BLASTX nr result
ID: Coptis23_contig00009211
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00009211
(2687 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002266779.1| PREDICTED: RNA-binding protein 38 [Vitis vin... 216 3e-53
emb|CAN73746.1| hypothetical protein VITISV_041364 [Vitis vinifera] 216 3e-53
ref|XP_003540599.1| PREDICTED: RNA-binding protein 38-like [Glyc... 215 6e-53
tpg|DAA56566.1| TPA: hypothetical protein ZEAMMB73_877814 [Zea m... 213 2e-52
tpg|DAA56565.1| TPA: hypothetical protein ZEAMMB73_877814 [Zea m... 213 2e-52
>ref|XP_002266779.1| PREDICTED: RNA-binding protein 38 [Vitis vinifera]
gi|297734754|emb|CBI16988.3| unnamed protein product
[Vitis vinifera]
Length = 264
Score = 216 bits (550), Expect = 3e-53
Identities = 103/119 (86%), Positives = 110/119 (92%)
Frame = -2
Query: 2461 MTPANLASQFGDTTYTKVFVGGLAWETQRETMRKYFEQFGEILEAVVITDKNTGRSKGYG 2282
MTPANLA QFGDTTYTKVFVGGLAWETQ+ETM+KYFEQFGEILEAVVITDK TGRSKGYG
Sbjct: 1 MTPANLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKTTGRSKGYG 60
Query: 2281 FVTFREQEAAMRACVDPSPVIDGRRANCNLASLGVQKSRPGTPKQGGARNFRVMNSFHS 2105
FVTFRE +AAMRACVD +PVIDGRRANCNLASLGVQ+S+P TPK GG RNFRVM SF +
Sbjct: 61 FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGRNFRVMGSFQT 119
Score = 100 bits (250), Expect = 2e-18
Identities = 46/66 (69%), Positives = 55/66 (83%), Gaps = 2/66 (3%)
Frame = -1
Query: 1943 YPTSYYNVYGGGAATQYPMYGGGSNGMMTGATAAYYPYLQFGQGNGGNTSA--YTTGQGY 1770
YPTSYY+VYGG AA QYP+YG G GMMTGA AA+YPYLQFG+G+GG ++ YT+GQGY
Sbjct: 160 YPTSYYSVYGGAAA-QYPVYGAGPGGMMTGAGAAFYPYLQFGEGSGGAAASGGYTSGQGY 218
Query: 1769 SLQYPH 1752
+QYPH
Sbjct: 219 GVQYPH 224
>emb|CAN73746.1| hypothetical protein VITISV_041364 [Vitis vinifera]
Length = 269
Score = 216 bits (550), Expect = 3e-53
Identities = 103/119 (86%), Positives = 110/119 (92%)
Frame = -2
Query: 2461 MTPANLASQFGDTTYTKVFVGGLAWETQRETMRKYFEQFGEILEAVVITDKNTGRSKGYG 2282
MTPANLA QFGDTTYTKVFVGGLAWETQ+ETM+KYFEQFGEILEAVVITDK TGRSKGYG
Sbjct: 1 MTPANLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKTTGRSKGYG 60
Query: 2281 FVTFREQEAAMRACVDPSPVIDGRRANCNLASLGVQKSRPGTPKQGGARNFRVMNSFHS 2105
FVTFRE +AAMRACVD +PVIDGRRANCNLASLGVQ+S+P TPK GG RNFRVM SF +
Sbjct: 61 FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGRNFRVMGSFQT 119
Score = 100 bits (250), Expect = 2e-18
Identities = 46/66 (69%), Positives = 55/66 (83%), Gaps = 2/66 (3%)
Frame = -1
Query: 1943 YPTSYYNVYGGGAATQYPMYGGGSNGMMTGATAAYYPYLQFGQGNGGNTSA--YTTGQGY 1770
YPTSYY+VYGG AA QYP+YG G GMMTGA AA+YPYLQFG+G+GG ++ YT+GQGY
Sbjct: 160 YPTSYYSVYGGAAA-QYPVYGAGPGGMMTGAGAAFYPYLQFGEGSGGAAASGGYTSGQGY 218
Query: 1769 SLQYPH 1752
+QYPH
Sbjct: 219 GVQYPH 224
>ref|XP_003540599.1| PREDICTED: RNA-binding protein 38-like [Glycine max]
Length = 267
Score = 215 bits (547), Expect = 6e-53
Identities = 105/120 (87%), Positives = 111/120 (92%), Gaps = 1/120 (0%)
