BLASTX nr result

ID: Coptis23_contig00009159 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00009159
         (504 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI29444.3| unnamed protein product [Vitis vinifera]               95   7e-18
ref|XP_003601935.1| EPIDERMAL PATTERNING FACTOR-like protein [Me...    87   2e-15
ref|XP_002306302.1| predicted protein [Populus trichocarpa] gi|2...    82   5e-14
ref|XP_002309970.1| predicted protein [Populus trichocarpa] gi|2...    78   7e-13
gb|AFK44480.1| unknown [Lotus japonicus]                               75   7e-12

>emb|CBI29444.3| unnamed protein product [Vitis vinifera]
          Length = 157

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 48/83 (57%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
 Frame = -1

Query: 246 SSRTM-SLNHELLQTTAVFIFILHLLCFQASCFHQQPPSTLQQGVVTEEKMRLGSRPPSC 70
           +S TM SL   LL T  V   +LHLL   ASCF QQ  S   +G++ EEK RLGS PPSC
Sbjct: 19  ASHTMNSLGSYLLYTITVVTAVLHLLLSPASCFSQQQGSDSTRGLLFEEKTRLGSTPPSC 78

Query: 69  YNRCSECHPCMAVQVPTTPIQPG 1
           +N+C+ECHPCMAVQVPT P   G
Sbjct: 79  HNKCNECHPCMAVQVPTLPSHSG 101


>ref|XP_003601935.1| EPIDERMAL PATTERNING FACTOR-like protein [Medicago truncatula]
           gi|355490983|gb|AES72186.1| EPIDERMAL PATTERNING
           FACTOR-like protein [Medicago truncatula]
          Length = 121

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 42/78 (53%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
 Frame = -1

Query: 231 SLNHELLQTTAVFIFILHLLCFQASCFHQQPPSTLQQGVVTEEKMRLGSRPPSCYNRCSE 52
           SLN   L    V IFI HLL + ASCF+Q   +   +G++ EEK RLGS PP+C+N+C++
Sbjct: 3   SLNSYHLILLMVIIFIPHLLLYPASCFYQPHSAIPPRGLLFEEKNRLGSAPPTCHNKCNQ 62

Query: 51  CHPCMAVQVPT-TPIQPG 1
           CHPCMAVQVP+   +QPG
Sbjct: 63  CHPCMAVQVPSHEHVQPG 80


>ref|XP_002306302.1| predicted protein [Populus trichocarpa] gi|222855751|gb|EEE93298.1|
           predicted protein [Populus trichocarpa]
          Length = 128

 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 42/82 (51%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
 Frame = -1

Query: 246 SSRTMSLNHELLQTTAVFIFILHLLCFQASCF--HQQPPSTLQQGVVTEEKMRLGSRPPS 73
           S R +  +  L+ TTA+ I+ L    +  SCF  H QPP T  QG+  EEK RLGS PPS
Sbjct: 3   SCRLLPASRSLVLTTAISIYFL---LYPVSCFDQHLQPP-TSPQGIAFEEKARLGSTPPS 58

Query: 72  CYNRCSECHPCMAVQVPTTPIQ 7
           C+N+C+ CHPC+AVQVP  P Q
Sbjct: 59  CHNKCNGCHPCIAVQVPALPSQ 80


>ref|XP_002309970.1| predicted protein [Populus trichocarpa] gi|222852873|gb|EEE90420.1|
           predicted protein [Populus trichocarpa]
          Length = 126

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 36/63 (57%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
 Frame = -1

Query: 186 ILHLLCFQASCFHQ---QPPSTLQQGVVTEEKMRLGSRPPSCYNRCSECHPCMAVQVPTT 16
           +LH+L     CF Q   QPP    +G   EEK RLGS PPSC+N+C+ CHPCMAVQVPT 
Sbjct: 15  LLHILLSTVFCFAQHDLQPPIASHEGAAFEEKARLGSTPPSCHNKCNGCHPCMAVQVPTL 74

Query: 15  PIQ 7
           P Q
Sbjct: 75  PNQ 77


>gb|AFK44480.1| unknown [Lotus japonicus]
          Length = 127

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 31/62 (50%), Positives = 42/62 (67%)
 Frame = -1

Query: 198 VFIFILHLLCFQASCFHQQPPSTLQQGVVTEEKMRLGSRPPSCYNRCSECHPCMAVQVPT 19
           V +F+LH L    SC +Q  P+   +    +EK RLGS PP+C+N+C++CHPCMAVQVP 
Sbjct: 20  VMVFLLHHLLCPVSCINQPQPAIPPRDQFLDEKNRLGSMPPTCHNKCNQCHPCMAVQVPN 79

Query: 18  TP 13
            P
Sbjct: 80  LP 81


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