BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00009301
         (1840 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine...   511   e-142
ref|XP_004140075.1| PREDICTED: uncharacterized RNA pseudouridine...   494   e-137
ref|XP_002311995.1| predicted protein [Populus trichocarpa] gi|2...   494   e-137
ref|XP_002879786.1| pseudouridine synthase family protein [Arabi...   476   e-132
emb|CBI31423.3| unnamed protein product [Vitis vinifera]              475   e-131

>ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464 isoform
            1 [Vitis vinifera]
          Length = 393

 Score =  511 bits (1315), Expect = e-142
 Identities = 266/392 (67%), Positives = 303/392 (77%), Gaps = 4/392 (1%)
 Frame = -1

Query: 1756 ATTLSSSLHVILKPSLTSKPIFKTKAFPLLRSI----TSKTDFNITFAXXXXXXXXXXXX 1589
            A+   SS H + +PSL  +     +  P+  SI    T+  +FNI+FA            
Sbjct: 15   ASAAFSSFH-LSRPSLARRHF---RTIPVRSSISPPSTTSAEFNISFAPKSKNPKPQ--- 67

Query: 1588 XXXXXPAVPLLIPWIVRGEDGQLKLQSTPPTQLLHDMANAXXXXXXXXXXXXXXXXXXSP 1409
                  +  LLIPWIVR E+G L++QSTPP + L DMA A                    
Sbjct: 68   ------SETLLIPWIVRDENGNLRVQSTPPERYLQDMAKAKALSAKKKKKKEESTARAVA 121

Query: 1408 VLTSEPKYSKAARRFYNENFRDPPQRLSKLLAAAGVASRRSSEELIFGGKVTVNGSVCNT 1229
            V   EPKYSKAARRFYNENFRDPPQRLSK+LAAAGVASRR+SEELIF G+VTVNGSVCNT
Sbjct: 122  V---EPKYSKAARRFYNENFRDPPQRLSKVLAAAGVASRRNSEELIFEGRVTVNGSVCNT 178

Query: 1228 PQTRVDPGRDIIYVNGNRISKKLPPKVYLALNKPKGYICSSGVKETKSVISLLDDYLKSW 1049
            PQTRVDP RD+IYVNGNR+ KKLPPKVYLALNKPKGYICSSG KE+KSV+ L DDYLKSW
Sbjct: 179  PQTRVDPARDMIYVNGNRLPKKLPPKVYLALNKPKGYICSSGEKESKSVLCLFDDYLKSW 238

Query: 1048 NRINPGTPKPRLFTVGRLDVATTGLIIITNDGDFAQRISHPSSGLSKEYIAVVDGTVNKR 869
            N+ NPG PKPR+FTVGRLDVATTGLII+TNDGDFAQ++SHPSS LSKEYIA +DG VNKR
Sbjct: 239  NKQNPGVPKPRIFTVGRLDVATTGLIILTNDGDFAQKLSHPSSKLSKEYIATIDGVVNKR 298

Query: 868  HLTSISEGTIIEGVHCRPDSVELLPQPPDMSRPRLRIVVHEGRNHEVRELVKNAGLMLHS 689
            HL +ISEGT+IEGVHC PDSVELLP  P++S+PRLR+VVHEGRNHEVRELVK+AGL +HS
Sbjct: 299  HLIAISEGTVIEGVHCTPDSVELLPPQPNISKPRLRVVVHEGRNHEVRELVKSAGLQIHS 358

Query: 688  LKRVRIGGFRLPSDLGLGKHVELKQGDLKSLG 593
            LKR+RIGGFRLPSDLG GKHVELKQGDLK+LG
Sbjct: 359  LKRIRIGGFRLPSDLGHGKHVELKQGDLKALG 390


>ref|XP_004140075.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
            [Cucumis sativus] gi|449490423|ref|XP_004158601.1|
            PREDICTED: uncharacterized RNA pseudouridine synthase
            aq_1464-like [Cucumis sativus]
          Length = 398

 Score =  494 bits (1272), Expect = e-137
 Identities = 265/405 (65%), Positives = 300/405 (74%), Gaps = 16/405 (3%)
 Frame = -1

Query: 1759 MATTLSSSLHVILKPSLTSKPIFKTKAFPLLR-------------SITSKTDFNITFAXX 1619
            M +  SSSL ++ KPSL   PI   +A P +              S +S  +FNITFA  
Sbjct: 1    MVSLASSSLLLLSKPSLIFNPI---RAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPP 57

Query: 1618 XXXXXXXXXXXXXXXP---AVPLLIPWIVRGEDGQLKLQSTPPTQLLHDMANAXXXXXXX 1448
                                  L IPWIVRGEDG LKLQS PPT+ LH ++         
Sbjct: 58   KPKPKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKK 117

Query: 1447 XXXXXXXXXXXSPVLTSEPKYSKAARRFYNENFRDPPQRLSKLLAAAGVASRRSSEELIF 1268
                          +T  PK+SKAARRFYNEN R+  QRLSK+LAAAGVASRRSSEELIF
Sbjct: 118  KVSAGKP-------ITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIF 170

