BLASTX nr result

ID: Coptis23_contig00009362 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00009362
         (1126 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510050.1| conserved hypothetical protein [Ricinus comm...   313   4e-83
ref|XP_002302388.1| predicted protein [Populus trichocarpa] gi|2...   304   2e-80
ref|XP_004142905.1| PREDICTED: uncharacterized protein LOC101212...   300   3e-79
ref|XP_002285461.1| PREDICTED: uncharacterized protein LOC100257...   298   2e-78
ref|NP_564492.1| uncharacterized protein [Arabidopsis thaliana] ...   288   2e-75

>ref|XP_002510050.1| conserved hypothetical protein [Ricinus communis]
           gi|223550751|gb|EEF52237.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 276

 Score =  313 bits (803), Expect = 4e-83
 Identities = 168/276 (60%), Positives = 192/276 (69%), Gaps = 19/276 (6%)
 Frame = +2

Query: 68  MFLVTQAPNGALSSKRCTHXXXXXXXXXXPRKPLF-SNKPK---PKFISRHPIKSPNLTL 235
           M LV+Q   G LS++RCT            + PLF SN      PKFIS+      +   
Sbjct: 1   MLLVSQGAGGGLSARRCTCTHISPPKFAHKKPPLFFSNNATAGGPKFISKKRQSFYHHLT 60

Query: 236 VANAVDSRPDS-------------SSPP--FKEDETVFVGDDRVPLEGVIQFDKPDFSEK 370
           +A A D   DS             +SPP  F+ DETVFVG + VPLEGVIQF+KP  S +
Sbjct: 61  LAKAADGSSDSPTSSTTKQSPSTNNSPPPSFRTDETVFVGQENVPLEGVIQFEKPSSSSR 120

Query: 371 INKWGRVALLSGGDVMALLLFSAIGRLSHGFPVLDVETLHTADPFIAGWFLSAYFLGGYG 550
           ++KWGRVAL+SGGDV+ALLLFSAIGR SHG+ V D ETL TADPF+AGWFL AYFLGGYG
Sbjct: 121 LDKWGRVALISGGDVLALLLFSAIGRFSHGYSVFDFETLRTADPFVAGWFLGAYFLGGYG 180

Query: 551 SDGTGMEGVSKAVTTAAKSWAVGIPLGLIIRGATSGHIPPVKFVLVTMGATAVLLIGWRA 730
            DG GM G SKAV  A KSWAVGIPLGLIIR  TSGHIPP  FVLVTMG+TAVLL+GWRA
Sbjct: 181 EDGRGMNGPSKAVIAAVKSWAVGIPLGLIIRAVTSGHIPPYTFVLVTMGSTAVLLVGWRA 240

Query: 731 LLFTALLKDKGKKNDTYKSGSPFELFELLTSLVRRW 838
           LL + L  ++ KKND Y+ GSPFELFELLTSLVRRW
Sbjct: 241 LLSSILPTNESKKNDVYRRGSPFELFELLTSLVRRW 276


>ref|XP_002302388.1| predicted protein [Populus trichocarpa] gi|222844114|gb|EEE81661.1|
           predicted protein [Populus trichocarpa]
          Length = 262

 Score =  304 bits (779), Expect = 2e-80
 Identities = 165/269 (61%), Positives = 183/269 (68%), Gaps = 12/269 (4%)
 Frame = +2

Query: 68  MFLVTQAPNGALSSKRCTHXXXXXXXXXXPRKPLFSNKPKPKFISRHPIKSPNLTLVA-- 241
           M L++QAP GALS+KR T              PLF N  KPKFISR     P LTL    
Sbjct: 1   MLLLSQAPRGALSAKRRT-----PLKFVPQNPPLFLNSTKPKFISRKQSTFP-LTLAKPE 54

Query: 242 ----------NAVDSRPDSSSPPFKEDETVFVGDDRVPLEGVIQFDKPDFSEKINKWGRV 391
                      ++ +     SPP   D  VFVG + VPLEGVIQF+KP  S ++ KWGRV
Sbjct: 55  GGLDSTSATKQSLSTNNPPPSPPTPND-IVFVGQEDVPLEGVIQFEKPTSSGRLEKWGRV 113

