BLASTX nr result

ID: Coptis23_contig00008976 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00008976
         (1052 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN81556.1| hypothetical protein VITISV_040398 [Vitis vinife...   343   3e-92
ref|XP_002263959.2| PREDICTED: UPF0308 protein At2g37240, chloro...   343   4e-92
ref|XP_003635545.1| PREDICTED: UPF0308 protein At2g37240, chloro...   343   5e-92
ref|XP_002533575.1| conserved hypothetical protein [Ricinus comm...   330   4e-88
ref|XP_002320012.1| predicted protein [Populus trichocarpa] gi|2...   329   6e-88

>emb|CAN81556.1| hypothetical protein VITISV_040398 [Vitis vinifera]
           gi|342160848|gb|AEL16460.1| type II peroxiredoxin 1
           [Vitis vinifera]
          Length = 256

 Score =  343 bits (881), Expect = 3e-92
 Identities = 173/250 (69%), Positives = 198/250 (79%), Gaps = 2/250 (0%)
 Frame = +3

Query: 60  QTLLFQQPRSLPSLSCPXXXXXXXXXXXXXXXXXVGVKLKKKQ--SAHLVVRASTTTTYE 233
           Q L F QPR+L     P                 V  K +K    + +L+VRAS++++ +
Sbjct: 8   QALQFLQPRNLSFP--PSGRLPSQFPRVCHVKTRVSFKSRKTTDITPNLLVRASSSSS-D 64

Query: 234 SNEAISEILGDVGIFTAAGEPVLFKDLWDQKEGMAVVALLRHFGCPCCWEFASALKDSKS 413
               I EILG+V IFTA+GEPVLFKDLWDQ+EGMAVVALLRHFGCPCCW+ ASALK+SK 
Sbjct: 65  FTSTIGEILGEVSIFTASGEPVLFKDLWDQEEGMAVVALLRHFGCPCCWDLASALKESKE 124

Query: 414 RFDSAGVKLIAVGVGTPSKARMLAERLPFPLDCLYCDPDRKAYDVLGLYYGFGRTFFNPA 593
           RFDSAGVKLIAVGVGTP KAR+LAERLPFPLDCLY DPDRKAYDVLGLYYGFGRTFFNPA
Sbjct: 125 RFDSAGVKLIAVGVGTPDKARILAERLPFPLDCLYADPDRKAYDVLGLYYGFGRTFFNPA 184

Query: 594 SAKVLSRFNTLREAVKNYTIEATPDDRSSVLQQGGMFAFKGKQLLYSRKDEGTGDHAPLS 773
           SAKVL RF  L++AVKNYTI+ATPDD+SSVLQQGGMF FKGKQL+Y+RKDEGTGDHAPL 
Sbjct: 185 SAKVLLRFEALQKAVKNYTIKATPDDKSSVLQQGGMFVFKGKQLVYARKDEGTGDHAPLD 244

Query: 774 EILDICCTYP 803
           ++ D+CC  P
Sbjct: 245 DVFDVCCKVP 254


>ref|XP_002263959.2| PREDICTED: UPF0308 protein At2g37240, chloroplastic [Vitis
           vinifera]
          Length = 255

 Score =  343 bits (880), Expect = 4e-92
 Identities = 163/202 (80%), Positives = 182/202 (90%)
 Frame = +3

Query: 198 LVVRASTTTTYESNEAISEILGDVGIFTAAGEPVLFKDLWDQKEGMAVVALLRHFGCPCC 377
           L+VRAS+T+ +  N  I EILG+V +FTA+GE VLFKDLWDQKEGMAVVALLRHFGCPCC
Sbjct: 54  LLVRASSTSDF--NPDIGEILGEVSVFTASGESVLFKDLWDQKEGMAVVALLRHFGCPCC 111

Query: 378 WEFASALKDSKSRFDSAGVKLIAVGVGTPSKARMLAERLPFPLDCLYCDPDRKAYDVLGL 557
           W+ ASALK+SK RFDSAGVKLIAVGVGTP KAR+LAERLPFPLDCLY DPDRKAYDVLGL
Sbjct: 112 WDLASALKESKERFDSAGVKLIAVGVGTPDKARILAERLPFPLDCLYADPDRKAYDVLGL 171

Query: 558 YYGFGRTFFNPASAKVLSRFNTLREAVKNYTIEATPDDRSSVLQQGGMFAFKGKQLLYSR 737
           YYGFGRTFFNPASAKVL RF  L++AVKNYTI+ATPDD+SSVLQQGGMF FKGKQL+Y+R
Sbjct: 172 YYGFGRTFFNPASAKVLLRFEALQKAVKNYTIKATPDDKSSVLQQGGMFVFKGKQLVYAR 231

Query: 738 KDEGTGDHAPLSEILDICCTYP 803
           KDEGTGDHAPL ++ D+CC  P
Sbjct: 232 KDEGTGDHAPLDDVFDVCCKVP 253


>ref|XP_003635545.1| PREDICTED: UPF0308 protein At2g37240, chloroplastic [Vitis
           vinifera] gi|296087029|emb|CBI33293.3| unnamed protein
           product [Vitis vinifera]
          Length = 256

 Score =  343 bits (879), Expect = 5e-92
 Identities = 175/253 (69%), Positives = 200/253 (79%), Gaps = 5/253 (1%)
 Frame = +3