Query: 1267 GGKVTVNGSVCNTPQTRVDPGRDIIYVNGNRISKKLPPKVYLALNKPKGYICSSGVKETK 1088
            GG+VTVNGSVCNTPQTRVDP RDIIYVNGNR+ KKLPPKVYLALNKPKGYICSSG KE+K
Sbjct: 171  GGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESK 230

Query: 1087 SVISLLDDYLKSWNRINPGTPKPRLFTVGRLDVATTGLIIITNDGDFAQRISHPSSGLSK 908
            SVISL DDYLKSW++  PG PKPRLFTVGRLDVATTGLII+TNDGDFAQ ISHPSSGLSK
Sbjct: 231  SVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSK 290

Query: 907  EYIAVVDGTVNKRHLTSISEGTIIEGVHCRPDSVELLPQPPDMSRPRLRIVVHEGRNHEV 728
            EYIA +DGTV+K++L +ISEGTII+GVHC PDSVELLP+ PD+S+ RLRIVVHEGRNHEV
Sbjct: 291  EYIAAIDGTVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEV 350

Query: 727  RELVKNAGLMLHSLKRVRIGGFRLPSDLGLGKHVELKQGDLKSLG 593
            RELVK AGL ++SLKRVRIGGFRLPSDLGLG + ELKQ +LK++G
Sbjct: 351  RELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIG 395


>ref|XP_002311995.1| predicted protein [Populus trichocarpa] gi|222851815|gb|EEE89362.1|
            predicted protein [Populus trichocarpa]
          Length = 397

 Score =  494 bits (1272), Expect = e-137
 Identities = 268/401 (66%), Positives = 300/401 (74%), Gaps = 12/401 (2%)
 Frame = -1

Query: 1759 MATTLSS-----SLHVILKPSLT--SKPIFKTKAFPLLRSITSKTDFNITFAXXXXXXXX 1601
            MA +LS+      L    KPSL+  +K I  T+       IT+  +FNITFA        
Sbjct: 1    MAASLSTLHLHHQLTFFRKPSLSLLNKSIRPTR-------ITASLEFNITFAPPKPKPKL 53

Query: 1600 XXXXXXXXXP-AVP---LLIPWIVRGEDGQLKLQSTPPTQLLHDMANAXXXXXXXXXXXX 1433
                       ++P   L IPWIVRGEDG LKLQS PP +L+H +A+A            
Sbjct: 54   PANLQTDAASLSLPPGQLFIPWIVRGEDGNLKLQSNPPARLIHAIADAKTQPKKKKDKVK 113

Query: 1432 XXXXXXSPV-LTSEPKYSKAARRFYNENFRDPPQRLSKLLAAAGVASRRSSEELIFGGKV 1256
                      L +EP  SKAARRFYNENFRD  QRLSK+LAAAGVASRRSSE LIF GKV
Sbjct: 114  KESSGNVKAKLEAEPTRSKAARRFYNENFRDQAQRLSKVLAAAGVASRRSSEALIFEGKV 173

Query: 1255 TVNGSVCNTPQTRVDPGRDIIYVNGNRISKKLPPKVYLALNKPKGYICSSGVKETKSVIS 1076
            TVNGSVCNTPQTRVDPGRD IYVNGNR+ KKLPPK+Y+ALNKPKGYICS G KE+KSV+ 
Sbjct: 174  TVNGSVCNTPQTRVDPGRDSIYVNGNRLPKKLPPKIYIALNKPKGYICSLGEKESKSVMC 233

Query: 1075 LLDDYLKSWNRINPGTPKPRLFTVGRLDVATTGLIIITNDGDFAQRISHPSSGLSKEYIA 896
            LLDDY +SW++ NPG PKPRLFTVGRLDVATTGLII+TNDGDFAQ+I+HPSS LSKEYIA
Sbjct: 234  LLDDYFQSWDKRNPGLPKPRLFTVGRLDVATTGLIIVTNDGDFAQQIAHPSSNLSKEYIA 293

Query: 895  VVDGTVNKRHLTSISEGTIIEGVHCRPDSVELLPQPPDMSRPRLRIVVHEGRNHEVRELV 716
             VDG V+KRHL ++SEGT+IEGV C PDSVELLPQ PD  RPRLRIVVHEGRNHEVRELV
Sbjct: 294  TVDGVVSKRHLFAVSEGTVIEGVRCVPDSVELLPQQPDRPRPRLRIVVHEGRNHEVRELV 353

Query: 715  KNAGLMLHSLKRVRIGGFRLPSDLGLGKHVELKQGDLKSLG 593
            KNAGL +HSLKRVRIGGFRLPSDLGLGKH ELKQ DLK+LG
Sbjct: 354  KNAGLEIHSLKRVRIGGFRLPSDLGLGKHAELKQTDLKTLG 394


>ref|XP_002879786.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
            lyrata] gi|297325625|gb|EFH56045.1| pseudouridine
            synthase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 412

