHLKTLTTITTHLQNTITS------KKDDYFAVVHHISAIVRRDFYLERTLNKLPI 72

Query: 187  NMTSELVYRVLRSCNKSGINSFRFFNWARNQPRYEPTTLEFEELIKILGKNKNWETMWKI 366
            ++TS+LVYRVLRSC  SG  S RFFNWAR+   Y+PTTLE+EEL+K L + K ++ MWKI
Sbjct: 73   SVTSDLVYRVLRSCPNSGTESLRFFNWARSHLSYQPTTLEYEELLKTLARTKQFQPMWKI 132

Query: 367  AEQMKKMGFVLTPDTFSMIIESYGKNGLVDKAVEVFNRMKN-FNCEQTIGVYNSLLFALC 543
            A QM+     L+P   S IIE +GK+GLVD+AVEVFN+ K+  NC QTI VYNSLLFALC
Sbjct: 133  AHQMQ----TLSPTVVSSIIEEFGKHGLVDQAVEVFNKAKSALNCPQTIEVYNSLLFALC 188

Query: 544  EVKNFQGAYALIRRLIRKGGVPDKRTYSILVNGWCSAGKLKEAQDFLEEMSRKGFNPPVR 723
            EVK F GAYALIRR+IRKG  P+K+TYS+LVNGWC+AGK+KEAQDFLEEMSRKGFNPPVR
Sbjct: 189  EVKYFHGAYALIRRMIRKGVTPNKQTYSVLVNGWCAAGKMKEAQDFLEEMSRKGFNPPVR 248

Query: 724  GRDLLIDGLLSAGYLEAAKGLVRKMTKEGFLPDITTFNSLLEAICEGGEVEFCVGLFRDV 903
            GRDLL+DGLL+AGYLEAAK +VRKMTKEG  PD+ T NS+LEAIC+ GE EFC+ ++ DV
Sbjct: 249  GRDLLVDGLLNAGYLEAAKEMVRKMTKEGCAPDVETLNSMLEAICKAGEAEFCIDIYNDV 308

Query: 904  CKLGLHPNISTYKVMIPAVSKLGRMDEAFRLLYCSIEDGYKPFPSLYAPILKGLCRVGQF 1083
            C+LG+ PN+ TYK+MIPA  K GR+DEAFR+L+ SIEDG++PFPSLYAPI+K LCR GQF
Sbjct: 309  CRLGVSPNVGTYKIMIPAACKEGRIDEAFRILHRSIEDGHRPFPSLYAPIIKALCRNGQF 368

Query: 1084 DDAFSFFSDMKAQGHPPNRPVYIMLMKMCARGGRFVEAANYLMEMIEMKLSPKPQSFDLI 1263
            DDAF FFSDMK +GHPPNRPVY ML+ MC RGGRFV+AANYL+EM E+ L+P  + FD++
Sbjct: 369  DDAFCFFSDMKVKGHPPNRPVYTMLITMCGRGGRFVDAANYLVEMTELNLTPISRCFDMV 428

Query: 1264 TDGLKHCGKHDLAKRIEQVEISLRG 1338
            TDGLK+CGKHDLA++IEQ+E+SLRG
Sbjct: 429  TDGLKNCGKHDLARKIEQLEVSLRG 453


>ref|XP_004142520.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
            mitochondrial-like [Cucumis sativus]
            gi|449518358|ref|XP_004166209.1| PREDICTED:
            pentatricopeptide repeat-containing protein At5g18390,
            mitochondrial-like [Cucumis sativus]
          Length = 455

 Score =  610 bits (1574), Expect = e-172
 Identities = 287/418 (68%), Positives = 351/418 (83%), Gaps = 3/418 (0%)
 Frame = +1

Query: 94   SNDDYFAAIHHISNIVRRDFYMERTLQKMQI-NMTSELVYRVLRSCNKSGINSFRFFNWA 270
            S DDYFAAIHHIS+IVRRDFYMERTL K++I N+ SELV+RVLR+C+ SG  SFRFFNWA
Sbjct: 37   SKDDYFAAIHHISHIVRRDFYMERTLNKLRISNLNSELVFRVLRACSNSGTESFRFFNWA 96

Query: 271  -RNQPRYEPTTLEFEELIKILGKNKNWETMWKIAEQMKKMGFVLTPDTFSMIIESYGKNG 447
              + P Y+PTTLEFEEL+K L + + + TMWK+  QMK     ++P+T S II+ YGK G
Sbjct: 97   CSHNPSYQPTTLEFEELVKTLARTRKYTTMWKVLLQMKTQNLKISPETISFIIQEYGKQG 156