Query: 60  QTLLFQQPRSL---PSLSCPXXXXXXXXXXXXXXXXXVGVKLKKKQ--SAHLVVRASTTT 224
           QTL F QPR+L   PS   P                 V  K +K    + +L+VRAS+++
Sbjct: 8   QTLQFLQPRNLSFPPSSRLPSQFPRVCHVKTR-----VSFKSRKTTDITPNLLVRASSSS 62

Query: 225 TYESNEAISEILGDVGIFTAAGEPVLFKDLWDQKEGMAVVALLRHFGCPCCWEFASALKD 404
           + +    I EIL +V IFTA+GEPVLFKDLWDQ+EGMAVVALLRHFGCPCCW+ ASALK+
Sbjct: 63  S-DFTSTIGEILREVSIFTASGEPVLFKDLWDQEEGMAVVALLRHFGCPCCWDLASALKE 121

Query: 405 SKSRFDSAGVKLIAVGVGTPSKARMLAERLPFPLDCLYCDPDRKAYDVLGLYYGFGRTFF 584
           SK RFDSAGVKLIAVGVGTP KAR+LAERLPFPLDCLY DPDRKAYDVLGLYYGFGRTFF
Sbjct: 122 SKERFDSAGVKLIAVGVGTPDKARILAERLPFPLDCLYADPDRKAYDVLGLYYGFGRTFF 181

Query: 585 NPASAKVLSRFNTLREAVKNYTIEATPDDRSSVLQQGGMFAFKGKQLLYSRKDEGTGDHA 764
           NPASAKVL RF  L++AVKNYTI+ATPDD+SSVLQQGGMF FKGKQL+Y+RKDEGTGDHA
Sbjct: 182 NPASAKVLLRFEALQKAVKNYTIKATPDDKSSVLQQGGMFVFKGKQLVYARKDEGTGDHA 241

Query: 765 PLSEILDICCTYP 803
           PL ++ D+CC  P
Sbjct: 242 PLDDVFDVCCKVP 254


>ref|XP_002533575.1| conserved hypothetical protein [Ricinus communis]
           gi|223526552|gb|EEF28810.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 255

 Score =  330 bits (846), Expect = 4e-88
 Identities = 155/202 (76%), Positives = 181/202 (89%)
 Frame = +3

Query: 198 LVVRASTTTTYESNEAISEILGDVGIFTAAGEPVLFKDLWDQKEGMAVVALLRHFGCPCC 377
           L++RAS++  Y  N  I ++LGDV IFTAAGEPV+FK+LWDQ EG+AVVALLRHFGCPCC
Sbjct: 55  LIMRASSSD-YAGN--IGDVLGDVTIFTAAGEPVMFKNLWDQNEGIAVVALLRHFGCPCC 111

Query: 378 WEFASALKDSKSRFDSAGVKLIAVGVGTPSKARMLAERLPFPLDCLYCDPDRKAYDVLGL 557
           WE AS LK++KS+FDSAGVKLIA+GVG P+KARMLA+RLPFP+DCLY DP+R+AY+VLGL
Sbjct: 112 WELASVLKEAKSKFDSAGVKLIAIGVGAPNKARMLADRLPFPMDCLYADPNREAYNVLGL 171

Query: 558 YYGFGRTFFNPASAKVLSRFNTLREAVKNYTIEATPDDRSSVLQQGGMFAFKGKQLLYSR 737
           YYGFGRTFFNPASAKV SRF++LR+AVKNYTIEATPDDRS VLQQGGMF FKGKQLLY+R
Sbjct: 172 YYGFGRTFFNPASAKVFSRFDSLRQAVKNYTIEATPDDRSGVLQQGGMFVFKGKQLLYAR 231

Query: 738 KDEGTGDHAPLSEILDICCTYP 803
           KDEGTGDHA L ++ D+CC  P
Sbjct: 232 KDEGTGDHASLDDVFDVCCKVP 253


>ref|XP_002320012.1| predicted protein [Populus trichocarpa] gi|222860785|gb|EEE98327.1|
           predicted protein [Populus trichocarpa]
          Length = 199

 Score =  329 bits (844), Expect = 6e-88
 Identities = 151/186 (81%), Positives = 169/186 (90%)
 Frame = +3

Query: 246 ISEILGDVGIFTAAGEPVLFKDLWDQKEGMAVVALLRHFGCPCCWEFASALKDSKSRFDS 425
           I E+L DV IFT AG+PV+FKDLWDQ EG+AVVALLRHFGCPCCWE AS+LK+SK +FDS
Sbjct: 12  IGEVLSDVSIFTTAGQPVMFKDLWDQNEGIAVVALLRHFGCPCCWELASSLKESKEKFDS 71

Query: 426 AGVKLIAVGVGTPSKARMLAERLPFPLDCLYCDPDRKAYDVLGLYYGFGRTFFNPASAKV 605
           +GVKLIA+GVGTP+KAR+LAERLPFP+DCLY DP+RKAYDVLGLYYG GRTFFNPASAKV
Sbjct: 72  SGVKLIAIGVGTPNKARLLAERLPFPMDCLYADPERKAYDVLGLYYGLGRTFFNPASAKV 131

Query: 606 LSRFNTLREAVKNYTIEATPDDRSSVLQQGGMFAFKGKQLLYSRKDEGTGDHAPLSEILD 785
            SRF+ LR+AVKNYTIEATPDDRS VLQQGGMF FKGKQLLY+RKDEGTGDHAPL +I +
Sbjct: 132 FSRFDALRKAVKNYTIEATPDDRSGVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDIFE 191

Query: 786 ICCTYP 803
           ICC  P
Sbjct: 192 ICCKVP 197


Top