BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00009360
         (1765 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN74746.1| hypothetical protein VITISV_012024 [Vitis vinifera]   561   e-157
ref|XP_002272601.1| PREDICTED: pentatricopeptide repeat-containi...   560   e-157
ref|XP_002510687.1| pentatricopeptide repeat-containing protein,...   530   e-148
ref|XP_002307797.1| predicted protein [Populus trichocarpa] gi|2...   527   e-147
ref|XP_003528528.1| PREDICTED: pentatricopeptide repeat-containi...   509   e-141

>emb|CAN74746.1| hypothetical protein VITISV_012024 [Vitis vinifera]
          Length = 514

 Score =  561 bits (1445), Expect = e-157
 Identities = 301/490 (61%), Positives = 360/490 (73%), Gaps = 8/490 (1%)
 Frame = -3

Query: 1598 MVEFRNSHFSRLTVMAQSKAGHSQRKLPKNLRYPRRAKVPPEPKGSLYLKKKKVIDIDPF 1419
            +VEF N +  +L V   ++  H  RK  KNL +PRRAK+PPEP+ S +LK          
Sbjct: 30   VVEFSNKNEIKLGVQCNARVNH--RKPTKNLPHPRRAKLPPEPEISTFLKGGN------- 80

Query: 1418 RMGFEYTEKPELMDK----NAESXXXXXXXXXXXXDLKWSTDELHAISSLFQGRIPQKPG 1251
              G E +E   ++DK    N +             ++ W +DE+ AISSLF GRIPQKPG
Sbjct: 81   -SGTEQSEMGTVLDKELDPNDDGFLVDGIEGRKEGEIVWDSDEIEAISSLFMGRIPQKPG 139

Query: 1250 SLNKERXXXXXXXXXXXXXXXPTPKKHVRRDCP----SRASVCDQVYKNPNFLIHLAREI 1083
             LN+ER               PT K+HVR        SRAS+  QVYKNP+FLI +AREI
Sbjct: 140  KLNRERPLPLPLPYKIRPMGLPTTKRHVRAASSMPYASRASLSKQVYKNPDFLISIAREI 199

Query: 1082 KSLDADKDVCEVLNRWVRFLRKGSLSLTIRELGHMDLPERALQTYCWAQKHPLLFPDDRI 903
            ++L  + DV  VLN+WVRFLRKGSLSLTIRELGHM LPERALQT+ WAQK P LFPDDRI
Sbjct: 200  RNLPLEDDVSPVLNKWVRFLRKGSLSLTIRELGHMGLPERALQTFFWAQKQPQLFPDDRI 259

Query: 902  LASTLEILARTRQLKKPFDLEKYTISASRSVIEALARGFIRGGSFSLARKLLLVAKANKR 723
            LAST+E+LART +LK PF LEK+T  A+RSVIEALARGFIR GS SLA KLLLVAK +KR
Sbjct: 260  LASTVEVLARTHKLKVPFSLEKFTGLATRSVIEALARGFIRRGSLSLAWKLLLVAKDSKR 319

Query: 722  TLDPSIHAKLILELGKNPDKYRLVLKLLNELAEMDDLKLNQQDCTAVMKVCVRLGKFEIV 543
             L PSI+AKLI ELGKNPDK+ LV  LL+EL E +DLKL+ QDCTAVMKVC+RLGKFEIV
Sbjct: 320  MLGPSIYAKLIFELGKNPDKHSLVQALLDELGEREDLKLSHQDCTAVMKVCIRLGKFEIV 379

Query: 542  ESLFKWFKESRRDISIVMYTTLIHSRYSEEKYREAMALVWEMEGLNFLFDLPAYRVVIKL 363
            ESLF W+K+S    S+VMYTTLIHSRY+E+KYREA+A+VWEME  + LFDLPAYRVVIKL
Sbjct: 380  ESLFNWYKQSENSPSVVMYTTLIHSRYTEKKYREALAVVWEMEASDCLFDLPAYRVVIKL 439

