BLASTX nr result
ID: Coptis23_contig00008996
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00008996
(1633 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002331320.1| f-box family protein [Populus trichocarpa] g... 105 5e-20
emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera] 99 3e-18
ref|XP_002331319.1| f-box family protein [Populus trichocarpa] g... 98 6e-18
ref|NP_567414.1| putative F-box/LRR-repeat protein [Arabidopsis ... 97 1e-17
ref|XP_002331321.1| predicted protein [Populus trichocarpa] gi|2... 96 4e-17
>ref|XP_002331320.1| f-box family protein [Populus trichocarpa]
gi|222873903|gb|EEF11034.1| f-box family protein [Populus
trichocarpa]
Length = 453
Score = 105 bits (261), Expect = 5e-20
Identities = 103/348 (29%), Positives = 159/348 (45%), Gaps = 30/348 (8%)
Frame = +2
Query: 110 SDEDIISSLPEQILHHILSYLDMKEVMLTSLLSTKWRNVWRSVPNLIFNECFWKDPVRKV 289
++ED IS+LP +LHHILS++D +V+ T +LS +W NVW+S P L FN + +
Sbjct: 32 NNEDRISTLPNVLLHHILSFVDAVQVVQTCVLSKRWMNVWKSHPYLDFNFETFSSLINSD 91
Query: 290 LV---LSKFIYFVDTVLLLRGGSNINKLSITSSKYNNLNQIQRLITYAVMRNAKEIHM-- 454
++ F F+ VL+ R KLS+ + + + ++ LI YAV + +EI +
Sbjct: 92 YYDDDMNNFTDFIYHVLVRRNNVKAFKLSLDTRRDCQYSVVESLIYYAVKHHVEEISINT 151
Query: 455 ----VGLDIYRAKPDLLSL------------------LARVNTLHLVSVRISSFDTQEWL 568
V + + R D SL L + TLHL + +FD + +
Sbjct: 152 AHWDVPIVLPRCFFDCESLRSLKLKVDGGLALPKSLGLQSLKTLHLGGAQ--NFDGK--I 207
Query: 569 HLKSQSLENLIIED--CRGFRCLGIYTPQLKYLKVENSREEYNPSGL-IEIDAPKLTSLV 739
+LENL IED I+ LK L++ N R G + + APKLTS
Sbjct: 208 FSSCPNLENLTIEDICLNVIENFNIHALSLKSLEILNWRYNRIKQGCKVMLVAPKLTSFK 267
Query: 740 WKGYMYKDYIFSSPSSLVTVEVDTKINSVDEHEHLNTXXXXXXXXXXXXXAIPSPDVVFG 919
+ G +F S +L +++ +N V + H + + G
Sbjct: 268 FDG---NTPLFWSDVNLTSLD---DVNVVLQRYHHSHNYPFYVVEDEYISEEDETEQGLG 321
Query: 920 KCLRNILKELTNAKSLILSAHGFQTFSEVPDEIDSLPSSFHNLKFLKL 1063
L +L + +AKSL LS + + SEVP +D PS F NLK+LKL
Sbjct: 322 LNLIKMLHQFCSAKSLTLSMNIIEILSEVPAALDKHPSPFSNLKYLKL 369
>emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera]
Length = 607
Score = 99.0 bits (245), Expect = 3e-18
Identities = 123/468 (26%), Positives = 195/468 (41%), Gaps = 35/468 (7%)
Frame = +2
Query: 119 DIISSLPEQILHHILSYLDMKEVMLTSLLSTKWRNVWRSVPNLIFNECFWKDPVRKVLVL 298
DIIS+LP+++L HILS+L K + TS+LS +WR +W SVP L F++ W +P V +
Sbjct: 10 DIISNLPDELLCHILSFLPTKFAVGTSILSKRWRYLWASVPILDFDDELWLNPSTLVELE 69
Query: 299 SKFIY---FVDTVLLLRGGSNINKLSITSSKYNNLNQIQRLITYAVMRNAKEIHMVGLDI 469
+ I FVD VL S I K + + NNL+ + I A+ R +E+ + L
Sbjct: 70 ERIIMFQNFVDGVLRHSEVSCIKKFRL-GYRDNNLDSVYSWICIALERRVQELDLHLLID 128
Query: 470 YRAK-PDLLSL----------------------LARVNTLHLVSVRISSFDTQEWLHLKS 580
+R + P + + L + LHL SV S D+ + L
Sbjct: 129 WRVELPPMFFICKTLVVVKLSCALFLDIPTTVWLPSLKALHLKSVEYSDDDSIQKLLSGC 188
