BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00009116
         (2737 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634146.1| PREDICTED: ATP-dependent Clp protease ATP-bi...   577   0.0  
ref|XP_002272792.1| PREDICTED: ATP-dependent Clp protease ATP-bi...   573   0.0  
emb|CBI23009.3| unnamed protein product [Vitis vinifera]              570   0.0  
ref|XP_002516670.1| ATP-dependent clp protease ATP-binding subun...   566   0.0  
ref|XP_002864237.1| hypothetical protein ARALYDRAFT_918413 [Arab...   568   0.0  

>ref|XP_003634146.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like
            isoform 2 [Vitis vinifera]
          Length = 577

 Score =  577 bits (1488), Expect(2) = 0.0
 Identities = 297/336 (88%), Positives = 316/336 (94%), Gaps = 3/336 (0%)
 Frame = +3

Query: 876  GSG---NSKDGSWGGANMGNDFPTPKEICQGLDKFVIGQERAKKVLSVAVYNHYKRIYFE 1046
            GSG   NSKD SWGG+N+G++FPTPKEIC+GLDKFVIGQERAKKVLSVAVYNHYKRIY +
Sbjct: 142  GSGFGSNSKDESWGGSNLGHNFPTPKEICRGLDKFVIGQERAKKVLSVAVYNHYKRIYHQ 201

Query: 1047 SQPKCAEGSTNGEDNDSVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQ 1226
            S  KC +      DNDSVELEKSN+LLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQ
Sbjct: 202  SLQKC-DDKAEATDNDSVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQ 260

Query: 1227 AGYVGEDVESILYKLLMVADYNVEAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQA 1406
            AGYVGEDVESILYKLLMVADYNV AAQQGIVYIDEVDKITKKAESLN+SRDVSGEGVQQA
Sbjct: 261  AGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNLSRDVSGEGVQQA 320

Query: 1407 LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFG 1586
            LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFG
Sbjct: 321  LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFG 380

Query: 1587 APVRANMRTGGLTNAAITSSLLETVESSDLIAYGLIPEFVGRFPVLVSLSALSEDQLVQV 1766
            APVRANMRTGG T+AA+ SSLLETVESSDLI+YGLIPEFVGRFP+LVSLSAL+E+QLV+V
Sbjct: 381  APVRANMRTGGPTDAAVASSLLETVESSDLISYGLIPEFVGRFPILVSLSALTENQLVEV 440

Query: 1767 LIEPKNALGKQYRKMFQMNDVKLHFTEVALRLIARK 1874
            L EPKNALGKQY+KMFQMN VKLHFT+ ALRLI+RK
Sbjct: 441  LTEPKNALGKQYKKMFQMNGVKLHFTKNALRLISRK 476



 Score =  122 bits (307), Expect(2) = 0.0
 Identities = 68/101 (67%), Positives = 80/101 (79%), Gaps = 1/101 (0%)
 Frame = +1

Query: 1972 MARSTGARGLRSLLENILMDAMYEIPDLETGKDKIDAVVVDEEAVGSMERSGRGAKILYG 2151
            M+++TGARGLRS+LENILM+AMYEIPD+ TG D IDAVVVD+EAVGS +  G GAKILYG
Sbjct: 478  MSKNTGARGLRSILENILMNAMYEIPDVRTGNDIIDAVVVDDEAVGS-DGHGFGAKILYG 536

Query: 2152 DGAFELYLSQQKSKEFETREEG-SERMPDAEPELPSIVVSM 2271
             GA + YLSQ K KE ET  EG S+   +AE E+PSIV SM
Sbjct: 537  KGALDCYLSQHKLKETETPMEGSSDGEAEAEAEIPSIVASM 577


>ref|XP_002272792.1| PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like
            isoform 1 [Vitis vinifera]
          Length = 583

 Score =  573 bits (1476), Expect(2) = 0.0
 Identities = 297/341 (87%), Positives = 317/341 (92%), Gaps = 8/341 (2%)
 Frame = +3

Query: 876  GSG---NSKDGSWGGANMGNDFPTPKEICQGLDKFVIGQERAKKVLSVAVYNHYKRIYFE 1046
            GSG   NSKD SWGG+N+G++FPTPKEIC+GLDKFVIGQERAKKVLSVAVYNHYKRIY +
Sbjct: 142  GSGFGSNSKDESWGGSNLGHNFPTPKEICRGLDKFVIGQERAKKVLSVAVYNHYKRIYHQ 201