Query: 392 ALLSGGDVMALLLFSAIGRLSHGFPVLDVETLHTADPFIAGWFLSAYFLGGYGSDGTGME 571
           ALL+GGDV+ALLLFSAIGR  HGF V D ETL TADPFIAGWFL AYFLGGYG DG GM 
Sbjct: 114 ALLAGGDVLALLLFSAIGRFGHGFSVFDFETLRTADPFIAGWFLGAYFLGGYGEDGRGMN 173

Query: 572 GVSKAVTTAAKSWAVGIPLGLIIRGATSGHIPPVKFVLVTMGATAVLLIGWRALLFTALL 751
           G+SKA   AAKSWA GIPLGLIIR A+SGH+PP  F LVTMG+T VLLIGWR LL   L 
Sbjct: 174 GLSKAAIAAAKSWATGIPLGLIIRAASSGHVPPSTFTLVTMGSTGVLLIGWRMLLSRVLS 233

Query: 752 KDKGKKNDTYKSGSPFELFELLTSLVRRW 838
            D+ KKND Y+ GSPFELFELLTSLVRRW
Sbjct: 234 NDESKKNDVYRRGSPFELFELLTSLVRRW 262


>ref|XP_004142905.1| PREDICTED: uncharacterized protein LOC101212562 [Cucumis sativus]
           gi|449529905|ref|XP_004171938.1| PREDICTED:
           uncharacterized protein LOC101228828 [Cucumis sativus]
          Length = 260

 Score =  300 bits (769), Expect = 3e-79
 Identities = 156/264 (59%), Positives = 185/264 (70%), Gaps = 7/264 (2%)
 Frame = +2

Query: 68  MFLVTQAPNGALSSKRCTHXXXXXXXXXXPRKPLFSNKPKPKFISRHPIKSPNLTL--VA 241
           M  ++Q P G L ++R +           P  P   +K  P+   R+P K  N+TL    
Sbjct: 1   MLPLSQTPAGVLPARRLSLSTIPSLKFSNPN-PFRRSKFIPR---RNPTKPFNITLSKAE 56

Query: 242 NAVDSRPDSSS-----PPFKEDETVFVGDDRVPLEGVIQFDKPDFSEKINKWGRVALLSG 406
             VDS   + S     PPF  D+TVFVGD+ VPLEGVIQFDKP+ S ++ KWGRVA L+G
Sbjct: 57  GTVDSTKQALSNSPTPPPFPNDQTVFVGDENVPLEGVIQFDKPNTSSRLTKWGRVAFLAG 116

Query: 407 GDVMALLLFSAIGRLSHGFPVLDVETLHTADPFIAGWFLSAYFLGGYGSDGTGMEGVSKA 586
           GDV+ALLLFS+IGR SHG PV D ETL TADPFIAGWFLSAYFLGGYG DG G+ G SKA
Sbjct: 117 GDVLALLLFSSIGRFSHGLPVFDFETLRTADPFIAGWFLSAYFLGGYGDDGRGINGYSKA 176

Query: 587 VTTAAKSWAVGIPLGLIIRGATSGHIPPVKFVLVTMGATAVLLIGWRALLFTALLKDKGK 766
           V  A KSWA+GIPLGL++R ATSGH+PP  F+ VTMG+TAVLLIGWRA+L+        K
Sbjct: 177 VVAATKSWALGIPLGLLVRAATSGHLPPYNFIGVTMGSTAVLLIGWRAILYKVFPVSNSK 236

Query: 767 KNDTYKSGSPFELFELLTSLVRRW 838
           KND Y+ G+PFELFELLTSLVRRW
Sbjct: 237 KNDVYRRGNPFELFELLTSLVRRW 260


>ref|XP_002285461.1| PREDICTED: uncharacterized protein LOC100257450 [Vitis vinifera]
           gi|302142160|emb|CBI19363.3| unnamed protein product
           [Vitis vinifera]
          Length = 260

 Score =  298 bits (762), Expect = 2e-78
 Identities = 161/270 (59%), Positives = 182/270 (67%), Gaps = 13/270 (4%)
 Frame = +2

Query: 68  MFLVTQAPNGALSSKRCTHXXXXXXXXXXPRKPLFSNKPKPKFISRHPIKSPNLTLVANA 247
           M LV+QA +G LS + C               P FS KPKP   S        L +    
Sbjct: 1   MLLVSQAASGGLSGRACCSFSPP---------PKFS-KPKPTLFSNRKSSRRTLHITLAK 50

