BLASTX nr result
ID: Coptis23_contig00008837
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00008837
(683 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN76821.1| hypothetical protein VITISV_017285 [Vitis vinifera] 252 6e-65
ref|XP_004149950.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri... 251 7e-65
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi... 251 7e-65
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana] 251 9e-65
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal... 251 9e-65
>emb|CAN76821.1| hypothetical protein VITISV_017285 [Vitis vinifera]
Length = 672
Score = 252 bits (643), Expect = 6e-65
Identities = 122/211 (57%), Positives = 154/211 (72%)
Frame = -3
Query: 636 SKLWHDRFGHLNYGSFKQLSTKAMVKGLPQISLTDDVCEDCQIGKLHRSPFPLQST*QAK 457
S LWH R+GHLN+G K L K MV GLPQIS+ VCE+C +GK HRS FP + +AK
Sbjct: 315 SWLWHLRYGHLNFGGLKTLQQKHMVTGLPQISIPSQVCEECVVGKQHRSQFPQGKSRRAK 374
Query: 456 KPLQLVHSDLCSPIRVTSHGGNRYFISFIDDYSRKVWVYFLKEKSDAFQAFKDFKAKVEK 277
L+LVHSD+C I TS+GG +Y I FIDDYSRK WV FL+EKS+AF AFK FKA+VEK
Sbjct: 375 NVLELVHSDICGLINPTSNGGKKYLIIFIDDYSRKTWVSFLQEKSEAFSAFKSFKARVEK 434
Query: 276 ISGLRIPSLGTNRGGEYLPTEFEIYCRDHGIRHQLTARYTPQQNGVCERKNRIIMDMVRC 97
+G I L T+RGGEY EFE +C D GIR +LTA YTPQQNGV ERKNR I++MVR
Sbjct: 435 ETGRSIKILRTDRGGEYCSNEFEHFCDDQGIRRELTAAYTPQQNGVSERKNRTILNMVRS 494
Query: 96 MLSRKKLDKVLWAEAVSCAVYLINRSLMKSL 4
+L+R K+ K W EA++ +++++N+SL S+
Sbjct: 495 LLARGKIPKSFWPEAINWSIHVLNKSLTFSV 525
>ref|XP_004149950.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101216349
[Cucumis sativus]
Length = 1830
Score = 251 bits (642), Expect = 7e-65
Identities = 119/222 (53%), Positives = 157/222 (70%)
Frame = -3
Query: 669 LSCFTSVDNGNSKLWHDRFGHLNYGSFKQLSTKAMVKGLPQISLTDDVCEDCQIGKLHRS 490
L CF ++ N S LWH RFGHL++ + + + MV+G+ I D +CE C GK HR+
Sbjct: 425 LVCFETLVNDTSWLWHCRFGHLSFDTLSHMCQQHMVRGMSNIKKEDQLCEACVFGKHHRN 484
Query: 489 PFPLQST*QAKKPLQLVHSDLCSPIRVTSHGGNRYFISFIDDYSRKVWVYFLKEKSDAFQ 310
FP + +A KPL+LVH+DLC P+R T+HGGNRYF++FIDDYSRK W+Y LKEKS F+
Sbjct: 485 SFPTGGSWRASKPLELVHTDLCGPMRTTTHGGNRYFLTFIDDYSRKTWIYLLKEKSATFE 544
Query: 309 AFKDFKAKVEKISGLRIPSLGTNRGGEYLPTEFEIYCRDHGIRHQLTARYTPQQNGVCER 130
FK FKA VE S L++ SL ++RGGEY+ F + +++GI+HQ T R TPQQNGV ER
Sbjct: 545 CFKTFKAMVENESNLKLKSLRSDRGGEYI--VFADFLKENGIKHQKTLRRTPQQNGVAER 602
Query: 129 KNRIIMDMVRCMLSRKKLDKVLWAEAVSCAVYLINRSLMKSL 4
KNRIIM++ R ML KKL W +AV+CAVYL+NR+ KS+
Sbjct: 603 KNRIIMELARSMLKAKKLPDQFWGDAVTCAVYLLNRASTKSV 644
>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
polyprotein, putative [Arabidopsis thaliana]
Length = 1320
Score = 251 bits (642), Expect = 7e-65
Identities = 123/220 (55%), Positives = 157/220 (71%)
Frame = -3