Query: 1047 SQPKCAEGSTNGE-----DNDSVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADA 1211
            S  K     T+ +     DNDSVELEKSN+LLMGPTGSGKTLLAKTLARFVNVPFVIADA
Sbjct: 202  SLQKWPAEDTSDDKAEATDNDSVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADA 261

Query: 1212 TTLTQAGYVGEDVESILYKLLMVADYNVEAAQQGIVYIDEVDKITKKAESLNISRDVSGE 1391
            TTLTQAGYVGEDVESILYKLLMVADYNV AAQQGIVYIDEVDKITKKAESLN+SRDVSGE
Sbjct: 262  TTLTQAGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNLSRDVSGE 321

Query: 1392 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDS 1571
            GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDS
Sbjct: 322  GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDS 381

Query: 1572 SIGFGAPVRANMRTGGLTNAAITSSLLETVESSDLIAYGLIPEFVGRFPVLVSLSALSED 1751
            SIGFGAPVRANMRTGG T+AA+ SSLLETVESSDLI+YGLIPEFVGRFP+LVSLSAL+E+
Sbjct: 382  SIGFGAPVRANMRTGGPTDAAVASSLLETVESSDLISYGLIPEFVGRFPILVSLSALTEN 441

Query: 1752 QLVQVLIEPKNALGKQYRKMFQMNDVKLHFTEVALRLIARK 1874
            QLV+VL EPKNALGKQY+KMFQMN VKLHFT+ ALRLI+RK
Sbjct: 442  QLVEVLTEPKNALGKQYKKMFQMNGVKLHFTKNALRLISRK 482



 Score =  122 bits (307), Expect(2) = 0.0
 Identities = 68/101 (67%), Positives = 80/101 (79%), Gaps = 1/101 (0%)
 Frame = +1

Query: 1972 MARSTGARGLRSLLENILMDAMYEIPDLETGKDKIDAVVVDEEAVGSMERSGRGAKILYG 2151
            M+++TGARGLRS+LENILM+AMYEIPD+ TG D IDAVVVD+EAVGS +  G GAKILYG
Sbjct: 484  MSKNTGARGLRSILENILMNAMYEIPDVRTGNDIIDAVVVDDEAVGS-DGHGFGAKILYG 542

Query: 2152 DGAFELYLSQQKSKEFETREEG-SERMPDAEPELPSIVVSM 2271
             GA + YLSQ K KE ET  EG S+   +AE E+PSIV SM
Sbjct: 543  KGALDCYLSQHKLKETETPMEGSSDGEAEAEAEIPSIVASM 583


>emb|CBI23009.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  570 bits (1468), Expect(2) = 0.0
 Identities = 296/341 (86%), Positives = 316/341 (92%), Gaps = 8/341 (2%)
 Frame = +3

Query: 876  GSG---NSKDGSWGGANMGNDFPTPKEICQGLDKFVIGQERAKKVLSVAVYNHYKRIYFE 1046
            GSG   NSKD SWGG+N+G++FPTPKEIC+GLDKFVIGQERAKKVLSVAVYNHYKRIY +
Sbjct: 142  GSGFGSNSKDESWGGSNLGHNFPTPKEICRGLDKFVIGQERAKKVLSVAVYNHYKRIYHQ 201

Query: 1047 SQPKCAEGSTNGE-----DNDSVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADA 1211
            S  K     T+ +     DNDSVELEKSN+LLMGPTGSGKTLLAKTLARFVNVPFVIADA
Sbjct: 202  SLQKWPAEDTSDDKAEATDNDSVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADA 261

Query: 1212 TTLTQAGYVGEDVESILYKLLMVADYNVEAAQQGIVYIDEVDKITKKAESLNISRDVSGE 1391
            TTLTQA YVGEDVESILYKLLMVADYNV AAQQGIVYIDEVDKITKKAESLN+SRDVSGE
Sbjct: 262  TTLTQARYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNLSRDVSGE 321

Query: 1392 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDS 1571
            GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDS
Sbjct: 322  GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDS 381

