BLASTX nr result
ID: Coptis23_contig00008849
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00008849
(1461 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002266510.1| PREDICTED: SKP1-interacting partner 15 [Viti... 498 e-138
ref|XP_002300927.1| predicted protein [Populus trichocarpa] gi|2... 462 e-127
ref|XP_002887662.1| F-box family protein [Arabidopsis lyrata sub... 457 e-126
ref|NP_565142.1| SKP1-interacting partner 15 [Arabidopsis thalia... 455 e-125
ref|XP_002307489.1| f-box family protein [Populus trichocarpa] g... 451 e-124
>ref|XP_002266510.1| PREDICTED: SKP1-interacting partner 15 [Vitis vinifera]
Length = 374
Score = 498 bits (1281), Expect = e-138
Identities = 246/377 (65%), Positives = 288/377 (76%), Gaps = 7/377 (1%)
Frame = +3
Query: 156 MDTSPLHHLPQDTLHQIFSHLPLRQIIICRSVCRFFNHILTSQSFLTLISTRSPPLRLIA 335
MD SP++ LPQDTLH IFS LPLRQIIICRSVC+FF LT+ +F+ LIST+ PPL LIA
Sbjct: 1 MDASPIYRLPQDTLHYIFSTLPLRQIIICRSVCKFFYQTLTAPAFMELISTQ-PPLNLIA 59
Query: 336 LRPXXXXXXXXXXXLI-------FLHVYDPNLNQWLKFSLNFLPCKIPIPVSSSLGLVYL 494
LRP LHV+DP+ NQW++F L+FLP + P PV+SSLGLVYL
Sbjct: 60 LRPPHHHHHHHHHHHNRDVSSHNALHVFDPSSNQWVRFPLSFLPFRSPTPVASSLGLVYL 119
Query: 495 WVDSPXXXXXXXHKSLVVCNPLTRVYRVLPQLGSAWSKHGTVLVGSAHRVLVLTELAALF 674
W DS +KSL+VCNPLTR ++VLPQLGSAWS+HG+VLVGS +RVLVLTELA L+
Sbjct: 120 WADS--LNSLESNKSLIVCNPLTRSFQVLPQLGSAWSRHGSVLVGSPNRVLVLTELATLY 177
Query: 675 YSGSGSWLKFSSNLPSKPRSPVLVHDSVFALCDVGSPWRSQWKLFNCTITELEKSRGWNR 854
+SGS WLKFSSNLPSKPRSP+LV DSV ALCDVGSPWRSQWKLF CT+ L+KS+ W R
Sbjct: 178 FSGSDQWLKFSSNLPSKPRSPILVSDSVLALCDVGSPWRSQWKLFACTLNHLQKSQPWTR 237
Query: 855 LEKHEWGDVFDILKRPRLVHGIGNRILMVGGLKSSFSLATLCSXXXXXXXXXXXXEWDEA 1034
L++HEWGDVFDIL+RPRLV G+GN+ILMVGGLKSSFSL +CS EWDE
Sbjct: 238 LDRHEWGDVFDILRRPRLVKGLGNQILMVGGLKSSFSLNAVCSTILILRLDLDSLEWDEL 297
Query: 1035 GRMPLDMFNYFHESGKFKVFGGGDRVCFSAKRVKGLAMWDCGLGAGKGEWKWIDGVPGNG 1214
GRMP +MF F ES KFKVFG G+RVCFSAKRV LA+WD GKG+W+WI+GVPGNG
Sbjct: 298 GRMPPEMFRCFQESSKFKVFGAGNRVCFSAKRVGRLALWDYSTETGKGDWRWINGVPGNG 357
Query: 1215 DGLCRGFVYEARLDAVP 1265
DGL RGFV++ARL A+P
Sbjct: 358 DGLFRGFVFQARLTALP 374
>ref|XP_002300927.1| predicted protein [Populus trichocarpa] gi|222842653|gb|EEE80200.1|
predicted protein [Populus trichocarpa]
