BLASTX nr result
ID: Coptis23_contig00009272
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00009272
(1819 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera] 62 1e-20
emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera] 57 1e-19
gb|ABW74566.1| integrase [Boechera divaricarpa] 57 1e-16
gb|ABA95820.1| retrotransposon protein, putative, unclassified [... 56 1e-15
emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera] 62 1e-15
>emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera]
Length = 1183
Score = 61.6 bits (148), Expect(4) = 1e-20
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Frame = -1
Query: 1240 RQEVYGFVFSLGSGPISWCSKNQDTVEMSSSDAQYVTALSAAVRLIGCEG-F*KMCTRLR 1064
R+ G++FSLGSG + W SK Q +SSS+A+Y A S+A + + +
Sbjct: 1036 RKSTSGYMFSLGSGAVCWSSKKQAVTALSSSEAEYTAATSSACQAVWLRRILVDINQEHE 1095
Query: 1063 DATVIYCDSKSAISMTK 1013
+ TVIYCD+K+AI+MTK
Sbjct: 1096 EXTVIYCDNKAAIAMTK 1112
Score = 42.0 bits (97), Expect(4) = 1e-20
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = -3
Query: 1388 MHNSSIHHLGAAKRILHHIQGTGHYEIWYKPVSDF 1284
MH S HLGAAKR+L +I GT + IWY V +F
Sbjct: 985 MHCPSKQHLGAAKRLLRYIAGTYDFRIWYGHVQEF 1019
Score = 35.8 bits (81), Expect(4) = 1e-20
Identities = 23/44 (52%), Positives = 25/44 (56%)
Frame = -3
Query: 1037 QVSDFNDQVVDGFTKVLSFRKFVKFRSSLGVSYICNFASWGRDE 906
Q + N+QV D TK LS K V FRS LGV CNF S G E
Sbjct: 1142 QYCNTNEQVADVRTKALSRDKHVYFRSKLGV---CNFESRGSVE 1182
Score = 28.1 bits (61), Expect(4) = 1e-20
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -2
Query: 1278 VGYTDSD*AGFVDDRK 1231
VGYTDSD AG ++DRK
Sbjct: 1022 VGYTDSDWAGCLEDRK 1037
>emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]
Length = 1274
Score = 57.4 bits (137), Expect(4) = 1e-19
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = -1
Query: 1240 RQEVYGFVFSLGSGPISWCSKNQDTVEMSSSDAQYVTALSAAVRLIGCEG-F*KMCTRLR 1064
R+ G++FSLGSG + W SK Q +SS +A+Y A S+ + + +
Sbjct: 1127 RKSXSGYMFSLGSGAVCWSSKKQAVTALSSXEAEYTAATSSXCQAVWLRRILADINQEHE 1186
Query: 1063 DATVIYCDSKSAISMTK 1013
+ TVIYCD+K+AI+MTK
Sbjct: 1187 EPTVIYCDNKAAIAMTK 1203
Score = 41.2 bits (95), Expect(4) = 1e-19
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = -3
Query: 1388 MHNSSIHHLGAAKRILHHIQGTGHYEIWYKPVSDF 1284
MH S HLGAAKR+L +I GT + IWY V +F
Sbjct: 1076 MHCPSKQHLGAAKRLLRYIAGTYDFGIWYGHVQEF 1110
Score = 37.0 bits (84), Expect(4) = 1e-19
Identities = 23/44 (52%), Positives = 25/44 (56%)
Frame = -3
Query: 1037 QVSDFNDQVVDGFTKVLSFRKFVKFRSSLGVSYICNFASWGRDE 906
Q + N+QV D TK LS K V FRS LGV CNF S G E
Sbjct: 1233 QYCNTNEQVADVLTKALSRDKHVYFRSKLGV---CNFESRGSVE 1273
Score = 28.1 bits (61), Expect(4) = 1e-19
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -2
Query: 1278 VGYTDSD*AGFVDDRK 1231
VGYTDSD AG ++DRK
Sbjct: 1113 VGYTDSDWAGCLEDRK 1128
>gb|ABW74566.1| integrase [Boechera divaricarpa]
Length = 1165
Score = 56.6 bits (135), Expect(4) = 1e-16
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Frame = -1
