BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00009058
         (1518 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277910.2| PREDICTED: RNA polymerase II-associated prot...   383   e-104
emb|CBI39598.3| unnamed protein product [Vitis vinifera]              383   e-104
ref|XP_002330255.1| predicted protein [Populus trichocarpa] gi|2...   375   e-101
ref|XP_002318949.1| predicted protein [Populus trichocarpa] gi|2...   366   8e-99
ref|XP_004144746.1| PREDICTED: RNA polymerase II-associated prot...   354   4e-95

>ref|XP_002277910.2| PREDICTED: RNA polymerase II-associated protein 3-like [Vitis
            vinifera]
          Length = 474

 Score =  383 bits (984), Expect = e-104
 Identities = 206/389 (52%), Positives = 265/389 (68%), Gaps = 31/389 (7%)
 Frame = -2

Query: 1421 HVGTSSLQTSYQDLLTQESSPTAATEKDLGNECFKQKKYNEAIDCYSRSIALSPTAVAFA 1242
            H   S + +S+   +T+ES P AA+EK+LGNE FKQ+K+ EAIDCYSRSIAL PTAVA+A
Sbjct: 86   HDAISRISSSF---MTEESLPDAASEKELGNEYFKQRKFKEAIDCYSRSIALLPTAVAYA 142

Query: 1241 NRAMAYLKIKRFEEAENDCTEALNLDDRYTKAYSRRATARKELGKLKASLEDSEFALRLE 1062
            NRAMAY+KIKRF EAE+DC EALNLDDRY KAYSRRATARKELGK K + ED+EFALRLE
Sbjct: 143  NRAMAYIKIKRFREAEDDCMEALNLDDRYIKAYSRRATARKELGKFKEATEDAEFALRLE 202

Query: 1061 PQNQELKKQHAEAKAMYDKELLKKASETMKSSTPGAQRV-------IGNENRIKEVVGRS 903
            PQNQE+KKQ+AEAK++Y+KE+L+KAS  +KSS  G Q+V         +   ++ +   S
Sbjct: 203  PQNQEIKKQYAEAKSLYEKEILQKASGALKSSVQGLQKVGKSVVEVNADTQGVRSISSSS 262

Query: 902  ANAGNRSL------------------------REDSNGSQEGATLKPIADASKNVHGMKK 795
              AG  ++                        R   NG  E A      +   + H   +
Sbjct: 263  QGAGEAAIQDRFMVPANTSTSMEETENKGTGNRSKENGYLENAVQNSGLEDVMSNHKTGQ 322

Query: 794  QEVRMSVQELXXXXXXXXXXXAGKSITSPKSAYQFEISWRGVSGDVALQARLLKAISPPS 615
            +E++ S+QEL           A K+IT+P SAYQFE+SWRG+ GD ALQA  LKAISP +
Sbjct: 323  REMKSSLQELASRAASRAMVEAAKNITAPNSAYQFEVSWRGLLGDHALQASYLKAISPNA 382

Query: 614  LPHLLKNSLSAALLIDIIKCIATFFREETELAVRYLDNLAKVPRFDLLIMCLSATDKSDL 435
            LP + KN+LSA +LIDIIKCIATFF  E +LAV++LDNL K+ RFD++IMCLS+TDK+DL
Sbjct: 383  LPQIFKNALSAPILIDIIKCIATFFVTEMDLAVKFLDNLTKISRFDMIIMCLSSTDKTDL 442

Query: 434  HRMWEENFLSSALPVEFVETLGKLHMKYC 348
             ++W+E F + A P  + +TLGKL  +YC
Sbjct: 443  LKIWDEVFCNKATPSGYADTLGKLRPRYC 471


>emb|CBI39598.3| unnamed protein product [Vitis vinifera]
          Length = 1097

 Score =  383 bits (984), Expect = e-104
 Identities = 206/389 (52%), Positives = 265/389 (68%), Gaps = 31/389 (7%)
 Frame = -2

Query: 1421 HVGTSSLQTSYQDLLTQESSPTAATEKDLGNECFKQKKYNEAIDCYSRSIALSPTAVAFA 1242
            H   S + +S+   +T+ES P AA+EK+LGNE FKQ+K+ EAIDCYSRSIAL PTAVA+A
Sbjct: 709  HDAISRISSSF---MTEESLPDAASEKELGNEYFKQRKFKEAIDCYSRSIALLPTAVAYA 765

