BLASTX nr result

ID: Coptis23_contig00008908 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00008908
         (720 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284108.1| PREDICTED: dof zinc finger protein DOF3.4 [V...   160   3e-37
ref|XP_003632455.1| PREDICTED: dof zinc finger protein DOF3.4-li...   149   7e-34
ref|XP_003518090.1| PREDICTED: dof zinc finger protein DOF3.4 [G...   147   2e-33
ref|XP_004146854.1| PREDICTED: dof zinc finger protein DOF1.7-li...   145   1e-32
ref|XP_004167286.1| PREDICTED: LOW QUALITY PROTEIN: dof zinc fin...   142   5e-32

>ref|XP_002284108.1| PREDICTED: dof zinc finger protein DOF3.4 [Vitis vinifera]
          Length = 226

 Score =  160 bits (404), Expect = 3e-37
 Identities = 92/195 (47%), Positives = 112/195 (57%), Gaps = 44/195 (22%)
 Frame = +2

Query: 77  GAPPEQEQLPCPRCESNNTKFCYYNNYNSSQPRYFCKACRRYWTQGGALRNIPIGGGTRK 256
           G PP+ E LPCPRC+S NTKFCYYNNYN SQPR+FCK+CRRYWTQGG LRNIP+GGGTRK
Sbjct: 18  GHPPQSEHLPCPRCDSTNTKFCYYNNYNLSQPRHFCKSCRRYWTQGGTLRNIPVGGGTRK 77

Query: 257 NTYKRARTSPNS-------TPQSSI---------TQTTEPSNVSIPLNLPGSFTSLLNTP 388
           N+ KR+RT+ +S       TP + I         T+T + + +S+  ++ G FTSLLN+ 
Sbjct: 78  NS-KRSRTATSSSSSTLETTPANPISVSPVLKAETETPQRNGLSLNGDVSGGFTSLLNSQ 136

Query: 389 GADFVGL---------GFDNMG----PGVWSSLMMNYGHFGG---------------NTW 484
           G  F+ L         GFD MG     GVWS   +     GG               NTW
Sbjct: 137 GPGFLALNGFSLGLGPGFDEMGFGPAKGVWSYPDVGDVVLGGDGTGSGGGSASSSICNTW 196

Query: 485 QLGNDCHAALVDGDC 529
           QL        VDGDC
Sbjct: 197 QLSGG-EVGFVDGDC 210


>ref|XP_003632455.1| PREDICTED: dof zinc finger protein DOF3.4-like [Vitis vinifera]
           gi|147810110|emb|CAN75830.1| hypothetical protein
           VITISV_039634 [Vitis vinifera]
          Length = 220

 Score =  149 bits (375), Expect = 7e-34
 Identities = 92/198 (46%), Positives = 112/198 (56%), Gaps = 39/198 (19%)
 Frame = +2

Query: 59  NKTQHVGAPP-EQEQLPCPRCESNNTKFCYYNNYNSSQPRYFCKACRRYWTQGGALRNIP 235
           +K    GAPP EQE LPCPRC+S NTKFCYYNNYN SQPR+FCK+CRRYWT GG LR+IP
Sbjct: 11  SKPHQTGAPPPEQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIP 70

Query: 236 IGGGTRKNTYKRARTSPNS---------TP----QSSITQTTEP--SNVSIPLNLPGSFT 370
           +GGG+RKN  KR+RT+ +S         TP     S+   T+ P   +V   +N+ GSFT
Sbjct: 71  VGGGSRKNA-KRSRTTTSSASSQEPLPATPVLVSLSTNHATSMPFVGDVKPTVNVCGSFT 129

Query: 371 SLLNTPGADFVGL---------GFDNM----GPGVWSSLMMNYGHFG----------GNT 481
           SLLNT G  F+ L         GF++M    G GVW       G             GNT
Sbjct: 130 SLLNTQGPGFLALGGFGLGLGPGFEDMGFGLGRGVWPFPGAGDGGASGGTGGGTALVGNT 189

Query: 482 WQLGNDCHAALVDGDCIN 535
           WQ  +      V GDC +
Sbjct: 190 WQFESG-EGGFVAGDCFS 206


>ref|XP_003518090.1| PREDICTED: dof zinc finger protein DOF3.4 [Glycine max]
          Length = 234

 Score =  147 bits (372), Expect = 2e-33
 Identities = 90/196 (45%), Positives = 111/196 (56%), Gaps = 47/196 (23%)
 Frame = +2