Query: 1240 RQEVYGFVFSLGSGPISWCSKNQDTVEMSSSDAQYVTALSAAVRLIGCEGF*KMCTRLRD 1061
R+ G VF+LGSG + W SK Q+ +SSS+A+Y A +AA + + + ++
Sbjct: 1018 RKSTSGHVFNLGSGAVCWSSKKQNVTALSSSEAEYTAATAAACQAVWLRRILADIKQEQE 1077
Query: 1060 -ATVIYCDSKSAISMTK 1013
AT I+CD+K+ I+M K
Sbjct: 1078 KATTIFCDNKATIAMNK 1094
Score = 39.3 bits (90), Expect(4) = 1e-16
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = -3
Query: 1388 MHNSSIHHLGAAKRILHHIQGTGHYEIWYKPVSDF 1284
MH + H GAAKR+L +I T Y +WY VS F
Sbjct: 967 MHGPTKQHFGAAKRLLRYIARTAEYGLWYCSVSKF 1001
Score = 30.8 bits (68), Expect(4) = 1e-16
Identities = 18/34 (52%), Positives = 19/34 (55%)
Frame = -3
Query: 1022 NDQVVDGFTKVLSFRKFVKFRSSLGVSYICNFAS 921
N+Q D TK LS KF FRS LGV C F S
Sbjct: 1129 NEQSADVLTKALSRNKFDYFRSKLGV---CKFES 1159
Score = 26.9 bits (58), Expect(4) = 1e-16
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -2
Query: 1278 VGYTDSD*AGFVDDRK 1231
VG+TDSD AG V DRK
Sbjct: 1004 VGFTDSDWAGCVQDRK 1019
>gb|ABA95820.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1142
Score = 56.2 bits (134), Expect(4) = 1e-15
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Frame = -1
Query: 1225 GFVFSLGSGPISWCSKNQDTVEMSSSDAQYVTALSAAVRLIGCEGF*K-MCTRLRDATVI 1049
G+ FSLGSG SW +K Q+ V +SS++A+YV A A +++ + + + T I
Sbjct: 1008 GYAFSLGSGMCSWSTKKQNIVALSSAEAEYVAASKAVSQVVWLRRIMEDLGEKQYQPTTI 1067
Query: 1048 YCDSKSAISMTK 1013
YCDSKSAI++++
Sbjct: 1068 YCDSKSAIAISE 1079
Score = 38.5 bits (88), Expect(4) = 1e-15
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = -3
Query: 1388 MHNSSIHHLGAAKRILHHIQGTGHYEIWYKPVSD 1287
M + S + AAKR+L +I+GT Y IWYKPV +
Sbjct: 952 MSSPSQLNFTAAKRVLRYIKGTADYGIWYKPVKE 985
Score = 28.1 bits (61), Expect(4) = 1e-15
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 1022 NDQVVDGFTKVLSFRKFVKFRSSLGV 945
++Q+ D FTK LS KFV+ R +GV
Sbjct: 1114 DEQLADIFTKALSKEKFVRDRELIGV 1139
Score = 26.9 bits (58), Expect(4) = 1e-15
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -2
Query: 1278 VGYTDSD*AGFVDDRK 1231
+GYTDSD AG +DD K
Sbjct: 989 IGYTDSDWAGCLDDMK 1004
>emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]
Length = 1472
Score = 61.6 bits (148), Expect(3) = 1e-15
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Frame = -1
Query: 1240 RQEVYGFVFSLGSGPISWCSKNQDTVEMSSSDAQYVTALSAAVRLIGCEG-F*KMCTRLR 1064
R+ G++FSLGSG + W SK Q +SSS+A+Y A S+A + + +
Sbjct: 1116 RKSTSGYMFSLGSGAVCWSSKKQAVTALSSSEAEYTAATSSACQAVWLRRILADINQEHE 1175
Query: 1063 DATVIYCDSKSAISMTK 1013
+ TVIYCD+K+AI+MTK
Sbjct: 1176 EPTVIYCDNKAAIAMTK 1192
Score = 40.8 bits (94), Expect(3) = 1e-15
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = -3
Query: 1388 MHNSSIHHLGAAKRILHHIQGTGHYEIWYKPVSDF 1284
MH S HLGAAKR+L +I GT + IWY V +F
Sbjct: 1065 MHCPSKQHLGAAKRLLRYIVGTYDFGIWYGHVQEF 1099
Score = 28.1 bits (61), Expect(3) = 1e-15
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -2
Query: 1278 VGYTDSD*AGFVDDRK 1231
VGYTDSD AG ++DRK
Sbjct: 1102 VGYTDSDWAGCLEDRK 1117