Query: 362  FVALNDVSRAARYFSRLKEARFAPTYDIYRDLIKVYAASGRLAKCKELCKEVEMVGYKLD 183
            F+ALND+SR  RYFS+LKEA F+PTYDIYRD++K+Y    RLAKC+E+CKE+EM G+KLD
Sbjct: 440  FIALNDLSRTGRYFSKLKEAGFSPTYDIYRDMLKIYMVFRRLAKCREVCKELEMSGFKLD 499

Query: 182  KQTESLLLQM 153
            K T S LLQ+
Sbjct: 500  KGTLSQLLQL 509


>ref|XP_002272601.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01860-like
            [Vitis vinifera]
          Length = 514

 Score =  560 bits (1444), Expect = e-157
 Identities = 301/490 (61%), Positives = 359/490 (73%), Gaps = 8/490 (1%)
 Frame = -3

Query: 1598 MVEFRNSHFSRLTVMAQSKAGHSQRKLPKNLRYPRRAKVPPEPKGSLYLKKKKVIDIDPF 1419
            +VEF N +  +L V   ++  H  RK  KNL +PRRAK+PPEP+ S +LK          
Sbjct: 30   VVEFSNKNEIKLGVQCNARVNH--RKPTKNLPHPRRAKLPPEPEISTFLKGGN------- 80

Query: 1418 RMGFEYTEKPELMDK----NAESXXXXXXXXXXXXDLKWSTDELHAISSLFQGRIPQKPG 1251
              G E +E   ++DK    N +             ++ W +DE+ AISSLF GRIPQKPG
Sbjct: 81   -SGTEQSEMGTVLDKEPDANDDGFLVDGIEGRKEGEIVWDSDEIEAISSLFMGRIPQKPG 139

Query: 1250 SLNKERXXXXXXXXXXXXXXXPTPKKHVRRDCP----SRASVCDQVYKNPNFLIHLAREI 1083
             LN+ER               PT K+HVR        SRAS+  QVYKNP+FLI +AREI
Sbjct: 140  KLNRERPLPLPLPYKLRPMGLPTTKRHVRAASSMPYASRASLSKQVYKNPDFLISIAREI 199

Query: 1082 KSLDADKDVCEVLNRWVRFLRKGSLSLTIRELGHMDLPERALQTYCWAQKHPLLFPDDRI 903
            + L  + DV  VLN+WVRFLRKGSLSLTIRELGHM LPERALQT+ WAQK P LFPDDRI
Sbjct: 200  RKLPLEDDVSPVLNKWVRFLRKGSLSLTIRELGHMGLPERALQTFFWAQKQPQLFPDDRI 259

Query: 902  LASTLEILARTRQLKKPFDLEKYTISASRSVIEALARGFIRGGSFSLARKLLLVAKANKR 723
            LAST+E+LART +LK PF LEK+T  ASRSVIEALARGFIR GS SLA KLLLVAK +KR
Sbjct: 260  LASTVEVLARTHKLKVPFSLEKFTGLASRSVIEALARGFIRRGSLSLAWKLLLVAKDSKR 319

Query: 722  TLDPSIHAKLILELGKNPDKYRLVLKLLNELAEMDDLKLNQQDCTAVMKVCVRLGKFEIV 543
             L PSI+AKLI ELGKNPDK+ LV  LL+EL E +DLKL+ QDCTAVMKVC+RLGKFEIV
Sbjct: 320  MLGPSIYAKLIFELGKNPDKHSLVQALLDELGEREDLKLSHQDCTAVMKVCIRLGKFEIV 379

Query: 542  ESLFKWFKESRRDISIVMYTTLIHSRYSEEKYREAMALVWEMEGLNFLFDLPAYRVVIKL 363
            ESLF W+K+S    S+VMYTTLIHSRY+E+KYREA+A+VWEME  + +FDLPAYRVVIKL
Sbjct: 380  ESLFNWYKQSENSPSVVMYTTLIHSRYTEKKYREALAVVWEMEASDCVFDLPAYRVVIKL 439