Query: 1241 NRAMAYLKIKRFEEAENDCTEALNLDDRYTKAYSRRATARKELGKLKASLEDSEFALRLE 1062
            NRAMAY+KIKRF EAE+DC EALNLDDRY KAYSRRATARKELGK K + ED+EFALRLE
Sbjct: 766  NRAMAYIKIKRFREAEDDCMEALNLDDRYIKAYSRRATARKELGKFKEATEDAEFALRLE 825

Query: 1061 PQNQELKKQHAEAKAMYDKELLKKASETMKSSTPGAQRV-------IGNENRIKEVVGRS 903
            PQNQE+KKQ+AEAK++Y+KE+L+KAS  +KSS  G Q+V         +   ++ +   S
Sbjct: 826  PQNQEIKKQYAEAKSLYEKEILQKASGALKSSVQGLQKVGKSVVEVNADTQGVRSISSSS 885

Query: 902  ANAGNRSL------------------------REDSNGSQEGATLKPIADASKNVHGMKK 795
              AG  ++                        R   NG  E A      +   + H   +
Sbjct: 886  QGAGEAAIQDRFMVPANTSTSMEETENKGTGNRSKENGYLENAVQNSGLEDVMSNHKTGQ 945

Query: 794  QEVRMSVQELXXXXXXXXXXXAGKSITSPKSAYQFEISWRGVSGDVALQARLLKAISPPS 615
            +E++ S+QEL           A K+IT+P SAYQFE+SWRG+ GD ALQA  LKAISP +
Sbjct: 946  REMKSSLQELASRAASRAMVEAAKNITAPNSAYQFEVSWRGLLGDHALQASYLKAISPNA 1005

Query: 614  LPHLLKNSLSAALLIDIIKCIATFFREETELAVRYLDNLAKVPRFDLLIMCLSATDKSDL 435
            LP + KN+LSA +LIDIIKCIATFF  E +LAV++LDNL K+ RFD++IMCLS+TDK+DL
Sbjct: 1006 LPQIFKNALSAPILIDIIKCIATFFVTEMDLAVKFLDNLTKISRFDMIIMCLSSTDKTDL 1065

Query: 434  HRMWEENFLSSALPVEFVETLGKLHMKYC 348
             ++W+E F + A P  + +TLGKL  +YC
Sbjct: 1066 LKIWDEVFCNKATPSGYADTLGKLRPRYC 1094


>ref|XP_002330255.1| predicted protein [Populus trichocarpa] gi|222871711|gb|EEF08842.1|
            predicted protein [Populus trichocarpa]
          Length = 434

 Score =  375 bits (963), Expect = e-101
 Identities = 216/429 (50%), Positives = 271/429 (63%), Gaps = 43/429 (10%)
 Frame = -2

Query: 1502 DFQGLINNLQDWXXXXXXXXXXXXXXK-------HVGTSSLQTSYQD------------- 1383
            DFQG +N+LQDW              +         G S  +TS  D             
Sbjct: 15   DFQGFLNDLQDWELLKDTDKKMKKKSRASDVKIGEDGRSKGKTSAADSSRSGSGQYEYSR 74

Query: 1382 -----------LLTQESSPTAATEKDLGNECFKQKKYNEAIDCYSRSIALSPTAVAFANR 1236
                         T E +  A TEK+LGNE FKQKK+NEAI+CYSRSIALSPTAVA+ANR
Sbjct: 75   NFGAINRLSSSFTTDEITVDATTEKELGNEYFKQKKFNEAIECYSRSIALSPTAVAYANR 134

Query: 1235 AMAYLKIKR----FEEAENDCTEALNLDDRYTKAYSRRATARKELGKLKASLEDSEFALR 1068
            AMAYLKIKR    F EAE+DCTEALNLDDRY KAYSRRATARKELGKLK S+EDSEFAL+
Sbjct: 135  AMAYLKIKRQFFLFREAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALK 194

Query: 1067 LEPQNQELKKQHAEAKAMYDK-------ELLKKASETMKSSTPGAQRVIGNENRIKEVVG 909
            LEP NQE+KKQ+AE K++Y+K       E+L+KAS T++SS  G Q+            G
Sbjct: 195  LEPNNQEIKKQYAEVKSLYEKASDYLMLEILQKASGTLRSSLQGTQQG-----------G 243