Query: 83  PPEQEQLPCPRCESNNTKFCYYNNYNSSQPRYFCKACRRYWTQGGALRNIPIGGGTRKNT 262
           PPEQE LPCPRC+S NTKFCYYNNYN SQPR+FCK+CRRYWT GG LR+IP+GGG+RKN 
Sbjct: 25  PPEQENLPCPRCDSTNTKFCYYNNYNYSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNA 84

Query: 263 YKRARTSPNSTPQSSITQTTEPS-------NVSIPL--------------------NLPG 361
            KR+RT   +   SS T +T  S        +  P+                    N+ G
Sbjct: 85  -KRSRTHHVAATSSSSTSSTMTSAQEHHAHTLLAPVASTHYGVLDGDVKQTSNGNGNVCG 143

Query: 362 SFTSLL-NTPGADFVGL-------GFDNMGPGVWSS-----LMMNYGHFGG-------NT 481
           SFTSLL NT G+ F+ L       G+D+MG G+  S      M++ G+ GG       NT
Sbjct: 144 SFTSLLNNTHGSGFLALGGFGLGHGYDDMGFGIGRSGWAFPGMVDGGNIGGAVASSGLNT 203

Query: 482 WQLGNDCHAALVDGDC 529
           WQL +      V GDC
Sbjct: 204 WQLESG-EGGFVSGDC 218


>ref|XP_004146854.1| PREDICTED: dof zinc finger protein DOF1.7-like [Cucumis sativus]
           gi|449476907|ref|XP_004154872.1| PREDICTED: dof zinc
           finger protein DOF1.7-like [Cucumis sativus]
          Length = 202

 Score =  145 bits (365), Expect = 1e-32
 Identities = 75/142 (52%), Positives = 94/142 (66%), Gaps = 11/142 (7%)
 Frame = +2

Query: 86  PEQEQLPCPRCESNNTKFCYYNNYNSSQPRYFCKACRRYWTQGGALRNIPIGGGTRKNTY 265
           PEQEQL CPRC+S NTKFCYYNNYN SQPR+FCK CRRYWT+GGALRNIP+GGGTRKN+ 
Sbjct: 15  PEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGTRKNS- 73

Query: 266 KRARTSPNSTPQSSITQTTEPSNVSIP-----------LNLPGSFTSLLNTPGADFVGLG 412
           KRA  +    P SS T +T P+ +++P           L++PGSF+SLL + G    G  
Sbjct: 74  KRAVAATVKRPPSS-TSSTHPNTITVPDHNPIRGYGGGLDIPGSFSSLLASNGQ--FGNL 130

Query: 413 FDNMGPGVWSSLMMNYGHFGGN 478
            + + P      M+  G F G+
Sbjct: 131 LEGVDPNQSEVKMVELGEFSGS 152


>ref|XP_004167286.1| PREDICTED: LOW QUALITY PROTEIN: dof zinc finger protein DOF3.4-like
           [Cucumis sativus]
          Length = 239

 Score =  142 bits (359), Expect = 5e-32
 Identities = 90/202 (44%), Positives = 108/202 (53%), Gaps = 51/202 (25%)
 Frame = +2

Query: 83  PPEQEQLPCPRCESNNTKFCYYNNYNSSQPRYFCKACRRYWTQGGALRNIPIGGGTRKNT 262
           PPEQE LPCPRC+S NTKFCYYNNYN SQPR+FCK+CRRYWT GG LR+IP+GGG+RKN 
Sbjct: 25  PPEQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNA 84

Query: 263 YKRARTS-PNSTPQSSITQTTEPSN--------------VSIPL-------------NLP 358
            KR+RT  P S    S + +   SN              V +PL             N+ 
Sbjct: 85  -KRSRTCIPTSAAIVSSSSSGSFSNSVSRLDHHPLPATPVLVPLGGGVGGDLKVGGGNMC 143

Query: 359 GSFTSLLNTPGADF---------VGLGFDNMGPGVWSSLM-----------MNYGHFGG- 475
           GSFTSLLNT    F         +G GF+++G G  SS +              G  GG 
Sbjct: 144 GSFTSLLNTHAPGFLSLGGFGLGLGSGFEDVGYGTASSRVAWPFLGLGDGGAGVGGHGGT 203

Query: 476 -NTWQLGNDCHAALV-DGDCIN 535
            NTWQ  N   A  V   DC++
Sbjct: 204 PNTWQFENGDAAGFVGSADCLS 225


Top