Query: 362  FVALNDVSRAARYFSRLKEARFAPTYDIYRDLIKVYAASGRLAKCKELCKEVEMVGYKLD 183
            F+ALND+SR  RYFS+LKEA F+PTYDIYRD++K+Y    RLAKC+E+CKE+EM G+KLD
Sbjct: 440  FIALNDLSRTGRYFSKLKEAGFSPTYDIYRDMLKIYMVFRRLAKCREVCKELEMSGFKLD 499

Query: 182  KQTESLLLQM 153
            K T S LLQ+
Sbjct: 500  KGTLSQLLQL 509


>ref|XP_002510687.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223551388|gb|EEF52874.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 469

 Score =  530 bits (1364), Expect = e-148
 Identities = 279/458 (60%), Positives = 342/458 (74%), Gaps = 1/458 (0%)
 Frame = -3

Query: 1529 QRKLPKNLRYPRRAKVPPEPKGSLYLKKKKVIDIDPFRMGFEYTEKPELMDKNAESXXXX 1350
            ++KLPKNL+ PRR+K+PP+   +L+LKK     +DPF+M     +  +  D N E     
Sbjct: 11   RKKLPKNLQSPRRSKLPPDFGVNLFLKKPTT-GVDPFQMDSFLVDDGD-GDLNQEEKEQN 68

Query: 1349 XXXXXXXXDLKWSTDELHAISSLFQGRIPQKPGSLNKERXXXXXXXXXXXXXXXPTPKKH 1170
                     + W +DE+ AISSLFQGRIPQ+PG+LN+ER               P+PKKH
Sbjct: 69   GD-------IVWESDEIEAISSLFQGRIPQRPGNLNRERPLPLPLPHKLRPLGPPSPKKH 121

Query: 1169 VRRDCPS-RASVCDQVYKNPNFLIHLAREIKSLDADKDVCEVLNRWVRFLRKGSLSLTIR 993
             R    S R+ +C++VYKNP+FLI LA++IK L+ D DV  VL+   RFLRKGSLSLTIR
Sbjct: 122  NRNVVVSLRSPICNKVYKNPSFLISLAKQIKCLNPDDDVSAVLDDCARFLRKGSLSLTIR 181

Query: 992  ELGHMDLPERALQTYCWAQKHPLLFPDDRILASTLEILARTRQLKKPFDLEKYTISASRS 813
            ELGHM  P+RALQT+CWAQK P L+PDDRILAST+EILAR + LK P D +K+T  ASR 
Sbjct: 182  ELGHMGFPDRALQTFCWAQKQPQLYPDDRILASTVEILARNQDLKVPIDWQKFTSLASRG 241

Query: 812  VIEALARGFIRGGSFSLARKLLLVAKANKRTLDPSIHAKLILELGKNPDKYRLVLKLLNE 633
            VIEA+ RGF++GG   LA KLL VAK +KR LD S++A+LILELGKNPDKY LV +LL+E
Sbjct: 242  VIEAMIRGFLKGGRLKLAWKLLAVAKHDKRMLDASLYARLILELGKNPDKYMLVEQLLDE 301

Query: 632  LAEMDDLKLNQQDCTAVMKVCVRLGKFEIVESLFKWFKESRRDISIVMYTTLIHSRYSEE 453
            L E +DL L+ QDCTA+MKVC+RL KFE VE LF WFK+S  + S+VMYTTLIHSRYSE+
Sbjct: 302  LGEREDLNLSHQDCTAIMKVCIRLQKFEFVECLFTWFKQSGHEPSVVMYTTLIHSRYSEK 361

Query: 452  KYREAMALVWEMEGLNFLFDLPAYRVVIKLFVALNDVSRAARYFSRLKEARFAPTYDIYR 273
            KYREA+A VWEMEG +FLFDLPAYRVVIKLFVALND+ RA RYFS+LKEA  +PTYDIYR
Sbjct: 362  KYREALAGVWEMEGSSFLFDLPAYRVVIKLFVALNDLPRAVRYFSKLKEAGLSPTYDIYR 421

