BLASTX nr result
ID: Coptis23_contig00009241
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00009241
(364 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002510773.1| ATP-dependent RNA helicase, putative [Ricinu... 132 1e-50
ref|XP_002268542.1| PREDICTED: probable pre-mRNA-splicing factor... 132 1e-50
ref|XP_003632558.1| PREDICTED: probable pre-mRNA-splicing factor... 132 1e-50
emb|CAN82460.1| hypothetical protein VITISV_005515 [Vitis vinifera] 132 1e-50
ref|XP_002331832.1| predicted protein [Populus trichocarpa] gi|2... 131 3e-50
>ref|XP_002510773.1| ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223551474|gb|EEF52960.1| ATP-dependent RNA helicase,
putative [Ricinus communis]
Length = 1177
Score = 132 bits (333), Expect(3) = 1e-50
Identities = 65/70 (92%), Positives = 69/70 (98%)
Frame = +2
Query: 107 RMLTFGQRSKLSIEEQRQSLPIYRLKKELVQAVHDNQVLVVIGETGSGKTTQVTQYLAEA 286
+ LTFGQRSKLSI+EQRQSLPIY+LKKELVQAVHDNQVLVVIGETGSGKTTQVTQYLAEA
Sbjct: 505 KALTFGQRSKLSIQEQRQSLPIYKLKKELVQAVHDNQVLVVIGETGSGKTTQVTQYLAEA 564
Query: 287 GYTTKGKIGC 316
GYTT+GKIGC
Sbjct: 565 GYTTRGKIGC 574
Score = 76.3 bits (186), Expect(3) = 1e-50
Identities = 36/42 (85%), Positives = 37/42 (88%), Gaps = 4/42 (9%)
Frame = +1
Query: 1 IPKDLNRP----MPETGERHLAQELRGIGLSTYDMPEWKKDA 114
IPKDLNRP MPETGERHLAQELRG+GLS YDMPEWKKDA
Sbjct: 461 IPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDA 502
Score = 37.0 bits (84), Expect(3) = 1e-50
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +3
Query: 309 LDVAKRVAEEFGCRLGEE 362
+ VAKRVAEEFGCRLGEE
Sbjct: 583 MSVAKRVAEEFGCRLGEE 600
>ref|XP_002268542.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA
helicase-like isoform 2 [Vitis vinifera]
Length = 1175
Score = 132 bits (333), Expect(3) = 1e-50
Identities = 65/70 (92%), Positives = 69/70 (98%)
Frame = +2
Query: 107 RMLTFGQRSKLSIEEQRQSLPIYRLKKELVQAVHDNQVLVVIGETGSGKTTQVTQYLAEA 286
+ LTFGQRSKLSI+EQRQSLPIY+LKKELVQAVHDNQVLVVIGETGSGKTTQVTQYLAEA
Sbjct: 503 KALTFGQRSKLSIQEQRQSLPIYKLKKELVQAVHDNQVLVVIGETGSGKTTQVTQYLAEA 562
Query: 287 GYTTKGKIGC 316
GYTT+GKIGC
Sbjct: 563 GYTTRGKIGC 572
Score = 76.3 bits (186), Expect(3) = 1e-50
Identities = 36/42 (85%), Positives = 37/42 (88%), Gaps = 4/42 (9%)
Frame = +1
Query: 1 IPKDLNRP----MPETGERHLAQELRGIGLSTYDMPEWKKDA 114
IPKDLNRP MPETGERHLAQELRG+GLS YDMPEWKKDA
Sbjct: 459 IPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDA 500
Score = 37.0 bits (84), Expect(3) = 1e-50
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +3
Query: 309 LDVAKRVAEEFGCRLGEE 362
+ VAKRVAEEFGCRLGEE
Sbjct: 581 MSVAKRVAEEFGCRLGEE 598
>ref|XP_003632558.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA
helicase-like [Vitis vinifera]
Length = 1172
Score = 132 bits (333), Expect(3) = 1e-50