Query: 448  LVDKAVEVFNRM-KNFNCEQTIGVYNSLLFALCEVKNFQGAYALIRRLIRKGGVPDKRTY 624
            LVD AV +FN+  K+ +C QT+ VYN+LLFALCEVK F GAYALIRR+IRKG  PDK+TY
Sbjct: 157  LVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMFHGAYALIRRMIRKGVTPDKKTY 216

Query: 625  SILVNGWCSAGKLKEAQDFLEEMSRKGFNPPVRGRDLLIDGLLSAGYLEAAKGLVRKMTK 804
              LV GWCSAGK+KEAQ+FLEEMS+KGFNPP+RGRDLL++GLL+AGYLE+AK +VRKMTK
Sbjct: 217  GTLVTGWCSAGKMKEAQEFLEEMSQKGFNPPLRGRDLLVEGLLNAGYLESAKDMVRKMTK 276

Query: 805  EGFLPDITTFNSLLEAICEGGEVEFCVGLFRDVCKLGLHPNISTYKVMIPAVSKLGRMDE 984
            EG +PDI TFNSL++ IC  GEV+FC+ +F +VCKLGL P+I+TYK++IPA SK+GR+DE
Sbjct: 277  EGSVPDIGTFNSLIDVICNSGEVDFCINIFHEVCKLGLCPDINTYKILIPATSKVGRIDE 336

Query: 985  AFRLLYCSIEDGYKPFPSLYAPILKGLCRVGQFDDAFSFFSDMKAQGHPPNRPVYIMLMK 1164
            AFRLL+C IEDG+ PFPSLY PILKG+C+ GQFDDAF FF DMK +GHPPNRPVY ML+ 
Sbjct: 337  AFRLLHCCIEDGHVPFPSLYGPILKGMCKRGQFDDAFCFFGDMKHKGHPPNRPVYTMLIT 396

Query: 1165 MCARGGRFVEAANYLMEMIEMKLSPKPQSFDLITDGLKHCGKHDLAKRIEQVEISLRG 1338
            MC RGGRFV+AANYLMEM E+ L P  + FD++TDGLK+CGKHDLAK+IEQ+E+S+RG
Sbjct: 397  MCGRGGRFVDAANYLMEMAELGLPPISRCFDMVTDGLKNCGKHDLAKKIEQLEVSIRG 454


>ref|XP_002522032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223538836|gb|EEF40436.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 451

 Score =  573 bits (1478), Expect = e-161
 Identities = 272/415 (65%), Positives = 341/415 (82%), Gaps = 2/415 (0%)
 Frame = +1

Query: 94   SNDDYFAAIHHISNIVRRDFYMERTLQKMQINMTSELVYRVLRSCNKSGINSFRFFNWAR 273
            + D YFA IHHI+NIVRRDFY ERTL K+   +TSELV+RVLR+C++S   S RFFNW+R
Sbjct: 36   TKDAYFALIHHITNIVRRDFYPERTLNKLNAPVTSELVFRVLRACSRSPTESLRFFNWSR 95

Query: 274  NQPRYEPTTLEFEELIKILGKNKNWETMWKIAEQMKKMG--FVLTPDTFSMIIESYGKNG 447
                Y PT++E+EELIKIL K+K + +MWK+  QMK     F ++ +T   IIE YG++G
Sbjct: 96   AY--YTPTSIEYEELIKILAKSKRYSSMWKLITQMKDQNPQFSISSETVRSIIEEYGRSG 153

Query: 448  LVDKAVEVFNRMKNFNCEQTIGVYNSLLFALCEVKNFQGAYALIRRLIRKGGVPDKRTYS 627
            L+D+AVEVFN+  + NCEQ + +YNSLLFALCEVK F GAYAL+RRLIRKG  P+K TYS
Sbjct: 154  LIDQAVEVFNQCNSLNCEQNVDIYNSLLFALCEVKLFHGAYALVRRLIRKGLAPNKTTYS 213

