BLASTX nr result

ID: Coptis23_contig00009203 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00009203
         (470 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002531995.1| conserved hypothetical protein [Ricinus comm...    67   2e-09

>ref|XP_002531995.1| conserved hypothetical protein [Ricinus communis]
           gi|223528354|gb|EEF30394.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 374

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 40/104 (38%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
 Frame = +2

Query: 23  SVLGEYFDDISWKLKDGGW-SDXXXXXXXXXXXXXKRRVVCLKDKDS---------VAWH 172
           S LG+  +D+ WKL+DGGW  +             KR   C  D D          V WH
Sbjct: 249 SSLGDCLEDVFWKLRDGGWREEDVREMMMIDGCDEKRENGCGGDGDGGRVQNGKLDVVWH 308

Query: 173 VKFLSLSLLRAGWSKEDVVYSFGFEDGVVPDVNSSLDVQDSNSN 304
           V+ LS+ LLRAGWS+EDVVYS   +D  + D    LD    N++
Sbjct: 309 VRVLSVVLLRAGWSREDVVYSLDLQD--LEDSKCCLDFPPPNTS 350


Top