BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00008964
         (1157 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002523621.1| ubiquitin-protein ligase, putative [Ricinus ...   201   4e-87
ref|XP_002282881.1| PREDICTED: F-box protein At5g67140 [Vitis vi...   197   3e-86
ref|XP_002306478.1| predicted protein [Populus trichocarpa] gi|2...   190   3e-82
ref|XP_004149695.1| PREDICTED: F-box protein At5g67140-like [Cuc...   192   4e-82
ref|XP_002865025.1| F-box family protein [Arabidopsis lyrata sub...   187   2e-80

>ref|XP_002523621.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223537183|gb|EEF38816.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 227

 Score =  201 bits (512), Expect(2) = 4e-87
 Identities = 95/125 (76%), Positives = 112/125 (89%)
 Frame = +2

Query: 89  MKREAEIDRLPVDILAHIFFLFSSFTHLAQASSVCKKWRQGVKHSLARKDKLSFAGWKMD 268
           M+   EIDRLP+D+LAHIF L +SFT LA ASSVC+KW++GVK SL R++ LSFAG KMD
Sbjct: 1   MEEGTEIDRLPIDLLAHIFVLINSFTDLAHASSVCRKWKEGVKRSLGRRNSLSFAGLKMD 60

Query: 269 DDSTARIVRYAYNLKELDISRSCWGCQITDDGLYKISLAKCVSNLTSISLWGMTGITDRG 448
           D STAR+VRYAY+LKELDISRS WGCQITD+GLY+ISLAKC+SNLTSISLWGMTGITD+G
Sbjct: 61  DHSTARVVRYAYSLKELDISRSRWGCQITDNGLYEISLAKCISNLTSISLWGMTGITDKG 120

Query: 449 VIQLV 463
           V+QL+
Sbjct: 121 VVQLM 125



 Score =  147 bits (372), Expect(2) = 4e-87
 Identities = 71/102 (69%), Positives = 82/102 (80%)
 Frame = +1

Query: 556 VSRAKSLQHLNVGGTFVTDESLYAIATSCPHLKAIGLWSCRQVTESGLIALVNNCHKLES 735
           +SRA SLQHLNVGGTF+TDESL AIA SCPHLK+IGLWSCR VTE GLI LVN C KLES
Sbjct: 125 MSRANSLQHLNVGGTFITDESLCAIADSCPHLKSIGLWSCRHVTEIGLIYLVNKCRKLES 184

Query: 736 INVFGMRVPVDCFIGLLAISPALQIKAGRVHLNVRRIPLLPI 861
           IN +G RVP+DCF+ LL +SPAL+IK G   LN+    +LP+
Sbjct: 185 INAWGTRVPIDCFLCLLTVSPALRIKHGGFLLNIGNASMLPV 226


>ref|XP_002282881.1| PREDICTED: F-box protein At5g67140 [Vitis vinifera]
           gi|296082395|emb|CBI21400.3| unnamed protein product
           [Vitis vinifera]
          Length = 232

 Score =  197 bits (501), Expect(2) = 3e-86
 Identities = 91/122 (74%), Positives = 111/122 (90%)
 Frame = +2

Query: 98  EAEIDRLPVDILAHIFFLFSSFTHLAQASSVCKKWRQGVKHSLARKDKLSFAGWKMDDDS 277
           EAEI+RLP+D+LA+IF + +SFT LAQASSVC+KW+QGVK SL R++ LSFAGW+MDDDS
Sbjct: 9   EAEIERLPMDLLANIFVMLTSFTDLAQASSVCRKWKQGVKQSLGRRESLSFAGWQMDDDS 68

Query: 278 TARIVRYAYNLKELDISRSCWGCQITDDGLYKISLAKCVSNLTSISLWGMTGITDRGVIQ 457
            AR++R+AY LKELDISRS WGCQ+TD+GLYKISLAKCV+ LTSISLWG+TGITD GV+Q
Sbjct: 69  IARLLRHAYGLKELDISRSRWGCQVTDNGLYKISLAKCVNKLTSISLWGVTGITDSGVVQ 128

Query: 458 LV 463
           L+
Sbjct: 129 LI 130



 Score =  149 bits (375), Expect(2) = 3e-86
 Identities = 71/102 (69%), Positives = 84/102 (82%)
 Frame = +1

Query: 556 VSRAKSLQHLNVGGTFVTDESLYAIATSCPHLKAIGLWSCRQVTESGLIALVNNCHKLES 735
           +SRA SLQHLN+GGTF+TDESL+AIA SCP LK I LWSCR VTE+GL+ LV+ C KL+S
Sbjct: 130 ISRAISLQHLNIGGTFITDESLFAIAESCPCLKTIVLWSCRHVTENGLLVLVSKCRKLQS 189

Query: 736 INVFGMRVPVDCFIGLLAISPALQIKAGRVHLNVRRIPLLPI 861
           INV+G RVPVDCF  LLAI PALQIK GR+ LNV R+ + P+
Sbjct: 190 INVWGTRVPVDCFFALLAIRPALQIKPGRLLLNVERVSMWPV 231


>ref|XP_002306478.1| predicted protein [Populus trichocarpa] gi|222855927|gb|EEE93474.1|
           predicted protein [Populus trichocarpa]
          Length = 228

 Score =  190 bits (483), Expect(2) = 3e-82
 Identities = 89/124 (71%), Positives = 107/124 (86%)
 Frame = +2

Query: 92  KREAEIDRLPVDILAHIFFLFSSFTHLAQASSVCKKWRQGVKHSLARKDKLSFAGWKMDD 271
           + EAEIDRLP+D++A+IF    SFT LAQASSVC+KW++GVK SLA+++ +SFAGWKMDD
Sbjct: 3   REEAEIDRLPIDLVAYIFGFIVSFTDLAQASSVCRKWKEGVKQSLAQRNSMSFAGWKMDD 62

