BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00009223
         (895 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28722.3| unnamed protein product [Vitis vinifera]              401   e-109
ref|XP_003632339.1| PREDICTED: pentatricopeptide repeat-containi...   401   e-109
ref|XP_002306785.1| predicted protein [Populus trichocarpa] gi|2...   363   3e-98
ref|NP_171809.1| pentatricopeptide repeat-containing protein [Ar...   355   8e-96
ref|XP_002524751.1| pentatricopeptide repeat-containing protein,...   351   1e-94

>emb|CBI28722.3| unnamed protein product [Vitis vinifera]
          Length = 1361

 Score =  401 bits (1030), Expect = e-109
 Identities = 204/297 (68%), Positives = 244/297 (82%)
 Frame = +3

Query: 3    FNLALAGCLLFGTTRKAEQLLEMMPRVGIKADSNLLITMAHIYEINGHRDELKKLKRHID 182
            FN+ALAGCLLFGTTRKAE+LL+MMPRVG+K D NLLI MAHIYE NG R++L+KLKRHID
Sbjct: 829  FNIALAGCLLFGTTRKAEKLLDMMPRVGVKPDVNLLIIMAHIYERNGRREDLRKLKRHID 888

Query: 183  DTCNLGDLQYQQFYNCLLTCHLNFGDLSSASQMVLEMLSKAKKARNSLASATLTLEAVGT 362
            +  NL D+Q++QFYNCLLTCHL FGDL SAS MVLEML KA++ARNSL++ATL  EAVG+
Sbjct: 889  EAHNLSDIQFRQFYNCLLTCHLKFGDLDSASHMVLEMLRKAREARNSLSAATLMFEAVGS 948

Query: 363  RKFSSPTVNSRQARGLKKSDVLKHPIFVESSDLSYEEFCRDRNYVGLEAEAKETLDILLE 542
               S+    S ++   +KSD L++     S  +SYEEF RDRN++ LEAEAKE LD LL 
Sbjct: 949  GNTSTQEQVSEKSLSHRKSDGLENARPNTSLSISYEEFSRDRNFLKLEAEAKEILDRLLA 1008

Query: 543  NLQKRVELVTSECGILQPTEKIYAKLVKSFFEAGKVKELAEFLIKANKEDVPVAIENSAV 722
             LQ +VE +T+E GILQPTE+IY KLVK+F EAGK K+LAEFLIKA KED PV+ +NSA+
Sbjct: 1009 KLQMQVEFITTERGILQPTERIYVKLVKAFLEAGKTKQLAEFLIKAEKEDSPVSTDNSAL 1068

Query: 723  VHVISACISLGWLDQAHDLIDEMRFAGIRTGSSVYSALLKAYCKENRPLEISSLLRD 893
            VHVI++CI LGWLDQAHDL+DEMR AG+RTGSSVYS+LLKAYCK NR  EI+SLLRD
Sbjct: 1069 VHVINSCILLGWLDQAHDLLDEMRLAGVRTGSSVYSSLLKAYCKANRAGEITSLLRD 1125


>ref|XP_003632339.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03100,
            mitochondrial-like [Vitis vinifera]
          Length = 784

 Score =  401 bits (1030), Expect = e-109
 Identities = 204/297 (68%), Positives = 244/297 (82%)
 Frame = +3

Query: 3    FNLALAGCLLFGTTRKAEQLLEMMPRVGIKADSNLLITMAHIYEINGHRDELKKLKRHID 182
            FN+ALAGCLLFGTTRKAE+LL+MMPRVG+K D NLLI MAHIYE NG R++L+KLKRHID
Sbjct: 252  FNIALAGCLLFGTTRKAEKLLDMMPRVGVKPDVNLLIIMAHIYERNGRREDLRKLKRHID 311

Query: 183  DTCNLGDLQYQQFYNCLLTCHLNFGDLSSASQMVLEMLSKAKKARNSLASATLTLEAVGT 362
            +  NL D+Q++QFYNCLLTCHL FGDL SAS MVLEML KA++ARNSL++ATL  EAVG+
Sbjct: 312  EAHNLSDIQFRQFYNCLLTCHLKFGDLDSASHMVLEMLRKAREARNSLSAATLMFEAVGS 371

Query: 363  RKFSSPTVNSRQARGLKKSDVLKHPIFVESSDLSYEEFCRDRNYVGLEAEAKETLDILLE 542
               S+    S ++   +KSD L++     S  +SYEEF RDRN++ LEAEAKE LD LL 
Sbjct: 372  GNTSTQEQVSEKSLSHRKSDGLENARPNTSLSISYEEFSRDRNFLKLEAEAKEILDRLLA 431

