BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00009306
         (987 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002521386.1| structural constituent of ribosome, putative...    84   2e-26
ref|XP_002276959.1| PREDICTED: uncharacterized protein LOC100265...   100   7e-26
emb|CAG23918.1| LIN1 protein [Cicer arietinum]                         96   6e-25
ref|XP_002882857.1| structural constituent of ribosome [Arabidop...    92   1e-24
ref|NP_001030692.1| Ribosomal protein L34 [Arabidopsis thaliana]...    92   2e-24

>ref|XP_002521386.1| structural constituent of ribosome, putative [Ricinus communis]
           gi|223539464|gb|EEF41054.1| structural constituent of
           ribosome, putative [Ricinus communis]
          Length = 195

 Score = 84.0 bits (206), Expect(2) = 2e-26
 Identities = 41/55 (74%), Positives = 46/55 (83%)
 Frame = +1

Query: 430 FFLPEGDDSSLSNTMLLLPKRTYQPSTIKRKRTHGFLARKATKGGRRVIARRVAK 594
           FFLP+GD SS    MLL PKRT+QPS I+RKR HGF ARKATKGGR+VIARR+AK
Sbjct: 73  FFLPDGDSSS--EPMLLFPKRTFQPSLIRRKRNHGFFARKATKGGRKVIARRIAK 125



 Score = 62.0 bits (149), Expect(2) = 2e-26
 Identities = 34/76 (44%), Positives = 47/76 (61%)
 Frame = +3

Query: 105 MSSKTLARTGLSLFNRFLNPNSTHNLISQTSEISPNLSPTLSKFQTSLHLQPNNKNDESV 284
           M++KTL RTG SL NR +N      +++ + EI+P L P++SKFQ SLH   N  +  S+
Sbjct: 1   MATKTLIRTGASLMNRMIN----RQILAHSLEITPQLFPSISKFQNSLHFPQN--DTLSI 54

Query: 285 KRSDIDLFLHPCGFPS 332
            R   + FLHP G PS
Sbjct: 55  TRLSNEGFLHPSGLPS 70


>ref|XP_002276959.1| PREDICTED: uncharacterized protein LOC100265274 [Vitis vinifera]
           gi|297743038|emb|CBI35905.3| unnamed protein product
           [Vitis vinifera]
          Length = 147

 Score = 99.8 bits (247), Expect(2) = 7e-26
 Identities = 51/61 (83%), Positives = 53/61 (86%)
 Frame = +1

Query: 430 FFLPEGDDSSLSNTMLLLPKRTYQPSTIKRKRTHGFLARKATKGGRRVIARRVAKGRARI 609
           FFLP+GD SS    MLL PKRTYQPS IKRKRTHGF ARKATKGGRRVIARRVAKGR+RI
Sbjct: 88  FFLPDGDSSS--EPMLLFPKRTYQPSHIKRKRTHGFFARKATKGGRRVIARRVAKGRSRI 145

Query: 610 T 612
           T
Sbjct: 146 T 146



 Score = 44.7 bits (104), Expect(2) = 7e-26
 Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
 Frame = +3

Query: 105 MSSKTLARTGLSLF----NR-FLNPNSTHN---LISQTSEISPNLSPTLSKFQTSLHLQP 260
           M+SKTL R G SL     NR  L+ N+T N   L+S +  ++P L P+L+K Q SLHL  
Sbjct: 1   MASKTLIRAGASLIKGLSNRSLLHQNTTPNHRILLSGSVGVTPKLFPSLAKPQPSLHL-- 58

Query: 261 NNKNDESVKRS---DIDLFLHPCGFPS 332
           +   D  + +    D     +PCG PS
Sbjct: 59  HETLDSQILKELAFDSQALFYPCGLPS 85


>emb|CAG23918.1| LIN1 protein [Cicer arietinum]
          Length = 134

 Score = 96.3 bits (238), Expect(2) = 6e-25
 Identities = 47/61 (77%), Positives = 50/61 (81%)
 Frame = +1

Query: 430 FFLPEGDDSSLSNTMLLLPKRTYQPSTIKRKRTHGFLARKATKGGRRVIARRVAKGRARI 609
           FFLP GD  S    MLL PKRT+QPSTI+RKR HGF ARKATKGGR+VIARRVAKGR RI
Sbjct: 73  FFLPNGDAPSSDEPMLLFPKRTFQPSTIRRKRNHGFFARKATKGGRKVIARRVAKGRFRI 132