 Score =  476 bits (1225), Expect = e-132
 Identities = 242/341 (70%), Positives = 271/341 (79%), Gaps = 18/341 (5%)
 Frame = -1

Query: 1561 LLIPWIVRGEDGQLKLQSTPPTQLLHDMANAXXXXXXXXXXXXXXXXXXSPVLTS----- 1397
            L IPWIVRG+DG LKLQS PP +L+H++A                     P  TS     
Sbjct: 72   LFIPWIVRGDDGTLKLQSQPPARLIHNLA---IDATTQNPKKKDKPKKKQPQATSSSASA 128

Query: 1396 -------------EPKYSKAARRFYNENFRDPPQRLSKLLAAAGVASRRSSEELIFGGKV 1256
                         +PK SKAARRFYNENF++PPQRLSK+LAAAGVASRR+SEELIF GKV
Sbjct: 129  TASASSPASHSEVKPKLSKAARRFYNENFKEPPQRLSKVLAAAGVASRRTSEELIFDGKV 188

Query: 1255 TVNGSVCNTPQTRVDPGRDIIYVNGNRISKKLPPKVYLALNKPKGYICSSGVKETKSVIS 1076
            TVNG +CNTPQTRVDP RDIIYVNGNRI KKLPPKVY ALNKPKGYICSSG KE KSVIS
Sbjct: 189  TVNGILCNTPQTRVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEIKSVIS 248

Query: 1075 LLDDYLKSWNRINPGTPKPRLFTVGRLDVATTGLIIITNDGDFAQRISHPSSGLSKEYIA 896
            L D+YL SW++ NPGTPKPRLFTVGRLDVATTGLI++TNDGDFAQ++SHPSS L KEYI 
Sbjct: 249  LFDEYLSSWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEYIT 308

Query: 895  VVDGTVNKRHLTSISEGTIIEGVHCRPDSVELLPQPPDMSRPRLRIVVHEGRNHEVRELV 716
             V G ++KRHL +ISEGTI+EGVHC PDSVEL+P+  D+ R RLRIVVHEGRNHEVRELV
Sbjct: 309  TVVGDIHKRHLMAISEGTIVEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVRELV 368

Query: 715  KNAGLMLHSLKRVRIGGFRLPSDLGLGKHVELKQGDLKSLG 593
            KNAGL +HSLKRVRIGGFRLPSDLGLGKHVELKQ +LK++G
Sbjct: 369  KNAGLEVHSLKRVRIGGFRLPSDLGLGKHVELKQSELKAMG 409


>emb|CBI31423.3| unnamed protein product [Vitis vinifera]
          Length = 296

 Score =  475 bits (1222), Expect = e-131
 Identities = 228/268 (85%), Positives = 251/268 (93%)
 Frame = -1

Query: 1396 EPKYSKAARRFYNENFRDPPQRLSKLLAAAGVASRRSSEELIFGGKVTVNGSVCNTPQTR 1217
            EPKYSKAARRFYNENFRDPPQRLSK+LAAAGVASRR+SEELIF G+VTVNGSVCNTPQTR
Sbjct: 26   EPKYSKAARRFYNENFRDPPQRLSKVLAAAGVASRRNSEELIFEGRVTVNGSVCNTPQTR 85

Query: 1216 VDPGRDIIYVNGNRISKKLPPKVYLALNKPKGYICSSGVKETKSVISLLDDYLKSWNRIN 1037
            VDP RD+IYVNGNR+ KKLPPKVYLALNKPKGYICSSG KE+KSV+ L DDYLKSWN+ N
Sbjct: 86   VDPARDMIYVNGNRLPKKLPPKVYLALNKPKGYICSSGEKESKSVLCLFDDYLKSWNKQN 145

Query: 1036 PGTPKPRLFTVGRLDVATTGLIIITNDGDFAQRISHPSSGLSKEYIAVVDGTVNKRHLTS 857
            PG PKPR+FTVGRLDVATTGLII+TNDGDFAQ++SHPSS LSKEYIA +DG VNKRHL +
Sbjct: 146  PGVPKPRIFTVGRLDVATTGLIILTNDGDFAQKLSHPSSKLSKEYIATIDGVVNKRHLIA 205

Query: 856  ISEGTIIEGVHCRPDSVELLPQPPDMSRPRLRIVVHEGRNHEVRELVKNAGLMLHSLKRV 677
            ISEGT+IEGVHC PDSVELLP  P++S+PRLR+VVHEGRNHEVRELVK+AGL +HSLKR+
Sbjct: 206  ISEGTVIEGVHCTPDSVELLPPQPNISKPRLRVVVHEGRNHEVRELVKSAGLQIHSLKRI 265

Query: 676  RIGGFRLPSDLGLGKHVELKQGDLKSLG 593
            RIGGFRLPSDLG GKHVELKQGDLK+LG
Sbjct: 266  RIGGFRLPSDLGHGKHVELKQGDLKALG 293