Query: 272 DSTARIVRYAYNLKELDISRSCWGCQITDDGLYKISLAKCVSNLTSISLWGMTGITDRGV 451
            ST R+VR AYNLKELDISRS W CQITD+GLY+ISLA C+ NLTSISLWGM  ITDRGV
Sbjct: 63  VSTTRLVRLAYNLKELDISRSRWDCQITDNGLYQISLANCIGNLTSISLWGMARITDRGV 122

Query: 452 IQLV 463
           +QL+
Sbjct: 123 VQLI 126



 Score =  142 bits (359), Expect(2) = 3e-82
 Identities = 71/102 (69%), Positives = 81/102 (79%)
 Frame = +1

Query: 556 VSRAKSLQHLNVGGTFVTDESLYAIATSCPHLKAIGLWSCRQVTESGLIALVNNCHKLES 735
           +SRA SLQHLN+GGTFVTDESL+AIA SCP LK+I LWSCR VTE GL+ L N C KLES
Sbjct: 126 ISRANSLQHLNIGGTFVTDESLFAIADSCPRLKSIVLWSCRHVTEIGLLNLANKCRKLES 185

Query: 736 INVFGMRVPVDCFIGLLAISPALQIKAGRVHLNVRRIPLLPI 861
           INV+G RVPV+CFI LL ISP+LQIK   V LNV    +LP+
Sbjct: 186 INVWGTRVPVNCFIDLLTISPSLQIKPPGVLLNVGGAAILPV 227


>ref|XP_004149695.1| PREDICTED: F-box protein At5g67140-like [Cucumis sativus]
           gi|449508293|ref|XP_004163274.1| PREDICTED: F-box
           protein At5g67140-like [Cucumis sativus]
          Length = 235

 Score =  192 bits (488), Expect(2) = 4e-82
 Identities = 88/125 (70%), Positives = 108/125 (86%)
 Frame = +2

Query: 89  MKREAEIDRLPVDILAHIFFLFSSFTHLAQASSVCKKWRQGVKHSLARKDKLSFAGWKMD 268
           M+ E EIDRLP+D+LAHIF + +SFT LAQA  VC+KW++GVK SL R+  LSFAGWKMD
Sbjct: 14  MELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRKSLSFAGWKMD 73

Query: 269 DDSTARIVRYAYNLKELDISRSCWGCQITDDGLYKISLAKCVSNLTSISLWGMTGITDRG 448
           D+STAR++R+AY+L+ELDISRS WGC ITD GLY+ISLAKC+ NL SISLWGM GITD+G
Sbjct: 74  DNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEISLAKCIPNLKSISLWGMAGITDKG 133

Query: 449 VIQLV 463
           V+QL+
Sbjct: 134 VVQLI 138



 Score =  140 bits (352), Expect(2) = 4e-82
 Identities = 67/87 (77%), Positives = 78/87 (89%)
 Frame = +1

Query: 556 VSRAKSLQHLNVGGTFVTDESLYAIATSCPHLKAIGLWSCRQVTESGLIALVNNCHKLES 735
           +SRA SLQ+LN+GGTFVTD SLYAIA SCP+LK I LWSCR VTE+GL+ LV+ C KLES
Sbjct: 138 ISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSKCRKLES 197

Query: 736 INVFGMRVPVDCFIGLLAISPALQIKA 816
           INV+GMRVPVDCFIGL+AISP+LQIK+
Sbjct: 198 INVWGMRVPVDCFIGLVAISPSLQIKS 224


>ref|XP_002865025.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297310860|gb|EFH41284.1| F-box family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 228

 Score =  187 bits (476), Expect(2) = 2e-80
 Identities = 88/125 (70%), Positives = 105/125 (84%)
 Frame = +2

Query: 89  MKREAEIDRLPVDILAHIFFLFSSFTHLAQASSVCKKWRQGVKHSLARKDKLSFAGWKMD 268
           M  EA IDRLP+D+LA+IF L +SFT L QAS VCKKWR+ V  S+AR++ LSFAGWKMD
Sbjct: 1   MDEEAAIDRLPLDLLAYIFSLVTSFTVLGQASGVCKKWRKAVNQSMARRESLSFAGWKMD 60

Query: 269 DDSTARIVRYAYNLKELDISRSCWGCQITDDGLYKISLAKCVSNLTSISLWGMTGITDRG 448
           DDST+R+V  AYNLKELDISRS WGC ITD+GLY+I+ A+CVSNL S+SLWGMT ITD G
Sbjct: 61  DDSTSRLVHLAYNLKELDISRSRWGCHITDNGLYQIASARCVSNLNSVSLWGMTAITDSG 120

Query: 449 VIQLV 463
           V+QL+
Sbjct: 121 VVQLI 125



 Score =  139 bits (350), Expect(2) = 2e-80
 Identities = 67/100 (67%), Positives = 77/100 (77%)
 Frame = +1

Query: 556 VSRAKSLQHLNVGGTFVTDESLYAIATSCPHLKAIGLWSCRQVTESGLIALVNNCHKLES 735
           +SR  SLQHLN+GGTF+TDESL+AIA  C HLK IG+W CR VTE GL+ LVN C KLES
Sbjct: 125 ISRTSSLQHLNIGGTFITDESLFAIAERCHHLKTIGMWCCRHVTERGLLVLVNKCGKLES 184

Query: 736 INVFGMRVPVDCFIGLLAISPALQIKAGRVHLNVRRIPLL 855
           IN++G RVPVDCFI LL ISPALQIK   + LN +  P L
Sbjct: 185 INLWGTRVPVDCFIALLTISPALQIKPMELLLNAQNPPPL 224