Query: 248 VDSRPDSS------------SPPFKEDETVFVGDDRVPLEGVIQFDKPDFS-EKINKWGR 388
            D   DS+            S P   D TVFVG + VPLEGVIQF+KP+ +  ++ KWGR
Sbjct: 51  ADGGLDSTPAAKQIPSDSNPSLPLNNDPTVFVGQESVPLEGVIQFEKPNATASRLEKWGR 110

Query: 389 VALLSGGDVMALLLFSAIGRLSHGFPVLDVETLHTADPFIAGWFLSAYFLGGYGSDGTGM 568
           VALL+GGDV+AL+LFSAIGR SHGF V+D ETL TADPFIAGW LSAYFLGGYG DG GM
Sbjct: 111 VALLAGGDVLALILFSAIGRFSHGFSVIDFETLRTADPFIAGWTLSAYFLGGYGDDGRGM 170

Query: 569 EGVSKAVTTAAKSWAVGIPLGLIIRGATSGHIPPVKFVLVTMGATAVLLIGWRALLFTAL 748
            G+SKAV  AAKSWA+GIPLGLIIR ATSGHIP   F+LVTMG+T  LLIGWRALLF+  
Sbjct: 171 NGLSKAVLAAAKSWALGIPLGLIIRAATSGHIPSSNFILVTMGSTGFLLIGWRALLFSIF 230

Query: 749 LKDKGKKNDTYKSGSPFELFELLTSLVRRW 838
             DK KKND Y+ GSPFELFELLTSLVRRW
Sbjct: 231 PNDKSKKNDVYRRGSPFELFELLTSLVRRW 260


>ref|NP_564492.1| uncharacterized protein [Arabidopsis thaliana]
           gi|8656004|gb|AAF78277.1|AC020576_21 Contains similarity
           to hypothetical protein F27F5.3 gi|7767678 from
           Arabidopsis thaliana F27F5 gb|AC007915 and contains a
           terpene synthase PF|01397 domain [Arabidopsis thaliana]
           gi|13878107|gb|AAK44131.1|AF370316_1 unknown protein
           [Arabidopsis thaliana] gi|17104773|gb|AAL34275.1|
           unknown protein [Arabidopsis thaliana]
           gi|332193943|gb|AEE32064.1| uncharacterized protein
           [Arabidopsis thaliana]
          Length = 258

 Score =  288 bits (737), Expect = 2e-75
 Identities = 144/202 (71%), Positives = 164/202 (81%), Gaps = 4/202 (1%)
 Frame = +2

Query: 245 AVDSRPDSSSP--PFKEDETVFVGDDRVPLEGVIQFDKPDF--SEKINKWGRVALLSGGD 412
           +V+S+P +S+   P   DETVFVG D VPLEGVIQFDKP    S  I KWGRVALL+GGD
Sbjct: 57  SVNSKPSTSASQIPSSGDETVFVGQDNVPLEGVIQFDKPSSTSSSNITKWGRVALLAGGD 116

Query: 413 VMALLLFSAIGRLSHGFPVLDVETLHTADPFIAGWFLSAYFLGGYGSDGTGMEGVSKAVT 592
           V+ALL+FSAIGR SHGFPV  ++TLHTADPFIAGWFLSAYFLGGY  +G GM+G SKAV 
Sbjct: 117 VLALLIFSAIGRFSHGFPVFSLDTLHTADPFIAGWFLSAYFLGGYAEEGRGMKGKSKAVV 176

Query: 593 TAAKSWAVGIPLGLIIRGATSGHIPPVKFVLVTMGATAVLLIGWRALLFTALLKDKGKKN 772
            AAKSW VG PLG+IIR A+SGHIP   FVLVTMG+TAVLLIGWRALLF+ L  +  KK+
Sbjct: 177 AAAKSWIVGTPLGIIIRSASSGHIPAYSFVLVTMGSTAVLLIGWRALLFSVLPTESKKKD 236

Query: 773 DTYKSGSPFELFELLTSLVRRW 838
           DTY+ GS FELFELLTSL+RRW
Sbjct: 237 DTYRKGSAFELFELLTSLIRRW 258


Top