Frame = -2
Query: 2461 MTPANLASQFGDTTYTKVFVGGLAWETQRETMRKYFEQFGEILEAVVITDKNTGRSKGYG 2282
MTP NLA QFGDTTYTKVFVGGLAWETQ+ETM+KYFEQFGEILEAVVITDK TGRSKGYG
Sbjct: 1 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYG 60
Query: 2281 FVTFREQEAAMRACVDPSPVIDGRRANCNLASLGVQKSRPGTPKQGGA-RNFRVMNSFHS 2105
FVTFRE EAAMRACVDP+PVIDGRRANCNLASLGVQ+S+P TPK GGA RNFRVM SF +
Sbjct: 61 FVTFREPEAAMRACVDPAPVIDGRRANCNLASLGVQRSKPSTPKHGGAGRNFRVMGSFQT 120
Score = 72.4 bits (176), Expect = 6e-10
Identities = 39/68 (57%), Positives = 48/68 (70%), Gaps = 5/68 (7%)
Frame = -1
Query: 1943 YPTSYYNVYGGGAATQYPMYGGG----SNGMMTGATAAYYPYLQF-GQGNGGNTSAYTTG 1779
YPTSYY VY GGA QYP+YG G + GMM+G AA+YPYLQ+ G+G+GG T+G
Sbjct: 161 YPTSYYGVY-GGATAQYPVYGSGPAAAAGGMMSGG-AAFYPYLQYGGEGSGGGG---TSG 215
Query: 1778 QGYSLQYP 1755
QGY + YP
Sbjct: 216 QGYGVNYP 223
>tpg|DAA56566.1| TPA: hypothetical protein ZEAMMB73_877814 [Zea mays]
Length = 264
Score = 213 bits (543), Expect = 2e-52
Identities = 101/118 (85%), Positives = 111/118 (94%)
Frame = -2
Query: 2461 MTPANLASQFGDTTYTKVFVGGLAWETQRETMRKYFEQFGEILEAVVITDKNTGRSKGYG 2282
M+P ++ QFGDTTYTKVFVGGLAWETQ+ETMRKYFEQFGEILEAVVITDKNTGRSKGYG
Sbjct: 1 MSPPSVMGQFGDTTYTKVFVGGLAWETQKETMRKYFEQFGEILEAVVITDKNTGRSKGYG 60
Query: 2281 FVTFREQEAAMRACVDPSPVIDGRRANCNLASLGVQKSRPGTPKQGGARNFRVMNSFH 2108
FVTFR+ +AAMRACVDP+PVIDGRRANCNLASLGVQ+SRP TP+ GGARNFRVM SF+
Sbjct: 61 FVTFRDPDAAMRACVDPAPVIDGRRANCNLASLGVQRSRPPTPQHGGARNFRVMKSFN 118
Score = 78.2 bits (191), Expect = 1e-11
Identities = 38/64 (59%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Frame = -1
Query: 1943 YPTSYYNVYGGGAATQYPMYGGGSNGMMTGATAAYYPYLQFGQGNGGNTSAYTTGQGYSL 1764
YPT++YN+YGG QYP YGG + GM+TG T+ +YPY QFGQ +G T+ YT+GQGY+L
Sbjct: 162 YPTNFYNIYGGA---QYPFYGGATAGMVTG-TSPFYPYFQFGQ-SGNTTTNYTSGQGYNL 216
Query: 1763 -QYP 1755
QYP
Sbjct: 217 QQYP 220
>tpg|DAA56565.1| TPA: hypothetical protein ZEAMMB73_877814 [Zea mays]
Length = 295
Score = 213 bits (543), Expect = 2e-52
Identities = 101/118 (85%), Positives = 111/118 (94%)
Frame = -2
Query: 2461 MTPANLASQFGDTTYTKVFVGGLAWETQRETMRKYFEQFGEILEAVVITDKNTGRSKGYG 2282
M+P ++ QFGDTTYTKVFVGGLAWETQ+ETMRKYFEQFGEILEAVVITDKNTGRSKGYG
Sbjct: 1 MSPPSVMGQFGDTTYTKVFVGGLAWETQKETMRKYFEQFGEILEAVVITDKNTGRSKGYG 60
Query: 2281 FVTFREQEAAMRACVDPSPVIDGRRANCNLASLGVQKSRPGTPKQGGARNFRVMNSFH 2108
FVTFR+ +AAMRACVDP+PVIDGRRANCNLASLGVQ+SRP TP+ GGARNFRVM SF+
Sbjct: 61 FVTFRDPDAAMRACVDPAPVIDGRRANCNLASLGVQRSRPPTPQHGGARNFRVMKSFN 118
Score = 78.2 bits (191), Expect = 1e-11
Identities = 38/64 (59%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Frame = -1
Query: 1943 YPTSYYNVYGGGAATQYPMYGGGSNGMMTGATAAYYPYLQFGQGNGGNTSAYTTGQGYSL 1764
YPT++YN+YGG QYP YGG + GM+TG T+ +YPY QFGQ +G T+ YT+GQGY+L
Sbjct: 162 YPTNFYNIYGGA---QYPFYGGATAGMVTG-TSPFYPYFQFGQ-SGNTTTNYTSGQGYNL 216
Query: 1763 -QYP 1755
QYP
Sbjct: 217 QQYP 220