Query: 908  RS-ANAGNRSLREDSNGSQEGATLKPIADASKNVHGMKKQEVRMSVQELXXXXXXXXXXX 732
            RS A+    ++   S  +Q+        D +K  +  ++QE++ SV EL           
Sbjct: 244  RSEASVNGHAVHPVSIATQKTGVSASKKDNTKKNNRTRRQELKTSVIELASQAASRAMAE 303

Query: 731  AGKSITSPKSAYQFEISWRGVSGDVALQARLLKAISPPSLPHLLKNSLSAALLIDIIKCI 552
            A K+IT P SAYQFE+SW+G SGD ALQA LLK  SP +LP + KN+LS  +LIDIIKC+
Sbjct: 304  AAKNITPPNSAYQFEVSWQGFSGDRALQAHLLKVTSPSALPQIFKNALSVPILIDIIKCV 363

Query: 551  ATFFREETELAVRYLDNLAKVPRFDLLIMCLSATDKSDLHRMWEENFLSSALPVEFVETL 372
            A+FF ++ + AV+YL+NL KVPRFD+LIMCLS+TD SDL +MW+  F S++ P+E+ E L
Sbjct: 364  ASFFIDDMDFAVKYLENLTKVPRFDMLIMCLSSTDTSDLLKMWDGVFCSASTPIEYAEIL 423

Query: 371  GKLHMKYCP 345
              L  KYCP
Sbjct: 424  DNLRSKYCP 432


>ref|XP_002318949.1| predicted protein [Populus trichocarpa] gi|222857325|gb|EEE94872.1|
            predicted protein [Populus trichocarpa]
          Length = 471

 Score =  366 bits (940), Expect = 8e-99
 Identities = 213/461 (46%), Positives = 277/461 (60%), Gaps = 75/461 (16%)
 Frame = -2

Query: 1502 DFQGLINNLQDWXXXXXXXXXXXXXXKH----VGTSSLQTSYQ-------------DLLT 1374
            DFQG +N+LQDW                    V  SS    Y                  
Sbjct: 15   DFQGFLNDLQDWELLKDTDKKMKKKSTGKTSAVDFSSSSGMYDHARNFDAINRLSNSFAI 74

Query: 1373 QESSPTAATEKDLGNECFKQKKYNEAIDCYSRSIALSPTAVAFANRAMAYLKIKRFEEAE 1194
             ES+  A TEK+LGNE FKQKKY EAI+CYSRSIALSPTAVA+ANRAMAYLKIKR  +AE
Sbjct: 75   DESTVDATTEKELGNEYFKQKKYKEAIECYSRSIALSPTAVAYANRAMAYLKIKR--QAE 132

Query: 1193 NDCTEALNLDDRYTKAYSRRATARKELGKLKASLEDSEFALRLEPQNQELKKQHAEAKAM 1014
            +DCTEALNLDDRY KAYSRRAT RKELGKLK S+EDSEFAL+LEP NQE+KKQ+AE K++
Sbjct: 133  DDCTEALNLDDRYIKAYSRRATTRKELGKLKESIEDSEFALKLEPNNQEIKKQYAEVKSL 192

Query: 1013 YDKE------------------LLKKASETMKSSTPGAQR-------------------- 948
            Y+K                    + KASE+++SS  GAQ+                    
Sbjct: 193  YEKASDSTICCYSGCYISLLQFFVTKASESLRSSLQGAQKGGRSEASVNGHAVHPVSNVT 252

Query: 947  --------------------VIGNENRIKEVVGRSANAGNRSLREDSNGSQEGATLKPIA 828
                                V+     ++E+  +S  AG+RS  +  N S+  A   P +
Sbjct: 253  QRTGASASQKDKAKENDGDGVVKKSVYVEEIKNKSTGAGSRSDGQLGNDSRANAI--PSS 310

Query: 827  DASKNVHGMKKQEVRMSVQELXXXXXXXXXXXAGKSITSPKSAYQFEISWRGVSGDVALQ 648
            +A +++    +QE++ SV+EL           A K+IT P SAYQFE+SWRG SGD ALQ
Sbjct: 311  NA-ESIQVTGRQELKASVKELASQAASRAMAEAAKNITPPNSAYQFEVSWRGFSGDRALQ 369

