BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00008774
         (1244 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274318.1| PREDICTED: pentatricopeptide repeat-containi...   375   e-101
ref|XP_004140747.1| PREDICTED: pentatricopeptide repeat-containi...   372   e-100
ref|NP_567622.1| pentatricopeptide repeat-containing protein [Ar...   341   3e-91
ref|XP_002867860.1| EMB1417 [Arabidopsis lyrata subsp. lyrata] g...   340   6e-91
ref|XP_002513638.1| pentatricopeptide repeat-containing protein,...   335   1e-89

>ref|XP_002274318.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21190
            [Vitis vinifera] gi|302143769|emb|CBI22630.3| unnamed
            protein product [Vitis vinifera]
          Length = 295

 Score =  375 bits (964), Expect = e-101
 Identities = 192/299 (64%), Positives = 223/299 (74%)
 Frame = -2

Query: 1120 MLTLKYSSVFLSTKLDSVNISCKPSSVTVCAAKGPRPRYPRVWKSRTKIGTISKSKKLVD 941
            ML L+YS   ++ +LD+V I   P S+ VC AKGPRPRYPRVWK+R +IGTISKS KLVD
Sbjct: 1    MLCLRYSPATITRRLDAVEIPKNPRSIVVCGAKGPRPRYPRVWKTRQRIGTISKSAKLVD 60

Query: 940  CIKGLSNVKEEVYGALDAFIAWELEFPLITVXXXXXXXXXXXXXKRIIQVTKWMLSKGQG 761
            CIKGLSNVKEEVYGALD+FIAWELEFPLITV             KRIIQVTKWMLSKGQG
Sbjct: 61   CIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEDQKEWKRIIQVTKWMLSKGQG 120

Query: 760  RTKGSYFMLLNALAEDGRLDEAEELWGQVFSENLESLPRIFFNKMISIYYSRGMHDKMFE 581
            RT GSYF LLNALAEDGRLDEAEELW ++FSENLESLPR+F++KMISIYY R MH+KMFE
Sbjct: 121  RTMGSYFTLLNALAEDGRLDEAEELWTKLFSENLESLPRVFYDKMISIYYRRDMHEKMFE 180

Query: 580  VFADMEELGVRPNDAIVSMVGDVFQKLEMLDKYEKLKQKYPPSKWEYRYFKGKRVKVLAK 401
            +FADMEELG+RPN +IV MVGDVFQKL MLDKYEKL++KYPP KWEYRY KGKRV++ AK
Sbjct: 181  IFADMEELGIRPNTSIVKMVGDVFQKLGMLDKYEKLQKKYPPPKWEYRYIKGKRVRIRAK 240

Query: 400  QVSLLEEAKHKNGYIEEAKDNLSEPDEDVNTDVDAVNDEANNHINEFDEEVN*CLKEAD 224
                            E+ D      +D    V+ +ND+  N  NE  +E +  + +AD
Sbjct: 241  LTG-------------ESDDPGEAESDDPGEAVNEINDKTENS-NEMHDEADSSVDDAD 285


>ref|XP_004140747.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21190-like
            [Cucumis sativus]
          Length = 331

 Score =  372 bits (954), Expect = e-100
 Identities = 191/298 (64%), Positives = 225/298 (75%), Gaps = 17/298 (5%)
 Frame = -2

Query: 1126 YRMLTLKYSSVFLSTKLDSVNISCKPSSVTVCAAKGPRPRYPRVWKSRTKIGTISKSKKL 947
            YRMLTL Y+    S +++SVN S  PSS  VCAAKGPRPRYPRVWK++ +IGTISK+ KL
Sbjct: 17   YRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKL 76

Query: 946  VDCIKGLSNVKEEVYGALDAFIAWELEFPLITVXXXXXXXXXXXXXKRIIQVTKWMLSKG 767
            VDC+KGLSNVKEEVYGALD+FIAWELEFPLITV             KRIIQ+TKWMLSKG
Sbjct: 77   VDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKG 136

Query: 766  QGRTKGSYFMLLNALAEDGRLDEAEELWGQVFSENLESLPRIFFNKMISIYYSRGMHDKM 587
            QGRT GSYF LLNALAEDGRLDEAEELW ++FS++LES+PRIFF+KMIS+YY + MHDK+
Sbjct: 137  QGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKL 196