Query: 1572 SIGFGAPVRANMRTGGLTNAAITSSLLETVESSDLIAYGLIPEFVGRFPVLVSLSALSED 1751
            SIGFGAPVRANMRTGG T+AA+ SSLLETVESSDLI+YGLIPEFVGRFP+LVSLSAL+E+
Sbjct: 382  SIGFGAPVRANMRTGGPTDAAVASSLLETVESSDLISYGLIPEFVGRFPILVSLSALTEN 441

Query: 1752 QLVQVLIEPKNALGKQYRKMFQMNDVKLHFTEVALRLIARK 1874
            QLV+VL EPKNALGKQY+KMFQMN VKLHFT+ ALRLI+RK
Sbjct: 442  QLVEVLTEPKNALGKQYKKMFQMNGVKLHFTKNALRLISRK 482



 Score =  122 bits (307), Expect(2) = 0.0
 Identities = 68/101 (67%), Positives = 80/101 (79%), Gaps = 1/101 (0%)
 Frame = +1

Query: 1972 MARSTGARGLRSLLENILMDAMYEIPDLETGKDKIDAVVVDEEAVGSMERSGRGAKILYG 2151
            M+++TGARGLRS+LENILM+AMYEIPD+ TG D IDAVVVD+EAVGS +  G GAKILYG
Sbjct: 484  MSKNTGARGLRSILENILMNAMYEIPDVRTGNDIIDAVVVDDEAVGS-DGHGFGAKILYG 542

Query: 2152 DGAFELYLSQQKSKEFETREEG-SERMPDAEPELPSIVVSM 2271
             GA + YLSQ K KE ET  EG S+   +AE E+PSIV SM
Sbjct: 543  KGALDCYLSQHKLKETETPMEGSSDGEAEAEAEIPSIVASM 583


>ref|XP_002516670.1| ATP-dependent clp protease ATP-binding subunit clpx, putative
            [Ricinus communis] gi|223544165|gb|EEF45689.1|
            ATP-dependent clp protease ATP-binding subunit clpx,
            putative [Ricinus communis]
          Length = 565

 Score =  567 bits (1460), Expect(2) = 0.0
 Identities = 290/335 (86%), Positives = 310/335 (92%), Gaps = 5/335 (1%)
 Frame = +3

Query: 885  NSKDGSWGGANMGNDFPTPKEICQGLDKFVIGQERAKKVLSVAVYNHYKRIYFESQPKCA 1064
            NSKDG WGG+++GN+FPTPKEIC+GLDKFVIGQ+RAKKVLSVAVYNHYKRIY +S  K +
Sbjct: 131  NSKDGCWGGSDLGNNFPTPKEICRGLDKFVIGQDRAKKVLSVAVYNHYKRIYHDSIQKWS 190

Query: 1065 EGSTNGE-----DNDSVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQA 1229
             G +        D D VELEKSN+LLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQA
Sbjct: 191  AGDSGNNKAEAMDEDGVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQA 250

Query: 1230 GYVGEDVESILYKLLMVADYNVEAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 1409
            GYVGEDVESILYKLLM ADYNV AAQQGIVYIDEVDKITKKAES+NISRDVSGEGVQQAL
Sbjct: 251  GYVGEDVESILYKLLMAADYNVAAAQQGIVYIDEVDKITKKAESVNISRDVSGEGVQQAL 310

Query: 1410 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFGA 1589
            LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFGA
Sbjct: 311  LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFGA 370

Query: 1590 PVRANMRTGGLTNAAITSSLLETVESSDLIAYGLIPEFVGRFPVLVSLSALSEDQLVQVL 1769
            PVRANMR G +T+AA+TSSLLETVES DLI+YGLIPEFVGRFPVLVSLSAL+E+QLVQVL
Sbjct: 371  PVRANMRMGSVTSAAVTSSLLETVESGDLISYGLIPEFVGRFPVLVSLSALTENQLVQVL 430

Query: 1770 IEPKNALGKQYRKMFQMNDVKLHFTEVALRLIARK 1874
             EPKNALGKQY+KMFQMN V+LHFTE ALRLIA+K
Sbjct: 431  TEPKNALGKQYKKMFQMNGVRLHFTENALRLIAKK 465



 Score =  118 bits (295), Expect(2) = 0.0
 Identities = 61/100 (61%), Positives = 78/100 (78%)
 Frame = +1