Length = 376
Score = 462 bits (1189), Expect = e-127
Identities = 233/382 (60%), Positives = 286/382 (74%), Gaps = 12/382 (3%)
Frame = +3
Query: 156 MDTSPLHHLPQDTLHQIFSHLPLRQIIICRSVCRFFNHILTSQSFLTLISTRSPPLRLIA 335
MD SP++ LPQDTLHQIFS LPLRQI+ICRSVC+FFN +LTS SF+ LIST+ PPLR +A
Sbjct: 1 MDDSPINRLPQDTLHQIFSSLPLRQIMICRSVCKFFNQMLTSPSFVDLISTQ-PPLRFLA 59
Query: 336 LRPXXXXXXXXXXX-------LIFLHVYDPNLNQWLKFSLNFLPCKIPIPVSSSLGLVYL 494
LRP + +LHV+DP+ NQWL+FSL+FLP + P PV+S+ GL+YL
Sbjct: 60 LRPPHHHHHLHHQRQNSHVSSVPYLHVFDPDQNQWLRFSLSFLPFRSPHPVASASGLIYL 119
Query: 495 WVDSPXXXXXXXHKSLVVCNPLTRVYRVLPQLGSAWSKHGTVLVGSA-HRVLVLTELAAL 671
W +SP ++SLVVCNPLTR ++VLPQLGSAWS+HG+VLV S HRV+VLTELAAL
Sbjct: 120 WGESPTSIES--NRSLVVCNPLTRQFQVLPQLGSAWSRHGSVLVDSVNHRVMVLTELAAL 177
Query: 672 FYSGSG---SWLKFSSNLPSKPRSPVLVHDSVFALCDVGSPWRSQWKLFNCTITELEKS- 839
++S + SWL FS+NLPSKPRSP+L+ DSVFALCDVGSPWRSQWKLF C +++L +
Sbjct: 178 YFSNTNKTNSWLTFSANLPSKPRSPILISDSVFALCDVGSPWRSQWKLFTCILSKLNNNY 237
Query: 840 RGWNRLEKHEWGDVFDILKRPRLVHGIGNRILMVGGLKSSFSLATLCSXXXXXXXXXXXX 1019
W LE+ EWGD+FDI+KRPRLV G GN++LM+GGLKS+FSL T CS
Sbjct: 238 NNWVCLERQEWGDIFDIIKRPRLVRGKGNKLLMIGGLKSNFSLNTSCSTILILRLDLERL 297
Query: 1020 EWDEAGRMPLDMFNYFHESGKFKVFGGGDRVCFSAKRVKGLAMWDCGLGAGKGEWKWIDG 1199
EW+EAGRMP+DM+ F ES K KVFGGGDRVCFSAKR++ LA+WD G W+WI+G
Sbjct: 298 EWEEAGRMPVDMYRSFQESSKLKVFGGGDRVCFSAKRMRKLALWDDCDGV---VWRWIEG 354
Query: 1200 VPGNGDGLCRGFVYEARLDAVP 1265
VP GDGLCRGFV+EA A+P
Sbjct: 355 VPVGGDGLCRGFVFEAGRTALP 376
>ref|XP_002887662.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
gi|297333503|gb|EFH63921.1| F-box family protein
[Arabidopsis lyrata subsp. lyrata]
Length = 374
Score = 457 bits (1175), Expect = e-126
Identities = 231/382 (60%), Positives = 279/382 (73%), Gaps = 12/382 (3%)
Frame = +3
Query: 156 MDTSPLHHLPQDTLHQIFSHLPLRQIIICRSVCRFFNHILTSQSFLTLISTRSPPLRLIA 335
M++SP++ LP D+LHQIFS LPLR I++CRSVC+FFN +LTSQ F+ +ISTR PPL L+A
Sbjct: 1 MESSPINRLPPDSLHQIFSSLPLRDIMVCRSVCKFFNQLLTSQCFIEIISTR-PPLNLLA 59
Query: 336 LRPXXXXXXXXXXX-------LIFLHVYDPNLNQWLKFSLNFLPCKIPIPVSSSLGLVYL 494
LRP ++HVYDP NQW +F+L+FLP + P PV+SS GL+YL
Sbjct: 60 LRPPHHHHSHRHSGNGHATNIRPYIHVYDPEQNQWFRFNLDFLPFRSPQPVASSSGLIYL 119
Query: 495 WVDSPXXXXXXXHKSLVVCNPLTRVYRVLPQLGSAWSKHGTVLVGSAHRVLVLTELAALF 674