Query: 272  DLIKVYAASGRLAKCKELCKEVEMVGYKLDKQTESLLL 159
            +LIK+Y  SGRLAKCKE+ KE EM G+KLD+Q +  LL
Sbjct: 422  NLIKIYLVSGRLAKCKEIWKEAEMAGFKLDEQIKMDLL 459


>ref|XP_002307797.1| predicted protein [Populus trichocarpa] gi|222857246|gb|EEE94793.1|
            predicted protein [Populus trichocarpa]
          Length = 475

 Score =  527 bits (1358), Expect = e-147
 Identities = 275/469 (58%), Positives = 339/469 (72%), Gaps = 1/469 (0%)
 Frame = -3

Query: 1556 MAQSKAGHSQRKLPKNLRYPRRAKVPPEPKGSLYLKKKKVIDIDPFRMGFEYTEKPELMD 1377
            MA S      RK+PKN+RYPRR+K+PP+   +L+LKK +   +          E+ E ++
Sbjct: 1    MAHSSTRICYRKIPKNIRYPRRSKLPPDFGVNLFLKKPQTDSVQDHSDDLTEEEEEEEIE 60

Query: 1376 KNAESXXXXXXXXXXXXDLKWSTDELHAISSLFQGRIPQKPGSLNKERXXXXXXXXXXXX 1197
             N               ++ W ++E+ AISSLF+GRIPQKPG L +ER            
Sbjct: 61   VN-------------NGEIVWESEEIEAISSLFRGRIPQKPGKLGRERPLPLPVPYKLRP 107

Query: 1196 XXXPTPKKHVRRDCP-SRASVCDQVYKNPNFLIHLAREIKSLDADKDVCEVLNRWVRFLR 1020
               P PKKHV +    SRAS+  Q+YKNP+FLI LA+EIK L  D+DV  VL+   R+L 
Sbjct: 108  LGLPAPKKHVNKQVSLSRASISSQIYKNPSFLIGLAKEIKRLSPDQDVSVVLDNCSRYLH 167

Query: 1019 KGSLSLTIRELGHMDLPERALQTYCWAQKHPLLFPDDRILASTLEILARTRQLKKPFDLE 840
            KGSLSLTIRELGH+ LPERALQT+CW QK P LFPDDR+LAST+E+LAR   LK PF+LE
Sbjct: 168  KGSLSLTIRELGHLGLPERALQTFCWVQKQPRLFPDDRVLASTVEVLARNHDLKVPFNLE 227

Query: 839  KYTISASRSVIEALARGFIRGGSFSLARKLLLVAKANKRTLDPSIHAKLILELGKNPDKY 660
            K+T  ASR VIEA+ +G IRGGS  L+ KL+ VAK  KR LDPS++AK+ILELGKNPDK+
Sbjct: 228  KFTNLASRRVIEAMVKGLIRGGSLKLSWKLISVAKDGKRMLDPSVYAKIILELGKNPDKH 287

Query: 659  RLVLKLLNELAEMDDLKLNQQDCTAVMKVCVRLGKFEIVESLFKWFKESRRDISIVMYTT 480
             L   LL+ELAE +DL L+QQDCTAVMKVC++LGKFE VESLF WF++S  + S+VMYTT
Sbjct: 288  VLAEALLDELAEREDLNLSQQDCTAVMKVCIKLGKFEAVESLFNWFRQSGHEPSVVMYTT 347

Query: 479  LIHSRYSEEKYREAMALVWEMEGLNFLFDLPAYRVVIKLFVALNDVSRAARYFSRLKEAR 300
            LIHSRYSE KYREA+A+VWEMEG + LFDL AYRVVIKLFVALND+ RA RYFS+LKEA 
Sbjct: 348  LIHSRYSESKYREALAVVWEMEGSDCLFDLTAYRVVIKLFVALNDLPRAVRYFSKLKEAG 407

Query: 299  FAPTYDIYRDLIKVYAASGRLAKCKELCKEVEMVGYKLDKQTESLLLQM 153
             +PTYDIYR+LI +Y  SGRLAKCKE+ KE EM G+K  K+  + LLQ+
Sbjct: 408  LSPTYDIYRNLITLYMVSGRLAKCKEVWKEAEMAGFKFSKEMAAGLLQL 456