Query: 610 T 612
           T
Sbjct: 133 T 133



 Score = 45.1 bits (105), Expect(2) = 6e-25
 Identities = 29/76 (38%), Positives = 39/76 (51%)
 Frame = +3

Query: 105 MSSKTLARTGLSLFNRFLNPNSTHNLISQTSEISPNLSPTLSKFQTSLHLQPNNKNDESV 284
           M+SKTL R G++L NR    NS   L S   +  P + P+LSK Q      P N  + + 
Sbjct: 1   MASKTLLRNGVALLNRLSLSNSKSLLNSNNPQ--PYIFPSLSKLQNF----PQNDAESAK 54

Query: 285 KRSDIDLFLHPCGFPS 332
                + FL+PCG PS
Sbjct: 55  NLISSEGFLYPCGLPS 70


>ref|XP_002882857.1| structural constituent of ribosome [Arabidopsis lyrata subsp.
           lyrata] gi|297328697|gb|EFH59116.1| structural
           constituent of ribosome [Arabidopsis lyrata subsp.
           lyrata]
          Length = 147

 Score = 92.0 bits (227), Expect(2) = 1e-24
 Identities = 46/61 (75%), Positives = 51/61 (83%)
 Frame = +1

Query: 430 FFLPEGDDSSLSNTMLLLPKRTYQPSTIKRKRTHGFLARKATKGGRRVIARRVAKGRARI 609
           FFLPE D SS    +LL PKRT+QPSTI+RKR HGF ARKATKGGRRVIARR+AKGR R+
Sbjct: 88  FFLPEVDPSS--EPLLLFPKRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRHRV 145

Query: 610 T 612
           T
Sbjct: 146 T 146



 Score = 48.1 bits (113), Expect(2) = 1e-24
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
 Frame = +3

Query: 105 MSSKTLARTGLSLFNRFLNPNSTH-----------NLISQTSEISPNLSPTLSKFQTSLH 251
           M++KTL R+G SL NRFL+  +T+            +  Q  EI P   P+LS  Q+SL 
Sbjct: 1   MAAKTLIRSGASLMNRFLSKPTTNLVQNNLRSSFQQIAPQGQEIPPYFFPSLSNLQSSLI 60

Query: 252 LQPNNKNDESVKRSDIDLFLHPCGFPS 332
            +PN  +  S++  +   FL+P G PS
Sbjct: 61  SRPN--DTASLQELNERGFLYPSGLPS 85


>ref|NP_001030692.1| Ribosomal protein L34 [Arabidopsis thaliana]
           gi|29824329|gb|AAP04125.1| unknown protein [Arabidopsis
           thaliana] gi|110739249|dbj|BAF01538.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|332641910|gb|AEE75431.1| Ribosomal protein L34
           [Arabidopsis thaliana]
          Length = 147

 Score = 92.0 bits (227), Expect(2) = 2e-24
 Identities = 46/61 (75%), Positives = 51/61 (83%)
 Frame = +1

Query: 430 FFLPEGDDSSLSNTMLLLPKRTYQPSTIKRKRTHGFLARKATKGGRRVIARRVAKGRARI 609
           FFLPE D SS    +LL PKRT+QPSTI+RKR HGF ARKATKGGRRVIARR+AKGR R+
Sbjct: 88  FFLPEVDPSS--EPLLLFPKRTFQPSTIRRKRNHGFFARKATKGGRRVIARRIAKGRHRV 145

Query: 610 T 612
           T
Sbjct: 146 T 146



 Score = 47.8 bits (112), Expect(2) = 2e-24
 Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
 Frame = +3

Query: 105 MSSKTLARTGLSLFNRFLNPNST----HNLIS-------QTSEISPNLSPTLSKFQTSLH 251
           M++KTL R+G SL NRFL   +T    +NL S       Q  EI P   P+LS  Q+SL 
Sbjct: 1   MAAKTLIRSGASLMNRFLTKPTTNIVQNNLRSSFQYIAPQGQEIPPYFFPSLSNLQSSLI 60

Query: 252 LQPNNKNDESVKRSDIDLFLHPCGFPS 332
            +PN  +  S++  +   FL+P G PS
Sbjct: 61  SRPN--DTASLQELNERGFLYPSGLPS 85