Query: 1972 MARSTGARGLRSLLENILMDAMYEIPDLETGKDKIDAVVVDEEAVGSMERSGRGAKILYG 2151
            + ++TGARGLR++LENILMDAMYEIPD++TG+D IDAVVVDEEAVG+ E  G G +ILYG
Sbjct: 467  ITKNTGARGLRAILENILMDAMYEIPDVKTGEDIIDAVVVDEEAVGT-EGCGTGGRILYG 525

Query: 2152 DGAFELYLSQQKSKEFETREEGSERMPDAEPELPSIVVSM 2271
             GA + YL++ K K+ E   +GS+  P+ E EL SIV SM
Sbjct: 526  KGALDRYLAENKLKDSERTVDGSDGDPEVETELSSIVASM 565


>ref|XP_002864237.1| hypothetical protein ARALYDRAFT_918413 [Arabidopsis lyrata subsp.
            lyrata] gi|297310072|gb|EFH40496.1| hypothetical protein
            ARALYDRAFT_918413 [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  568 bits (1465), Expect(2) = 0.0
 Identities = 291/339 (85%), Positives = 314/339 (92%), Gaps = 6/339 (1%)
 Frame = +3

Query: 876  GSG-NSKDGSWGGANMGNDFPTPKEICQGLDKFVIGQERAKKVLSVAVYNHYKRIYFESQ 1052
            G+G NSK+  WGG+N+G+DFPTPKEIC+GL+KFVIGQERAKKVLSVAVYNHYKRIY ES 
Sbjct: 132  GTGSNSKEDCWGGSNLGSDFPTPKEICKGLNKFVIGQERAKKVLSVAVYNHYKRIYHESS 191

Query: 1053 PKCAEGSTNGE-----DNDSVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATT 1217
             K + G T+       D+D VELEKSN+LLMGPTGSGKTLLAKTLARFVNVPFVIADATT
Sbjct: 192  QKRSAGETDSTAVKPADDDMVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATT 251

Query: 1218 LTQAGYVGEDVESILYKLLMVADYNVEAAQQGIVYIDEVDKITKKAESLNISRDVSGEGV 1397
            LTQAGYVGEDVESILYKLL VADYNV AAQQGIVYIDEVDKITKKAESLNISRDVSGEGV
Sbjct: 252  LTQAGYVGEDVESILYKLLTVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGV 311

Query: 1398 QQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSI 1577
            QQALLKMLEGT+VNVPEKGARKHPRGDNIQIDTKDILFICGGAF+D+EKTISERR DSSI
Sbjct: 312  QQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRHDSSI 371

Query: 1578 GFGAPVRANMRTGGLTNAAITSSLLETVESSDLIAYGLIPEFVGRFPVLVSLSALSEDQL 1757
            GFGAPVRANMR GG+TNAA+ S+L+ETVESSDLIAYGLIPEFVGRFPVLVSLSAL+E+QL
Sbjct: 372  GFGAPVRANMRAGGVTNAAVASNLMETVESSDLIAYGLIPEFVGRFPVLVSLSALTENQL 431

Query: 1758 VQVLIEPKNALGKQYRKMFQMNDVKLHFTEVALRLIARK 1874
            +QVL EPKNALGKQY+KM+QMN VKLHFTE ALRLIARK
Sbjct: 432  MQVLTEPKNALGKQYKKMYQMNSVKLHFTESALRLIARK 470



 Score =  112 bits (279), Expect(2) = 0.0
 Identities = 60/101 (59%), Positives = 75/101 (74%), Gaps = 1/101 (0%)
 Frame = +1

Query: 1972 MARSTGARGLRSLLENILMDAMYEIPDLETGKDKIDAVVVDEEAVGSMERSGRGAKILYG 2151
            + ++TGARGLRSLLE+ILMD+MYEIPD  TG D I+AVVVDEEAV    R G GAKIL G
Sbjct: 472  ITKNTGARGLRSLLESILMDSMYEIPDESTGSDMIEAVVVDEEAVEGEGRRGSGAKILRG 531

Query: 2152 DGAFELYLSQQKSKEF-ETREEGSERMPDAEPELPSIVVSM 2271
             GA   YLS+ KSK+  +T ++GS+   + E E+PS+V SM
Sbjct: 532  KGALGRYLSETKSKDSPQTTKDGSDGETEVEAEIPSVVASM 572