Query: 543  NLQKRVELVTSECGILQPTEKIYAKLVKSFFEAGKVKELAEFLIKANKEDVPVAIENSAV 722
             LQ +VE +T+E GILQPTE+IY KLVK+F EAGK K+LAEFLIKA KED PV+ +NSA+
Sbjct: 432  KLQMQVEFITTERGILQPTERIYVKLVKAFLEAGKTKQLAEFLIKAEKEDSPVSTDNSAL 491

Query: 723  VHVISACISLGWLDQAHDLIDEMRFAGIRTGSSVYSALLKAYCKENRPLEISSLLRD 893
            VHVI++CI LGWLDQAHDL+DEMR AG+RTGSSVYS+LLKAYCK NR  EI+SLLRD
Sbjct: 492  VHVINSCILLGWLDQAHDLLDEMRLAGVRTGSSVYSSLLKAYCKANRAGEITSLLRD 548


>ref|XP_002306785.1| predicted protein [Populus trichocarpa] gi|222856234|gb|EEE93781.1|
            predicted protein [Populus trichocarpa]
          Length = 750

 Score =  363 bits (932), Expect = 3e-98
 Identities = 189/296 (63%), Positives = 232/296 (78%)
 Frame = +3

Query: 6    NLALAGCLLFGTTRKAEQLLEMMPRVGIKADSNLLITMAHIYEINGHRDELKKLKRHIDD 185
            N+AL GCLLFGTTRKAEQLL+MMPR+GI+AD+NLLI MAHIYE NG R+EL+KL+RHIDD
Sbjct: 222  NIALTGCLLFGTTRKAEQLLDMMPRIGIRADTNLLIIMAHIYERNGRREELRKLQRHIDD 281

Query: 186  TCNLGDLQYQQFYNCLLTCHLNFGDLSSASQMVLEMLSKAKKARNSLASATLTLEAVGTR 365
            + +L D Q++QFYNCLLTCHL FGDL +AS MVL ML KA++ARNS A+A L        
Sbjct: 282  SQSLTDTQFRQFYNCLLTCHLKFGDLDAASNMVLIMLRKAREARNSFATAALLFPI---D 338

Query: 366  KFSSPTVNSRQARGLKKSDVLKHPIFVESSDLSYEEFCRDRNYVGLEAEAKETLDILLEN 545
            K SSP   S ++   K+S  L +    +   +SYEEF RDRN++ L+ EAKE L  LL  
Sbjct: 339  KKSSPGPVSEESLSHKESGGLGNNRSNKDLTISYEEFYRDRNFLKLDTEAKEVLSTLLVE 398

Query: 546  LQKRVELVTSECGILQPTEKIYAKLVKSFFEAGKVKELAEFLIKANKEDVPVAIENSAVV 725
            LQ +VEL+T+E GILQPTEKIY KLVK+F E+GK KELA FLIKA KED P + ++SA+V
Sbjct: 399  LQMQVELITTERGILQPTEKIYVKLVKAFLESGKTKELAAFLIKAEKEDSPASNDDSALV 458

Query: 726  HVISACISLGWLDQAHDLIDEMRFAGIRTGSSVYSALLKAYCKENRPLEISSLLRD 893
            HVI++CISLGWLDQAHDL+DEM  AGIRT SSVY++LLKAYCK N+  E+++LLRD
Sbjct: 459  HVINSCISLGWLDQAHDLLDEMCLAGIRTSSSVYASLLKAYCKANQTGEVTALLRD 514


>ref|NP_171809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75200246|sp|Q9SA60.1|PPR6_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At1g03100, mitochondrial; Flags: Precursor
            gi|4587568|gb|AAD25799.1|AC006550_7 Contains PF|00637
            Clathrin 7-fold repeat. EST gb|AA721862 comes from this
            gene [Arabidopsis thaliana] gi|44917465|gb|AAS49057.1|
            At1g03100 [Arabidopsis thaliana]
            gi|332189408|gb|AEE27529.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 793

 Score =  355 bits (911), Expect = 8e-96
 Identities = 177/296 (59%), Positives = 230/296 (77%)
 Frame = +3

Query: 6    NLALAGCLLFGTTRKAEQLLEMMPRVGIKADSNLLITMAHIYEINGHRDELKKLKRHIDD 185
            N+ALAGCLLFGTTRKAEQLL+M+P++G+KAD+NLL+ MAHIYE NG R+EL+KL+RHID+
Sbjct: 262  NVALAGCLLFGTTRKAEQLLDMIPKIGVKADANLLVIMAHIYERNGRREELRKLQRHIDE 321