Query: 628  ILVNGWCSAGKLKEAQDFLEEMSRKGFNPPVRGRDLLIDGLLSAGYLEAAKGLVRKMTKE 807
            +LVNGWCS GK KEAQ FLEEMS+KGFNPPVRGRDLLI+GLL+AGY E+AK +V KM+KE
Sbjct: 214  VLVNGWCSNGKFKEAQLFLEEMSKKGFNPPVRGRDLLIEGLLNAGYFESAKEMVFKMSKE 273

Query: 808  GFLPDITTFNSLLEAICEGGEVEFCVGLFRDVCKLGLHPNISTYKVMIPAVSKLGRMDEA 987
            GF+PD+ TFN L+EAIC  GEV+FCV ++  + KLG  P+I++YK++IPAVSK+G++DEA
Sbjct: 274  GFVPDVNTFNCLIEAICNSGEVDFCVDMYYSLRKLGFCPDINSYKILIPAVSKVGKIDEA 333

Query: 988  FRLLYCSIEDGYKPFPSLYAPILKGLCRVGQFDDAFSFFSDMKAQGHPPNRPVYIMLMKM 1167
            F+LL  SIEDG+KPFP LYAPI+KG+CR GQFDDAF FF +MK +GHPPNRPVY ML+ M
Sbjct: 334  FKLLNNSIEDGHKPFPGLYAPIIKGMCRRGQFDDAFCFFGEMKVKGHPPNRPVYTMLITM 393

Query: 1168 CARGGRFVEAANYLMEMIEMKLSPKPQSFDLITDGLKHCGKHDLAKRIEQVEISL 1332
            C RGG++VEAANYL+EM EM L+P  + FD++TDGLK+CGKHDLAKRIEQ+E+S+
Sbjct: 394  CGRGGKYVEAANYLVEMTEMGLTPISRCFDMVTDGLKNCGKHDLAKRIEQLEVSV 448


>ref|XP_002325369.1| predicted protein [Populus trichocarpa] gi|222862244|gb|EEE99750.1|
            predicted protein [Populus trichocarpa]
          Length = 422

 Score =  569 bits (1466), Expect = e-159
 Identities = 272/419 (64%), Positives = 347/419 (82%), Gaps = 4/419 (0%)
 Frame = +1

Query: 94   SNDDYFAAIHHISNIVRRDFYMERTLQKMQINMTSELVYRVLRSCNKSGINSFRFFNWAR 273
            + D YF+ IH+I+NI+R++ Y ERTL K+ + +TSELV+RVLR+C+ S   S RFFNWAR
Sbjct: 6    NRDAYFSLIHNITNIIRKEVYPERTLNKLNLPITSELVFRVLRACSNSPSESLRFFNWAR 65

Query: 274  NQPRYEPTTLEFEELIKILGKNKNWETMWKIAEQMK-KMG--FVLTPDTFSMIIESYGKN 444
            +   Y PTT+E+EELI  L +NK + +MWK+  Q+K  +G  F ++ DT   IIE YGK+
Sbjct: 66   SY--YSPTTIEYEELIITLVRNKKYASMWKLIAQVKDNLGDKFSVSSDTVCSIIEEYGKH 123

Query: 445  GLVDKAVEVFNRM-KNFNCEQTIGVYNSLLFALCEVKNFQGAYALIRRLIRKGGVPDKRT 621
            GL+D+AVEVFN+  ++ NC+  + VYNSLLFALCEVK F GAYAL+RR+IRKG VPDKRT
Sbjct: 124  GLIDQAVEVFNKCSRSLNCQHNVCVYNSLLFALCEVKMFHGAYALVRRMIRKGIVPDKRT 183

Query: 622  YSILVNGWCSAGKLKEAQDFLEEMSRKGFNPPVRGRDLLIDGLLSAGYLEAAKGLVRKMT 801
            Y +LVNGWCS+GKL+EA+ FLEEMS+KGFNPPVRGRDLLI+GLL+AGYLE+AK +VR+M 
Sbjct: 184  YGVLVNGWCSSGKLREAKGFLEEMSKKGFNPPVRGRDLLIEGLLNAGYLESAKDMVRRMM 243

Query: 802  KEGFLPDITTFNSLLEAICEGGEVEFCVGLFRDVCKLGLHPNISTYKVMIPAVSKLGRMD 981
            KEG +PD+ TFNS++EAIC  GEV+FCV ++  VCKLG  P+I++YK++IPAVSK+GR+D
Sbjct: 244  KEGLVPDVNTFNSMVEAICNAGEVDFCVDMYHSVCKLGFCPDINSYKILIPAVSKVGRID 303