>ref|XP_003528528.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01860-like
            [Glycine max]
          Length = 478

 Score =  509 bits (1310), Expect = e-141
 Identities = 267/475 (56%), Positives = 344/475 (72%), Gaps = 4/475 (0%)
 Frame = -3

Query: 1577 HFSRLTVMAQSKAGHSQRKLPKNLRYPRRAKVPPEPKGSLYLKKKKVIDIDPFRMGFEYT 1398
            ++ R+TV+A SK    +R+ PK+ RY  R K PPE   +L+LKK                
Sbjct: 21   NYRRVTVVAHSK----RRRPPKDNRYRPRPKQPPEFGVNLFLKKPST------------A 64

Query: 1397 EKPELMDKNAESXXXXXXXXXXXXDLKWSTDELHAISSLFQGRIPQKPGSLNKERXXXXX 1218
             KP   D + +S             + W +DEL AISSLFQGRIPQKPG L++ER     
Sbjct: 65   SKPT--DDDMDSNEENDEEEDGNIGVVWESDELEAISSLFQGRIPQKPGKLDRERPLPLP 122

Query: 1217 XXXXXXXXXXPTPKKHVRRDCP----SRASVCDQVYKNPNFLIHLAREIKSLDADKDVCE 1050
                      PTPK  V+   P    SRAS+  +VYK+P+FL+ LAR+I  L  D DV +
Sbjct: 123  VPFKLRPLRLPTPKTQVKLTAPAVVSSRASMAKKVYKSPSFLVGLARQISRLGPDADVSK 182

Query: 1049 VLNRWVRFLRKGSLSLTIRELGHMDLPERALQTYCWAQKHPLLFPDDRILASTLEILART 870
            +L +WV+FLRKGSLSLTIRELGHM  PERALQT+ WAQ  P LFPDD ILAST+E+LAR 
Sbjct: 183  ILGKWVQFLRKGSLSLTIRELGHMGFPERALQTFLWAQNQPHLFPDDWILASTVEVLARN 242

Query: 869  RQLKKPFDLEKYTISASRSVIEALARGFIRGGSFSLARKLLLVAKANKRTLDPSIHAKLI 690
             +L+ PF+L +YT  ASR+V+EA+ +GFI+GG+   A K+L+VA+ +KR LD SI+AKLI
Sbjct: 243  HELRIPFNLGQYTGLASRAVLEAMIKGFIKGGNLRFAWKVLIVARRDKRMLDSSIYAKLI 302

Query: 689  LELGKNPDKYRLVLKLLNELAEMDDLKLNQQDCTAVMKVCVRLGKFEIVESLFKWFKESR 510
            LELGKNPD++R VL LL+EL E D+L L+QQDCTA+MKVCV++GKFE+VESLF WFK+S 
Sbjct: 303  LELGKNPDRHRHVLPLLDELGERDELNLSQQDCTAIMKVCVKMGKFEVVESLFSWFKQSG 362

Query: 509  RDISIVMYTTLIHSRYSEEKYREAMALVWEMEGLNFLFDLPAYRVVIKLFVALNDVSRAA 330
               SIVM+T++IHSRY+E+KYREA+A+VWEME  N LFDLPAYRVVIKLFVALND+SRA 
Sbjct: 363  YQPSIVMFTSVIHSRYTEKKYREALAVVWEMEASNCLFDLPAYRVVIKLFVALNDLSRAT 422

Query: 329  RYFSRLKEARFAPTYDIYRDLIKVYAASGRLAKCKELCKEVEMVGYKLDKQTESL 165
            RYFS+LKEA F+P++ +Y+D++++Y ASGR+AKCKELC+E E+ G+KLDK   S+
Sbjct: 423  RYFSKLKEAGFSPSFGLYKDMLQIYMASGRIAKCKELCREAEIAGFKLDKYLVSV 477