W DS KSLV CNPLTR ++VLPQLGSAWS+HGTVLV S +RV+VLTELAAL+
Sbjct: 120 WGDS--IDLAESSKSLVACNPLTRQFKVLPQLGSAWSRHGTVLVDSVNRVMVLTELAALY 177
Query: 675 YSGS---GSWLKFSSNLPSKPRSPVLVHDSVFALCDVGSPWRSQWKLFNCTITELEKSR- 842
YSG+ W KFSSNLPSKPRSPVL+ SVFALCDVGSPWRSQWKLF+C +T L +
Sbjct: 178 YSGTVVANQWFKFSSNLPSKPRSPVLMSSSVFALCDVGSPWRSQWKLFSCKLTNLTITHT 237
Query: 843 GWNRLEKHEWGDVFDILKRPRLVHGIGN-RILMVGGLKSSFSLATLCSXXXXXXXXXXXX 1019
W LEKHEWGD+FDI+KRPRL+ G G+ ++LM+GGLKS+FSL CS
Sbjct: 238 NWVCLEKHEWGDIFDIIKRPRLLRGNGDSKLLMIGGLKSTFSLNPACSTILILRLDLESL 297
Query: 1020 EWDEAGRMPLDMFNYFHESGKFKVFGGGDRVCFSAKRVKGLAMWDCGLGAGKGEWKWIDG 1199
EW+EAGRMPL+M+ F ES KFKVFGGGDRV FSAKR+ LAMWDC G W+WIDG
Sbjct: 298 EWEEAGRMPLEMYRGFQESSKFKVFGGGDRVYFSAKRMGKLAMWDCWEG-----WRWIDG 352
Query: 1200 VPGNGDGLCRGFVYEARLDAVP 1265
VPG DGLCRGFV++A+L +P
Sbjct: 353 VPGYADGLCRGFVFDAKLTMMP 374
>ref|NP_565142.1| SKP1-interacting partner 15 [Arabidopsis thaliana]
gi|75098682|sp|O49279.1|SKI15_ARATH RecName:
Full=SKP1-interacting partner 15; AltName: Full=F-box
only protein 3 gi|2829924|gb|AAC00632.1| Unknown protein
[Arabidopsis thaliana] gi|17473630|gb|AAL38278.1| unknown
protein [Arabidopsis thaliana] gi|21553606|gb|AAM62699.1|
F-box protein AtFBX3 [Arabidopsis thaliana]
gi|30725584|gb|AAP37814.1| At1g76920 [Arabidopsis
thaliana] gi|332197782|gb|AEE35903.1| SKP1-interacting
partner 15 [Arabidopsis thaliana]
Length = 374
Score = 455 bits (1171), Expect = e-125
Identities = 231/382 (60%), Positives = 280/382 (73%), Gaps = 12/382 (3%)
Frame = +3
Query: 156 MDTSPLHHLPQDTLHQIFSHLPLRQIIICRSVCRFFNHILTSQSFLTLISTRSPPLRLIA 335
M++SP++ LP D+LHQIFS LP+R I+ICRSVC+FFN +LTSQ F+ +ISTR PPL L+A
Sbjct: 1 MESSPVNCLPPDSLHQIFSSLPIRDIMICRSVCKFFNQLLTSQCFIEIISTR-PPLNLLA 59
Query: 336 LRPXXXXXXXXXXX-------LIFLHVYDPNLNQWLKFSLNFLPCKIPIPVSSSLGLVYL 494
LRP ++HVYDP NQW +F+L+FLP + P PV+SS GL+YL
Sbjct: 60 LRPPHHHHSHRHSGNGHATNIRPYIHVYDPEQNQWFRFNLDFLPFRSPQPVASSSGLIYL 119
Query: 495 WVDSPXXXXXXXHKSLVVCNPLTRVYRVLPQLGSAWSKHGTVLVGSAHRVLVLTELAALF 674
W DS KSLV CNPLTR ++VLPQLGSAWS+HGTVLV S +RV+VLTELAAL+
Sbjct: 120 WGDS--IDLAESSKSLVACNPLTRQFKVLPQLGSAWSRHGTVLVDSVNRVMVLTELAALY 177
Query: 675 YSGS---GSWLKFSSNLPSKPRSPVLVHDSVFALCDVGSPWRSQWKLFNCTITELEKSR- 842