Query: 663 CFTSVDNGNSKLWHDRFGHLNYGSFKQLSTKAMVKGLPQISLTDDVCEDCQIGKLHRSPF 484
C S LWH RFGHLN+G + LS K MV+GLP I+ + VCE C +GK + F
Sbjct: 456 CLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSF 515
Query: 483 PLQST*QAKKPLQLVHSDLCSPIRVTSHGGNRYFISFIDDYSRKVWVYFLKEKSDAFQAF 304
P +S+ +A+KPL+L+H+D+C PI+ S G + YF+ FIDD+SRK WVYFLKEKS+ F+ F
Sbjct: 516 PKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIF 575
Query: 303 KDFKAKVEKISGLRIPSLGTNRGGEYLPTEFEIYCRDHGIRHQLTARYTPQQNGVCERKN 124
K FKA VEK SGL I ++ ++RGGE+ EF YC D+GIR QLT +PQQNGV ERKN
Sbjct: 576 KKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKN 635
Query: 123 RIIMDMVRCMLSRKKLDKVLWAEAVSCAVYLINRSLMKSL 4
R I++M R ML K+L K LWAEAV+CAVYL+NRS KS+
Sbjct: 636 RTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSV 675
>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
Length = 1352
Score = 251 bits (641), Expect = 9e-65
Identities = 123/220 (55%), Positives = 157/220 (71%)
Frame = -3
Query: 663 CFTSVDNGNSKLWHDRFGHLNYGSFKQLSTKAMVKGLPQISLTDDVCEDCQIGKLHRSPF 484
C S LWH RFGHLN+G + LS K MV+GLP I+ + VCE C +GK + F
Sbjct: 456 CLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSF 515
Query: 483 PLQST*QAKKPLQLVHSDLCSPIRVTSHGGNRYFISFIDDYSRKVWVYFLKEKSDAFQAF 304
P +S+ +A+KPL+L+H+D+C PI+ S G + YF+ FIDD+SRK WVYFLKEKS+ F+ F
Sbjct: 516 PKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIF 575
Query: 303 KDFKAKVEKISGLRIPSLGTNRGGEYLPTEFEIYCRDHGIRHQLTARYTPQQNGVCERKN 124
K FKA VEK SGL I ++ ++RGGE+ EF YC D+GIR QLT +PQQNGV ERKN
Sbjct: 576 KKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKN 635
Query: 123 RIIMDMVRCMLSRKKLDKVLWAEAVSCAVYLINRSLMKSL 4
R I++M R ML K+L K LWAEAV+CAVYL+NRS KS+
Sbjct: 636 RTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSV 675
>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
Length = 1352
Score = 251 bits (641), Expect = 9e-65
Identities = 123/220 (55%), Positives = 157/220 (71%)
Frame = -3
Query: 663 CFTSVDNGNSKLWHDRFGHLNYGSFKQLSTKAMVKGLPQISLTDDVCEDCQIGKLHRSPF 484
C S LWH RFGHLN+G + LS K MV+GLP I+ + VCE C +GK + F
Sbjct: 456 CLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSF 515
Query: 483 PLQST*QAKKPLQLVHSDLCSPIRVTSHGGNRYFISFIDDYSRKVWVYFLKEKSDAFQAF 304
P +S+ +A+KPL+L+H+D+C PI+ S G + YF+ FIDD+SRK WVYFLKEKS+ F+ F
Sbjct: 516 PKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIF 575
Query: 303 KDFKAKVEKISGLRIPSLGTNRGGEYLPTEFEIYCRDHGIRHQLTARYTPQQNGVCERKN 124
K FKA VEK SGL I ++ ++RGGE+ EF YC D+GIR QLT +PQQNGV ERKN
Sbjct: 576 KKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKN 635
Query: 123 RIIMDMVRCMLSRKKLDKVLWAEAVSCAVYLINRSLMKSL 4
R I++M R ML K+L K LWAEAV+CAVYL+NRS KS+
Sbjct: 636 RTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSV 675