Query: 647  ARLLKAISPPSLPHLLKNSLSAALLIDIIKCIATFFREETELAVRYLDNLAKVPRFDLLI 468
            A LLK ++P +LP + KN+LS  +LIDIIKC+++FF ++ +LAV+YL+NL +VPRFD+LI
Sbjct: 370  AHLLKVVTPSALPQIFKNALSVTILIDIIKCVSSFFIDDMDLAVKYLENLTEVPRFDILI 429

Query: 467  MCLSATDKSDLHRMWEENFLSSALPVEFVETLGKLHMKYCP 345
            MCL +TDK+DL +MW+E F S A P+++ E L K+  +YCP
Sbjct: 430  MCLPSTDKADLLKMWDEVFCSEATPIKYAEILDKMRSRYCP 470


>ref|XP_004144746.1| PREDICTED: RNA polymerase II-associated protein 3-like [Cucumis
            sativus] gi|449517788|ref|XP_004165926.1| PREDICTED: RNA
            polymerase II-associated protein 3-like [Cucumis sativus]
          Length = 458

 Score =  354 bits (908), Expect = 4e-95
 Identities = 206/443 (46%), Positives = 272/443 (61%), Gaps = 59/443 (13%)
 Frame = -2

Query: 1502 DFQGLINNLQDWXXXXXXXXXXXXXXK----------------------HVGTSSLQTSY 1389
            DFQG +N+LQDW                                     +   + L  ++
Sbjct: 15   DFQGFLNDLQDWEVSFKGKDKKLKPQAIGKEKEDRRQTEKASAADYMKQYDAVNRLSRNF 74

Query: 1388 QDLLTQESSPTAATEKDLGNECFKQKKYNEAIDCYSRSIALSPTAVAFANRAMAYLKIKR 1209
            Q   T+ S   AA+EK+ GNE FKQKK+ EAIDCYSRSIALSPTAVAFANRAMAYLKI+R
Sbjct: 75   Q---TEGSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFANRAMAYLKIRR 131

Query: 1208 FEEAENDCTEALNLDDRYTKAYSRRATARKELGKLKASLEDSEFALRLEPQNQELKKQHA 1029
            F+EAE+DCTEALNLDDRY KAYSRRATARKELGK K +LED+EFA RLEP NQE+KKQHA
Sbjct: 132  FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQEIKKQHA 191

Query: 1028 EAKAMYDKELLKKASETMKSSTPGAQRVIGNEN--RIKEVVGRSA--------------- 900
            + +A   K +L+KAS   +SST   + +  +++  +I+++   S+               
Sbjct: 192  DLRAFVGKAILEKASGASRSSTKNKKTLKKSDSDAKIQDIPPVSSSTSRTGLLAARERVE 251

Query: 899  -NAGNRSLR-----EDSNGSQEGA--TLKPIA------------DASKNVHGMKKQEVRM 780
             N G  +++     E+S  +  GA  T K +A             A +  H  +KQE++ 
Sbjct: 252  ENGGGNAVKTSARLEESEDTSSGAEITSKKVATNGFHKDSSSYLSALERDHLPRKQELKA 311

Query: 779  SVQELXXXXXXXXXXXAGKSITSPKSAYQFEISWRGVSGDVALQARLLKAISPPSLPHLL 600
            SV EL           A K+I +P +AYQFE+SWRG SGD ALQARLLK ISP  LP + 
Sbjct: 312  SVYELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGFSGDQALQARLLKTISPAKLPQIF 371

Query: 599  KNSLSAALLIDIIKCIATFFREETELAVRYLDNLAKVPRFDLLIMCLSATDKSDLHRMWE 420
            K++L+A +LIDI+KC+ATFF EE  LA+ +L+NL  VPRF +L+MCLS+++K DL ++W+
Sbjct: 372  KDALTAPILIDIVKCVATFFIEEPALAISFLENLVNVPRFSILMMCLSSSEKFDLLKIWD 431

Query: 419  ENFLSSALPVEFVETLGKLHMKY 351
            E F   A+P+E+ E L  L  KY
Sbjct: 432  EVFCDEAVPIEYAEMLDSLRSKY 454