Query: 586  FEVFADMEELGVRPNDAIVSMVGDVFQKLEMLDKYEKLKQKYPPSKWEYRYFKGKRVKVL 407
            FEVFADMEELGV+PN AIV+ VG+VFQ+L MLDKY+KL +KYPP KWEYRY KGKRVK+ 
Sbjct: 197  FEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIR 256

Query: 406  AKQVSLLEEAKHKNGYIEEAK-----------------DNLSEPDEDVNTDVDAVNDE 284
            AK +S  E     NG  E AK                 D+  E DED++ D D + ++
Sbjct: 257  AKYLS--ENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDEILED 312


>ref|NP_567622.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75246109|sp|Q8LG95.1|PP332_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At4g21190; AltName: Full=Protein EMBRYO DEFECTIVE 1417
            gi|21618230|gb|AAM67280.1| unknown [Arabidopsis thaliana]
            gi|51969238|dbj|BAD43311.1| putative protein [Arabidopsis
            thaliana] gi|51971351|dbj|BAD44340.1| putative protein
            [Arabidopsis thaliana] gi|51971365|dbj|BAD44347.1|
            putative protein [Arabidopsis thaliana]
            gi|332659017|gb|AEE84417.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 307

 Score =  341 bits (874), Expect = 3e-91
 Identities = 178/286 (62%), Positives = 212/286 (74%), Gaps = 7/286 (2%)
 Frame = -2

Query: 1120 MLTLKYSSVFL-------STKLDSVNISCKPSSVTVCAAKGPRPRYPRVWKSRTKIGTIS 962
            ML+L+YS  +L       STKL     + KP++V VCAA+GPRPR PRVWK+R +IGTIS
Sbjct: 1    MLSLRYSLPYLLLQTRESSTKL----FTKKPNNVVVCAARGPRPRSPRVWKTRKRIGTIS 56

Query: 961  KSKKLVDCIKGLSNVKEEVYGALDAFIAWELEFPLITVXXXXXXXXXXXXXKRIIQVTKW 782
            K+ K++ CIKGLSNVKEEVYGALD+FIAWELEFPL+ V             K+IIQVTKW
Sbjct: 57   KAAKMIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKW 116

Query: 781  MLSKGQGRTKGSYFMLLNALAEDGRLDEAEELWGQVFSENLESLPRIFFNKMISIYYSRG 602
            MLSKGQGRT G+YF LLNALAED RLDEAEELW ++F E+LE  PR FFNKMISIYY R 
Sbjct: 117  MLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRD 176

Query: 601  MHDKMFEVFADMEELGVRPNDAIVSMVGDVFQKLEMLDKYEKLKQKYPPSKWEYRYFKGK 422
            MH K+FEVFADMEELGV+PN AIVSMVG VF KLEM DKYEKL +KYPP +WE+RY KG+
Sbjct: 177  MHQKLFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKGR 236

Query: 421  RVKVLAKQVSLLEEAKHKNGYIEEAKDNLSEPDEDVNTDVDAVNDE 284
            RVKV AKQ++ L E +      E+  DN  E +E+   D+    ++
Sbjct: 237  RVKVKAKQLNELSEGEGGLSSDEDKIDNEIESEEEDGEDLSEEEED 282


>ref|XP_002867860.1| EMB1417 [Arabidopsis lyrata subsp. lyrata]
            gi|297313696|gb|EFH44119.1| EMB1417 [Arabidopsis lyrata
            subsp. lyrata]
          Length = 317

 Score =  340 bits (871), Expect = 6e-91
 Identities = 179/293 (61%), Positives = 214/293 (73%), Gaps = 3/293 (1%)
 Frame = -2

Query: 1120 MLTLKYSSVFL--STKLDSVNI-SCKPSSVTVCAAKGPRPRYPRVWKSRTKIGTISKSKK 950
            ML+L+YS  +L   TK  S  + S +P++V VCAA+GPRPR PRVWK+R +IGTISK+ K
Sbjct: 1    MLSLRYSLPYLLLQTKESSTKLFSKRPNNVVVCAARGPRPRSPRVWKTRKRIGTISKAAK 60