Identities = 65/70 (92%), Positives = 69/70 (98%)
Frame = +2
Query: 107 RMLTFGQRSKLSIEEQRQSLPIYRLKKELVQAVHDNQVLVVIGETGSGKTTQVTQYLAEA 286
+ LTFGQRSKLSI+EQRQSLPIY+LKKELVQAVHDNQVLVVIGETGSGKTTQVTQYLAEA
Sbjct: 500 KALTFGQRSKLSIQEQRQSLPIYKLKKELVQAVHDNQVLVVIGETGSGKTTQVTQYLAEA 559
Query: 287 GYTTKGKIGC 316
GYTT+GKIGC
Sbjct: 560 GYTTRGKIGC 569
Score = 76.3 bits (186), Expect(3) = 1e-50
Identities = 36/42 (85%), Positives = 37/42 (88%), Gaps = 4/42 (9%)
Frame = +1
Query: 1 IPKDLNRP----MPETGERHLAQELRGIGLSTYDMPEWKKDA 114
IPKDLNRP MPETGERHLAQELRG+GLS YDMPEWKKDA
Sbjct: 456 IPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDA 497
Score = 37.0 bits (84), Expect(3) = 1e-50
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +3
Query: 309 LDVAKRVAEEFGCRLGEE 362
+ VAKRVAEEFGCRLGEE
Sbjct: 578 MSVAKRVAEEFGCRLGEE 595
>emb|CAN82460.1| hypothetical protein VITISV_005515 [Vitis vinifera]
Length = 1162
Score = 132 bits (333), Expect(3) = 1e-50
Identities = 65/70 (92%), Positives = 69/70 (98%)
Frame = +2
Query: 107 RMLTFGQRSKLSIEEQRQSLPIYRLKKELVQAVHDNQVLVVIGETGSGKTTQVTQYLAEA 286
+ LTFGQRSKLSI+EQRQSLPIY+LKKELVQAVHDNQVLVVIGETGSGKTTQVTQYLAEA
Sbjct: 512 KALTFGQRSKLSIQEQRQSLPIYKLKKELVQAVHDNQVLVVIGETGSGKTTQVTQYLAEA 571
Query: 287 GYTTKGKIGC 316
GYTT+GKIGC
Sbjct: 572 GYTTRGKIGC 581
Score = 76.3 bits (186), Expect(3) = 1e-50
Identities = 36/42 (85%), Positives = 37/42 (88%), Gaps = 4/42 (9%)
Frame = +1
Query: 1 IPKDLNRP----MPETGERHLAQELRGIGLSTYDMPEWKKDA 114
IPKDLNRP MPETGERHLAQELRG+GLS YDMPEWKKDA
Sbjct: 468 IPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDA 509
Score = 37.0 bits (84), Expect(3) = 1e-50
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +3
Query: 309 LDVAKRVAEEFGCRLGEE 362
+ VAKRVAEEFGCRLGEE
Sbjct: 590 MSVAKRVAEEFGCRLGEE 607
>ref|XP_002331832.1| predicted protein [Populus trichocarpa] gi|222875070|gb|EEF12201.1|
predicted protein [Populus trichocarpa]
Length = 1171
Score = 131 bits (329), Expect(3) = 3e-50
Identities = 63/70 (90%), Positives = 69/70 (98%)
Frame = +2
Query: 107 RMLTFGQRSKLSIEEQRQSLPIYRLKKELVQAVHDNQVLVVIGETGSGKTTQVTQYLAEA 286
+ LT+GQRSKLSI+EQRQSLPIY+LKKEL+QAVHDNQVLVVIGETGSGKTTQVTQYLAEA
Sbjct: 499 KALTYGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEA 558
Query: 287 GYTTKGKIGC 316
GYTT+GKIGC
Sbjct: 559 GYTTRGKIGC 568
Score = 76.3 bits (186), Expect(3) = 3e-50
Identities = 36/42 (85%), Positives = 37/42 (88%), Gaps = 4/42 (9%)
Frame = +1
Query: 1 IPKDLNRP----MPETGERHLAQELRGIGLSTYDMPEWKKDA 114
IPKDLNRP MPETGERHLAQELRG+GLS YDMPEWKKDA
Sbjct: 455 IPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDA 496
Score = 37.0 bits (84), Expect(3) = 3e-50
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +3
Query: 309 LDVAKRVAEEFGCRLGEE 362
+ VAKRVAEEFGCRLGEE
Sbjct: 577 MSVAKRVAEEFGCRLGEE 594