Query: 581 QSLENLII--EDCRGFRCLGIYTPQLKYLKV-------ENSREEYNPSGLIEIDAPKLTS 733
LE L+I E+ + + P LK L++ + E+ + + +DAP L
Sbjct: 189 PVLEELVIEREERDNQWVVNVSNPSLKILRIFFFTDGFAHPYEQEDQDYKVVVDAPNLEY 248
Query: 734 LVWKGYMYKDYIFSSPSSLVTVEVDTKINSVDEHEHLNTXXXXXXXXXXXXXAIPSPDVV 913
L Y+ KDY SLV +D + +S + E + + +
Sbjct: 249 LSITDYLSKDYFVKDLPSLVKAFIDVEQDSEEFEESPH-----------------NGGIS 291
Query: 914 FGKCLRNILKELTNAKSLILSAHGFQTFSEVPDEIDSLPSSFHNLKFLKLTDLDNSGNIC 1093
+ + +L ++N K L L+ + S + LP +FHN+ L+ + N
Sbjct: 292 YHGPIYELLGRISNVKCLSLTGVTLDSLSGTIGDY-KLP-TFHNMTRLEFLFI-GGFNWD 348
Query: 1094 ALAKLLKSFPCLETLVLERTQAISTTTEEGGDWGXXXXXXXXXXHLKSIEIQDLEGCXXX 1273
L L S P LE LV+E E G HLK IEI+ + G
Sbjct: 349 FLPNFLHSSPNLEALVIETGYTNELIPE--GWLMPLQVPACLVLHLKEIEIRRIVGEDYE 406
Query: 1274 XXXXXXXXXXAMVLESITIKVREALSEYKEKELGEFAKKIQSMSKASQ 1417
A VL+ +TI E+ Y ++E KK+ + + S+
Sbjct: 407 LEAVEYLLKNAEVLQQMTIDCHES---YMDQEFC-VCKKLLGLPRGSR 450
>ref|XP_002331319.1| f-box family protein [Populus trichocarpa]
gi|222873902|gb|EEF11033.1| f-box family protein [Populus
trichocarpa]
Length = 453
Score = 98.2 bits (243), Expect = 6e-18
Identities = 101/348 (29%), Positives = 156/348 (44%), Gaps = 30/348 (8%)
Frame = +2
Query: 110 SDEDIISSLPEQILHHILSYLDMKEVMLTSLLSTKWRNVWRSVPNLIFNECFWKDPVRKV 289
++ED IS+LP +LHHILS++D +V+ T +LS +W NVW+S P L FN + +
Sbjct: 32 NNEDRISTLPNVLLHHILSFVDAVQVVQTCVLSKRWMNVWKSHPYLDFNFETFSSLINSD 91
Query: 290 LV---LSKFIYFVDTVLLLRGGSNINKLSITSSKYNNLNQIQRLITYAVMRNAKEIHM-- 454
++ F F+ VL+ R K+S+ + + ++ LI YAV + +EI +
Sbjct: 92 YYDDEVNNFTDFIYHVLVRRHNLKAVKISLDILRDTRCSLVESLIYYAVKHHVEEISVNT 151
Query: 455 ----VGLDIYRAKPDLLSL------------------LARVNTLHLVSVRISSFDTQEWL 568
+ + + R D SL L + TLHL R +FD + +
Sbjct: 152 AHWDMPIVLPRCFFDCESLRSLKLKVDGGIALPKSLGLQSLKTLHLGGAR--NFDGK--I 207
Query: 569 HLKSQSLENLIIED--CRGFRCLGIYTPQLKYLKVENSREEYNPSGL-IEIDAPKLTSLV 739
+LENL IED I+ LK L++ N R G + + APKLTS
Sbjct: 208 FSTCPNLENLKIEDIYLNTIENFNIHALNLKSLEILNWRYGRIMRGCKVMLFAPKLTSFK 267
Query: 740 WKGYMYKDYIFSSPSSLVTVEVDTKINSVDEHEHLNTXXXXXXXXXXXXXAIPSPDVVFG 919
+ G +F S +L +++ + +H H + G
Sbjct: 268 FYG---NTPLFWSEVNLTSLDDVNVVLQRYQHSH---NYPFYVVEDEYISEEDETEQGLG 321
Query: 920 KCLRNILKELTNAKSLILSAHGFQTFSEVPDEIDSLPSSFHNLKFLKL 1063
L +L + +AKSL LS + + SEVP +D PS F NLK+LKL
Sbjct: 322 LNLIKMLHQFCSAKSLTLSMNIIEILSEVPAALDKHPSPFSNLKYLKL 369
>ref|NP_567414.1| putative F-box/LRR-repeat protein [Arabidopsis thaliana]
gi|75318094|sp|O23257.1|FBL72_ARATH RecName:
Full=Putative F-box/LRR-repeat protein At4g13960
gi|2244752|emb|CAB10175.1| hypothetical protein
[Arabidopsis thaliana] gi|7268100|emb|CAB78438.1|
hypothetical protein [Arabidopsis thaliana]
gi|332657951|gb|AEE83351.1| putative F-box/LRR-repeat
protein [Arabidopsis thaliana]
Length = 434
