BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00008906
         (371 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270184.2| PREDICTED: pentatricopeptide repeat-containi...   193   1e-47
ref|XP_002529286.1| pentatricopeptide repeat-containing protein,...   189   3e-46
ref|XP_004141206.1| PREDICTED: pentatricopeptide repeat-containi...   187   6e-46
ref|XP_003531588.1| PREDICTED: pentatricopeptide repeat-containi...   170   1e-40
ref|XP_002299667.1| predicted protein [Populus trichocarpa] gi|2...   170   1e-40

>ref|XP_002270184.2| PREDICTED: pentatricopeptide repeat-containing protein At1g10910,
           chloroplastic [Vitis vinifera]
           gi|298204537|emb|CBI23812.3| unnamed protein product
           [Vitis vinifera]
          Length = 659

 Score =  193 bits (491), Expect = 1e-47
 Identities = 96/123 (78%), Positives = 108/123 (87%)
 Frame = +1

Query: 1   YVRGGLFQKSRQLLLELETLGYARDEMPYCLLMDGLANAGHVNEAKSIFNEMVTKDVKSD 180
           YVRGGLF+KSR+LL ELE LGYA DEMPYCLLMDGLA +  + EAKSIF EM  K VKSD
Sbjct: 321 YVRGGLFEKSRELLAELEDLGYAEDEMPYCLLMDGLAKSRRILEAKSIFEEMKKKQVKSD 380

Query: 181 GYFDNIMISAYCRSGLLREAKQLARDFEARHERYDLVMLNTML*AYCKAGEMESVMQMLR 360
           GY  +IMISA+CRSGLL+EAKQLARDFEA +++YDLVMLNTML AYC+AGEMESVMQM+R
Sbjct: 381 GYCYSIMISAFCRSGLLKEAKQLARDFEATYDKYDLVMLNTMLCAYCRAGEMESVMQMMR 440

Query: 361 KMD 369
           KMD
Sbjct: 441 KMD 443


>ref|XP_002529286.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223531275|gb|EEF33118.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 672

 Score =  189 bits (479), Expect = 3e-46
 Identities = 91/123 (73%), Positives = 110/123 (89%)
 Frame = +1

Query: 1   YVRGGLFQKSRQLLLELETLGYARDEMPYCLLMDGLANAGHVNEAKSIFNEMVTKDVKSD 180
           YVRGGLF+KS+QLLLELETLGYA DEMPYCLLMDGL+ AG V+EA+S F+EM  K+VKSD
Sbjct: 332 YVRGGLFEKSQQLLLELETLGYAEDEMPYCLLMDGLSKAGRVDEARSFFDEMKEKNVKSD 391

Query: 181 GYFDNIMISAYCRSGLLREAKQLARDFEARHERYDLVMLNTML*AYCKAGEMESVMQMLR 360
           GY  +IMISAYCR  LL EAKQLA++FEA++++YD+V+LNTML AYC+AG+MESVMQ +R
Sbjct: 392 GYAYSIMISAYCRGRLLEEAKQLAKEFEAKYDKYDVVILNTMLCAYCRAGDMESVMQTMR 451

Query: 361 KMD 369
           KMD
Sbjct: 452 KMD 454


>ref|XP_004141206.1| PREDICTED: pentatricopeptide repeat-containing protein At1g10910,
           chloroplastic-like [Cucumis sativus]
          Length = 668

 Score =  187 bits (476), Expect = 6e-46
 Identities = 90/123 (73%), Positives = 108/123 (87%)
 Frame = +1

Query: 1   YVRGGLFQKSRQLLLELETLGYARDEMPYCLLMDGLANAGHVNEAKSIFNEMVTKDVKSD 180
           YVRGGLF+KSR+LL ELE+LGY  +EMPYCLLMDGLA AG + EAK++F+EM  K+VK+D
Sbjct: 323 YVRGGLFEKSRKLLSELESLGYGENEMPYCLLMDGLAKAGSIREAKTVFDEMKAKNVKTD 382

Query: 181 GYFDNIMISAYCRSGLLREAKQLARDFEARHERYDLVMLNTML*AYCKAGEMESVMQMLR 360
           GY  +IMISA+CR GLL EAK LA+DFEA ++RYD+V+LNTML AYC+AGEMESVMQMLR
Sbjct: 383 GYAHSIMISAFCRGGLLEEAKLLAKDFEATYDRYDIVILNTMLCAYCRAGEMESVMQMLR 442

Query: 361 KMD 369
           KMD
Sbjct: 443 KMD 445


>ref|XP_003531588.1| PREDICTED: pentatricopeptide repeat-containing protein At1g10910,
           chloroplastic-like [Glycine max]
          Length = 630

 Score =  170 bits (431), Expect = 1e-40
 Identities = 80/123 (65%), Positives = 102/123 (82%)
 Frame = +1

Query: 1   YVRGGLFQKSRQLLLELETLGYARDEMPYCLLMDGLANAGHVNEAKSIFNEMVTKDVKSD 180
           YV+GGLF+KSR+LL EL++LGYA DEMPYC+ MDGLA AG ++EAK IF+EM+   V+SD
Sbjct: 291 YVKGGLFEKSRELLAELKSLGYAEDEMPYCIFMDGLAKAGQIHEAKLIFDEMMKNHVRSD 350

Query: 181 GYFDNIMISAYCRSGLLREAKQLARDFEARHERYDLVMLNTML*AYCKAGEMESVMQMLR 360
           GY  +IMISA+CR+ L REAKQLA+DFE    +YDLV+LN+ML A+C+ GEME VM+ L+
Sbjct: 351 GYAHSIMISAFCRAKLFREAKQLAKDFETTSNKYDLVILNSMLCAFCRVGEMERVMETLK 410

Query: 361 KMD 369
           KMD
Sbjct: 411 KMD 413


>ref|XP_002299667.1| predicted protein [Populus trichocarpa] gi|222846925|gb|EEE84472.1|
           predicted protein [Populus trichocarpa]
          Length = 562

 Score =  170 bits (431), Expect = 1e-40
 Identities = 80/123 (65%), Positives = 105/123 (85%)
 Frame = +1

Query: 1   YVRGGLFQKSRQLLLELETLGYARDEMPYCLLMDGLANAGHVNEAKSIFNEMVTKDVKSD 180
           YVRGGLF+KSR LL+EL+TLG+A++EMPYCLLMDGLA  G ++EA+S+FNEM  K VKS 
Sbjct: 224 YVRGGLFEKSRDLLVELDTLGFAKNEMPYCLLMDGLAKNGLLDEARSVFNEMKEKRVKSG 283

Query: 181 GYFDNIMISAYCRSGLLREAKQLARDFEARHERYDLVMLNTML*AYCKAGEMESVMQMLR 360
           GY  +IMIS++CR GL  EAK+LA +FEA++++YD+V+LNT+L AYC+ GE ESVM+ +R
Sbjct: 284 GYSYSIMISSFCRGGLFEEAKELAEEFEAKYDKYDVVILNTILCAYCRTGEKESVMRTMR 343

Query: 361 KMD 369
           KMD
Sbjct: 344 KMD 346