Query: 982  EAFRLLYCSIEDGYKPFPSLYAPILKGLCRVGQFDDAFSFFSDMKAQGHPPNRPVYIMLM 1161
            EAFRLL+  IEDG+KPFPSLYAPI+KG+ R GQFDDAF FFS+MK +GHPPNRPVY M++
Sbjct: 304  EAFRLLHNLIEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKVKGHPPNRPVYTMMI 363

Query: 1162 KMCARGGRFVEAANYLMEMIEMKLSPKPQSFDLITDGLKHCGKHDLAKRIEQVEISLRG 1338
             MC RGG+ VEAANYL+EM E+ L P  + FD++TDGLK+CGKHDLAKRIEQ+E+SLRG
Sbjct: 364  TMCGRGGKHVEAANYLVEMTEIGLVPISRCFDMVTDGLKNCGKHDLAKRIEQLEVSLRG 422


>ref|XP_002871814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297317651|gb|EFH48073.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 459

 Score =  565 bits (1455), Expect = e-158
 Identities = 269/413 (65%), Positives = 338/413 (81%), Gaps = 1/413 (0%)
 Frame = +1

Query: 103  DYFAAIHHISNIVRRDFYMERTLQKMQINMTSELVYRVLRSCNKSGINSFRFFNWARNQP 282
            DYFAAI+H+ NIVRR+ + ER+L  +++ +TSE V+RVLR+ ++S  +S RFFNWAR+ P
Sbjct: 46   DYFAAINHVVNIVRREIHPERSLNSLRLPVTSEFVFRVLRATSRSANDSLRFFNWARSNP 105

Query: 283  RYEPTTLEFEELIKILGKNKNWETMWKIAEQMKKMGFVLTPDTFSMIIESYGKNGLVDKA 462
             Y PT++E+EEL K L  +K +E+MWKI +QMK +   ++ +T   IIE YGKNG VD+A
Sbjct: 106  SYTPTSMEYEELAKSLASHKKYESMWKILKQMKDLSLDISGETLCFIIEQYGKNGHVDQA 165

Query: 463  VEVFNRM-KNFNCEQTIGVYNSLLFALCEVKNFQGAYALIRRLIRKGGVPDKRTYSILVN 639
            VE+FN + K   C+QT+ VYN+LL ALC+VK F GAYALIRR+IRKG  PDKRTY+ILVN
Sbjct: 166  VELFNGVPKTLGCQQTVDVYNALLHALCDVKMFHGAYALIRRMIRKGLKPDKRTYAILVN 225

Query: 640  GWCSAGKLKEAQDFLEEMSRKGFNPPVRGRDLLIDGLLSAGYLEAAKGLVRKMTKEGFLP 819
            GWCSAGK+KEAQ+FL+EMSRKGFNPP RGRDLLI+GLL+AGYLE+AK +V KMTK GF+P
Sbjct: 226  GWCSAGKMKEAQEFLDEMSRKGFNPPARGRDLLIEGLLNAGYLESAKEIVDKMTKGGFVP 285

Query: 820  DITTFNSLLEAICEGGEVEFCVGLFRDVCKLGLHPNISTYKVMIPAVSKLGRMDEAFRLL 999
            DI TFN+L+EAI + GEVEFC+ ++   CKLGL  +I TYK +IPAVSK+G++DEAFRLL
Sbjct: 286  DILTFNTLIEAISKSGEVEFCIEMYYTACKLGLCVDIDTYKTLIPAVSKIGKIDEAFRLL 345

Query: 1000 YCSIEDGYKPFPSLYAPILKGLCRVGQFDDAFSFFSDMKAQGHPPNRPVYIMLMKMCARG 1179
               +EDG+KPFPSLYAPI+KG+CR G FDDAFSFFSDMK + HPPNRPVY ML+ MC RG
Sbjct: 346  NNCVEDGHKPFPSLYAPIIKGMCRNGMFDDAFSFFSDMKVKAHPPNRPVYTMLITMCGRG 405

Query: 1180 GRFVEAANYLMEMIEMKLSPKPQSFDLITDGLKHCGKHDLAKRIEQVEISLRG 1338
            G+FV+AANYL+EM EM L P  + FD++TDGLK+ GKHDLA RIEQ+E+ LRG
Sbjct: 406  GKFVDAANYLVEMTEMGLVPISRCFDMVTDGLKNSGKHDLAMRIEQLEVQLRG 458