Score = 97.1 bits (240), Expect = 1e-17
Identities = 104/360 (28%), Positives = 161/360 (44%), Gaps = 17/360 (4%)
Frame = +2
Query: 119 DIISSLPEQILHHILSYLDMKEVMLTSLLSTKWRNVWRSVPNLIFNECFWKDPVR----K 286
D +SSLP+++L+HILS+L KE LTS+LS +WRN++ VPNL ++ + P +
Sbjct: 2 DHVSSLPDEVLYHILSFLTTKEAALTSILSKRWRNLFTFVPNLDIDDSVFLHPQEGKEDR 61
Query: 287 VLVLSKFIYFVDTVLLLRGGSNINKLSITSSKYNNLNQIQRLITYAVMRNAKEIHMVGLD 466
+ F+ FVD VL L+G S I KLS+ + +++ I+ A+ R E+
Sbjct: 62 YEIQKSFMKFVDRVLALQGNSPIKKLSLKLRTGFDSHRVDGWISNALARGVTEL------ 115
Query: 467 IYRAKPDLLSLLARVNTLHLVSVRISSFDTQEWL---HLKSQSLENLIIEDCR------- 616
DLL +L V TL L SVR+ +WL + L+ L++ R
Sbjct: 116 ------DLLIILNLV-TLKLNSVRV------DWLAAGDIFLPMLKTLVLHSVRLCVDNVN 162
Query: 617 -GFRCLGIYTPQLKYLKVENSREEYNPS-GLIEIDAPKLTSLVWKGYMYKDYIFSSPSSL 790
G + + + LK L V YN G +D P L + Y+ DY +L
Sbjct: 163 WGGKDVNVSNASLKILTV-----NYNICLGTFSVDTPSLVYFCFTEYVAIDYPVVIMQNL 217
Query: 791 VTVEVDTKINSVDEHEHLNTXXXXXXXXXXXXXAIPSPDVVFGKC-LRNILKELTNAKSL 967
+ + D+ E DVV + ++K + N + +
Sbjct: 218 FEARISLLVTQ-DQIERARAPNIDWV----------EDDVVLRLVNMEKLIKGIRNVQYM 266
Query: 968 ILSAHGFQTFSEVPDEIDSLPSSFHNLKFLKLTDLDNSGNICALAKLLKSFPCLETLVLE 1147
LS + + S +S+P F+NLK L L + G A+ LL++ P LETLVLE
Sbjct: 267 YLSPNTLEVLSLC---CESMP-VFNNLKSLTLKSHKSRG-WQAMPVLLRNCPHLETLVLE 321
>ref|XP_002331321.1| predicted protein [Populus trichocarpa] gi|222873904|gb|EEF11035.1|
predicted protein [Populus trichocarpa]
Length = 378
Score = 95.5 bits (236), Expect = 4e-17
Identities = 102/366 (27%), Positives = 161/366 (43%), Gaps = 31/366 (8%)
Frame = +2
Query: 59 MEGSIKMLTSCNKVMRMSDEDIISSLPEQILHHILSYLDMKEVMLTSLLSTKWRNVWRSV 238
ME + +S N ++ED IS+LP +LH ILS++D +V+ T +LS +W NVW+S
Sbjct: 1 MESRTRKRSSLN-----NNEDRISTLPNVLLHRILSFVDAVQVVQTCVLSKRWMNVWKSH 55
Query: 239 PNLIFNECFWKDPVRKVLV---LSKFIYFVDTVLLLRGGSNINKLSITSSKYNNLNQIQR 409
P L FN + + + F F++ VL+ R K+S+ + + ++
Sbjct: 56 PYLDFNFETFSSLINSDYYEDEMVNFTDFINQVLVRRNNFKAIKISLDLCGHTRYSLVES 115
Query: 410 LITYAVMRNAKEIHM-------------------------VGLDIYRAKPDLLSLLARVN 514
LI YAV +A+EI + + +D A P L L +
Sbjct: 116 LIYYAVKHHAEEICIDTACRDVPIVLPRCFFNCESLRSLKLRIDGGIALPKSLG-LPSLK 174
Query: 515 TLHLVSVRISSFDTQEWLHLKSQSLENLIIED--CRGFRCLGIYTPQLKYLKVENSREEY 688
TLHL + +FD + + +LENL IED I+ LK L++ N R
Sbjct: 175 TLHLGGAQ--NFDGK--IFSSCPNLENLTIEDICLNTIENFNIHALNLKSLEILNWRYSR 230
Query: 689 NPSGL-IEIDAPKLTSLVWKGYMYKDYIFSSPSSLVTVEVDTKINSVDEHEHLNTXXXXX 865
G + + APKLTS + G +F S +L +++ +N V + +
Sbjct: 231 IMRGCKVMLFAPKLTSFKFDG---NTPLFWSEVNLTSLD---DVNVVLQRYYYRHDYQFY 284
Query: 866 XXXXXXXXAIPSPDVVFGKCLRNILKELTNAKSLILSAHGFQTFSEVPDEIDSLPSSFHN 1045
F L +L + +AKSL LS + + S+VP ++ PS F N
Sbjct: 285 VDEDEYISGEDETKQGFCLDLLKMLHQFCSAKSLTLSMNIIEVLSKVPAALNKHPSPFSN 344
Query: 1046 LKFLKL 1063
LK+LKL
Sbjct: 345 LKYLKL 350