YSG+ WLKFSSNLPSKPRSPVL+ SVFALCDVGSPWRSQWKLF+C +T L +
Sbjct: 178 YSGTVVANQWLKFSSNLPSKPRSPVLMSSSVFALCDVGSPWRSQWKLFSCKLTNLTITHT 237
Query: 843 GWNRLEKHEWGDVFDILKRPRLVHGIGN-RILMVGGLKSSFSLATLCSXXXXXXXXXXXX 1019
W LEKHEWGD+FDI+KRPRL+ G G+ ++LM+GGLKS+FSL CS
Sbjct: 238 NWVCLEKHEWGDIFDIIKRPRLLRGNGDSKLLMIGGLKSTFSLNPACSTILILRLDLESL 297
Query: 1020 EWDEAGRMPLDMFNYFHESGKFKVFGGGDRVCFSAKRVKGLAMWDCGLGAGKGEWKWIDG 1199
EW+EAGRMPL+M+ F ES KFKVFGGGDRV FSAKR+ LAMWDC G W+WI+G
Sbjct: 298 EWEEAGRMPLEMYRGFQESSKFKVFGGGDRVYFSAKRMGKLAMWDCWQG-----WRWIEG 352
Query: 1200 VPGNGDGLCRGFVYEARLDAVP 1265
VPG DGLCRGFV++A+L +P
Sbjct: 353 VPGYADGLCRGFVFDAKLTLMP 374
>ref|XP_002307489.1| f-box family protein [Populus trichocarpa]
gi|222856938|gb|EEE94485.1| f-box family protein [Populus
trichocarpa]
Length = 374
Score = 451 bits (1159), Expect = e-124
Identities = 231/379 (60%), Positives = 281/379 (74%), Gaps = 10/379 (2%)
Frame = +3
Query: 156 MDTSPLHHLPQDTLHQIFSHLPLRQIIICRSVCRFFNHILTSQSFLTLISTRSPPLRLIA 335
MD SP++ LPQDTL+QIFS LPLRQI+ICRSVC+FFN +LTS SF+ LIST++P LR +A
Sbjct: 1 MDASPINRLPQDTLNQIFSSLPLRQIMICRSVCKFFNQMLTSPSFMDLISTQTP-LRFLA 59
Query: 336 LRPXXXXXXXXXXX-----LIFLHVYDPNLNQWLKFSLNFLPCKIPIPVSSSLGLVYLWV 500
LRP L +LHV+DP+ NQWL+FSL+FLP + P PV+S+ GL+YLW
Sbjct: 60 LRPPHHHHHHQRHNSHVSSLPYLHVFDPDQNQWLRFSLSFLPFRSPQPVASASGLLYLWG 119
Query: 501 DSPXXXXXXXHKSLVVCNPLTRVYRVLPQLGSAWSKHGTVLVGSA-HRVLVLTELAALFY 677
+SP ++SLVVCNPLTR ++VLPQLGSAWS+HG+VLV S HRV+VLTELAAL++
Sbjct: 120 ESPNSLES--NRSLVVCNPLTRQFQVLPQLGSAWSRHGSVLVDSVNHRVMVLTELAALYF 177
Query: 678 SGSG---SWLKFSSNLPSKPRSPVLVHDSVFALCDVGSPWRSQWKLFNCTITELEKS-RG 845
S + SWL FS+NLPSKPRSP+L+ DSVFALCDVGS WRSQWKLF CT+T L S
Sbjct: 178 SNTNKTNSWLTFSANLPSKPRSPILISDSVFALCDVGSRWRSQWKLFTCTLTNLNNSYNN 237
Query: 846 WNRLEKHEWGDVFDILKRPRLVHGIGNRILMVGGLKSSFSLATLCSXXXXXXXXXXXXEW 1025
W L + EWGD+FDI+KRPRLV G GN++LM+G LKS+FSL CS EW
Sbjct: 238 WVCLGRLEWGDIFDIIKRPRLVRGKGNKLLMIGVLKSNFSLNPSCSTILILRLDLARMEW 297
Query: 1026 DEAGRMPLDMFNYFHESGKFKVFGGGDRVCFSAKRVKGLAMWDCGLGAGKGEWKWIDGVP 1205
+EAGRMP +M+ F ES KFK+FGGGDRVC SAKRV LA+WD G W+WI+GVP
Sbjct: 298 EEAGRMPSEMYKSFQESSKFKIFGGGDRVCLSAKRVGKLALWDDCDGV---VWRWIEGVP 354
Query: 1206 GNGDGLCRGFVYEARLDAV 1262
G GDGLCRGFV+EA L A+
Sbjct: 355 GGGDGLCRGFVFEASLTAL 373