Query: 186  TCNLGDLQYQQFYNCLLTCHLNFGDLSSASQMVLEMLSKAKKARNSLASATLTLEAVGTR 365
             CNL + Q+ QFYNCLL CHL FGDL SAS+MVLEML + K ARNSL +A L  +     
Sbjct: 322  ACNLNESQFWQFYNCLLMCHLKFGDLESASKMVLEMLRRGKVARNSLGAAILEFDTADDG 381

Query: 366  KFSSPTVNSRQARGLKKSDVLKHPIFVESSDLSYEEFCRDRNYVGLEAEAKETLDILLEN 545
            +  +  V+ + +  +K+ D  +  +    S + Y+EF RDR ++ LEAEAK+ L  LL  
Sbjct: 382  RLYTKRVSGKGSE-VKEHDNPETRVVSIHSMIPYDEFSRDRKFLKLEAEAKDVLGALLAK 440

Query: 546  LQKRVELVTSECGILQPTEKIYAKLVKSFFEAGKVKELAEFLIKANKEDVPVAIENSAVV 725
            L  +VEL+TSE G+LQPTE+IY KL K+F E+GK+KELA+FL+KA  ED PV+ +NS ++
Sbjct: 441  LHVQVELITSERGVLQPTEEIYVKLAKAFLESGKMKELAKFLLKAEHEDSPVSSDNSMLI 500

Query: 726  HVISACISLGWLDQAHDLIDEMRFAGIRTGSSVYSALLKAYCKENRPLEISSLLRD 893
            +VI+ACISLG LDQAHDL+DEMR AG+RTGSSVYS+LLKAYC  N+  E++SLLRD
Sbjct: 501  NVINACISLGMLDQAHDLLDEMRMAGVRTGSSVYSSLLKAYCNTNQTREVTSLLRD 556


>ref|XP_002524751.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223535935|gb|EEF37594.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 787

 Score =  351 bits (901), Expect = 1e-94
 Identities = 181/299 (60%), Positives = 230/299 (76%), Gaps = 3/299 (1%)
 Frame = +3

Query: 6    NLALAGCLLFGTTRKAEQLLEMMPRVGIKADSNLLITMAHIYEINGHRDELKKLKRHIDD 185
            N+ALAGCL+FGTTRKAEQLL+++PRVGIK ++ LLITMAHIYE NG R EL KL+RHID+
Sbjct: 259  NIALAGCLVFGTTRKAEQLLDLIPRVGIKVNATLLITMAHIYERNGRRQELMKLQRHIDE 318

Query: 186  TCNLGDLQYQQFYNCLLTCHLNFGDLSSASQMVLEMLSKAKKARNSLASATLTLEAVGT- 362
              ++ D+QY+QFYNCLL+CHL FGDL SAS MVL+ML KAK+ARNSLA+A    +A    
Sbjct: 319  AHSISDIQYRQFYNCLLSCHLKFGDLDSASDMVLKMLWKAKEARNSLAAAKFVYQADSKS 378

Query: 363  --RKFSSPTVNSRQARGLKKSDVLKHPIFVESSDLSYEEFCRDRNYVGLEAEAKETLDIL 536
               + S  +VN R+  GL KS   + P+      +S+ EF +DR+++ L+AEAK  LD L
Sbjct: 379  SHEQISPDSVNHREPDGLNKSRPNRTPM------ISHGEFLKDRDFLKLDAEAKGLLDSL 432

Query: 537  LENLQKRVELVTSECGILQPTEKIYAKLVKSFFEAGKVKELAEFLIKANKEDVPVAIENS 716
            L  LQ +VEL+T++ GILQPTEK+Y KLVK+F E+GK KELA FL KA KED P + ++S
Sbjct: 433  LAKLQTQVELITTDRGILQPTEKVYVKLVKAFLESGKTKELAAFLYKAEKEDSPSSNDDS 492

Query: 717  AVVHVISACISLGWLDQAHDLIDEMRFAGIRTGSSVYSALLKAYCKENRPLEISSLLRD 893
             +VHVI++CISL WLDQAHDL+DEMR AG+R  SSVY++LLKAYCK NR  E+ +LLRD
Sbjct: 493  PLVHVINSCISLDWLDQAHDLLDEMRVAGVRMSSSVYASLLKAYCKANRAGEVKALLRD 551