Query: 949  LVDCIKGLSNVKEEVYGALDAFIAWELEFPLITVXXXXXXXXXXXXXKRIIQVTKWMLSK 770
            ++ CIKGLSNVKEEVYGALD+FIAWELEFPL+ V             K+IIQVTKWMLSK
Sbjct: 61   MIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSK 120

Query: 769  GQGRTKGSYFMLLNALAEDGRLDEAEELWGQVFSENLESLPRIFFNKMISIYYSRGMHDK 590
            GQGRT G+YF LLNALAED RLDEAEELW ++F E+LE  PR FFNKMISIYY R MH K
Sbjct: 121  GQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQK 180

Query: 589  MFEVFADMEELGVRPNDAIVSMVGDVFQKLEMLDKYEKLKQKYPPSKWEYRYFKGKRVKV 410
            +FEVFADMEELGV+PN AIVSMVG VF KLEM DKYEKL +KYPP +WE+RY KG+RVKV
Sbjct: 181  LFEVFADMEELGVKPNIAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKGRRVKV 240

Query: 409  LAKQVSLLEEAKHKNGYIEEAKDNLSEPDEDVNTDVDAVNDEANNHINEFDEE 251
             AKQ++ L E +      E+  D   E    + +D +   D  +    E DE+
Sbjct: 241  KAKQLNELSEGEGGLSSDEDKIDTEIESKSKILSDKEPKQDGEDLSEEEEDEK 293


>ref|XP_002513638.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223547546|gb|EEF49041.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 359

 Score =  335 bits (859), Expect = 1e-89
 Identities = 183/316 (57%), Positives = 224/316 (70%), Gaps = 3/316 (0%)
 Frame = -2

Query: 1141 RVQPFYRMLTLKYSSVFLSTKLDSVNISCKPSSVTVCAAKGPRPRYPRVWKSRTKIGTIS 962
            ++  + +ML L+     +ST+ + +  S   SSV V A KG RPR PRVWK++ +IGTIS
Sbjct: 28   KILSWRQMLCLRPPLPLISTRFEVIKFSKSTSSV-VSALKGARPRAPRVWKTKPRIGTIS 86

Query: 961  KSKKLVDCIKGLSNVKEEVYGALDAFIAWELEFPLITVXXXXXXXXXXXXXKRIIQVTKW 782
            KS KLV+CIKGLSNVKEEVYGALD+ IAWELEFPLI V             KRIIQV KW
Sbjct: 87   KSAKLVECIKGLSNVKEEVYGALDSLIAWELEFPLIAVKKALKTLENEQEWKRIIQVIKW 146

Query: 781  MLSKGQGRTKGSYFMLLNALAEDGRLDEAEELWGQVFSENLESLPRIFFNKMISIYYSRG 602
            MLSKGQGRT G+YF LLNALAED RLDEAEELW ++FS+NLE  PR FF+KMISIYY R 
Sbjct: 147  MLSKGQGRTMGTYFTLLNALAEDERLDEAEELWTKLFSDNLEGTPRNFFDKMISIYYKRE 206

Query: 601  MHDKMFEVFADMEELGVRPNDAIVSMVGDVFQKLEMLDKYEKLKQKYPPSKWEYRYFKGK 422
            MH+KMFE+FADMEELGVRP+ +IV+M+G VFQKL MLDKY KLK+KYPP KWEYRY KGK
Sbjct: 207  MHEKMFEIFADMEELGVRPSVSIVNMMGSVFQKLGMLDKYRKLKKKYPPPKWEYRYIKGK 266

Query: 421  RVKVLAKQVSLL---EEAKHKNGYIEEAKDNLSEPDEDVNTDVDAVNDEANNHINEFDEE 251
            RV++ AKQV+      E+ ++N       + L+E D   NT ++  N E +  +NE DEE
Sbjct: 267  RVRLRAKQVNEFLGANESVNQNAETPYISNKLNEED---NTKLNEANVEED--LNELDEE 321

Query: 250  VN*CLKEADSTTDLQN 203
             +    EA++     N
Sbjct: 322  SSTKSSEANAEASCLN 337